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@inproceedings{DBLP:conf/cmsb/BallariniBC23,
author = {Paolo Ballarini and
Mahmoud Bentriou and
Paul{-}Henry Courn{\`{e}}de},
editor = {Jun Pang and
Joachim Niehren},
title = {A Formal Approach for Tuning Stochastic Oscillators},
booktitle = {Computational Methods in Systems Biology - 21st International Conference,
{CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14137},
pages = {1--17},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-42697-1\_1},
doi = {10.1007/978-3-031-42697-1\_1},
timestamp = {Fri, 15 Sep 2023 15:00:48 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/BallariniBC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BenesBPSS23,
author = {Nikola Benes and
Lubos Brim and
Samuel Pastva and
David Safr{\'{a}}nek and
Eva Smij{\'{a}}kov{\'{a}}},
editor = {Jun Pang and
Joachim Niehren},
title = {Phenotype Control of Partially Specified Boolean Networks},
booktitle = {Computational Methods in Systems Biology - 21st International Conference,
{CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14137},
pages = {18--35},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-42697-1\_2},
doi = {10.1007/978-3-031-42697-1\_2},
timestamp = {Sat, 14 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/BenesBPSS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/ContentoSWH23,
author = {Lorenzo Contento and
Paul Stapor and
Daniel Weindl and
Jan Hasenauer},
editor = {Jun Pang and
Joachim Niehren},
title = {A More Expressive Spline Representation for {SBML} Models Improves
Code Generation Performance in {AMICI}},
booktitle = {Computational Methods in Systems Biology - 21st International Conference,
{CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14137},
pages = {36--43},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-42697-1\_3},
doi = {10.1007/978-3-031-42697-1\_3},
timestamp = {Sun, 24 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/ContentoSWH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/GundogduPANDL23,
author = {Pelin Gundogdu and
Miriam Pay{\'{a}}{-}Milans and
Inmaculada Alamo{-}Alvarez and
Isabel A. Nepomuceno{-}Chamorro and
Joaqu{\'{\i}}n Dopazo and
Carlos Loucera},
editor = {Jun Pang and
Joachim Niehren},
title = {Cell-Level Pathway Scoring Comparison with a Biologically Constrained
Variational Autoencoder},
booktitle = {Computational Methods in Systems Biology - 21st International Conference,
{CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14137},
pages = {62--77},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-42697-1\_5},
doi = {10.1007/978-3-031-42697-1\_5},
timestamp = {Sun, 24 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/GundogduPANDL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/HemeryF23,
author = {Mathieu Hemery and
Fran{\c{c}}ois Fages},
editor = {Jun Pang and
Joachim Niehren},
title = {On Estimating Derivatives of Input Signals in Biochemistry},
booktitle = {Computational Methods in Systems Biology - 21st International Conference,
{CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14137},
pages = {78--96},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-42697-1\_6},
doi = {10.1007/978-3-031-42697-1\_6},
timestamp = {Fri, 15 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/HemeryF23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Herbach23,
author = {Ulysse Herbach},
editor = {Jun Pang and
Joachim Niehren},
title = {Harissa: Stochastic Simulation and Inference of Gene Regulatory Networks
Based on Transcriptional Bursting},
booktitle = {Computational Methods in Systems Biology - 21st International Conference,
{CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14137},
pages = {97--105},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-42697-1\_7},
doi = {10.1007/978-3-031-42697-1\_7},
timestamp = {Sun, 24 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/Herbach23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/LeguizamonRobayoJTTV23,
author = {Alexander Leguizamon{-}Robayo and
Antonio Jim{\'{e}}nez{-}Pastor and
Mirco Tribastone and
Max Tschaikowski and
Andrea Vandin},
editor = {Jun Pang and
Joachim Niehren},
title = {Approximate Constrained Lumping of Polynomial Differential Equations},
booktitle = {Computational Methods in Systems Biology - 21st International Conference,
{CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14137},
pages = {106--123},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-42697-1\_8},
doi = {10.1007/978-3-031-42697-1\_8},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/LeguizamonRobayoJTTV23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/NicolaSIV23,
author = {Rocco De Nicola and
Luca Di Stefano and
Omar Inverso and
Serenella Valiani},
editor = {Jun Pang and
Joachim Niehren},
title = {Intuitive Modelling and Formal Analysis of Collective Behaviour in
Foraging Ants},
booktitle = {Computational Methods in Systems Biology - 21st International Conference,
{CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14137},
pages = {44--61},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-42697-1\_4},
doi = {10.1007/978-3-031-42697-1\_4},
timestamp = {Fri, 15 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/NicolaSIV23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/NiehrenLV23,
author = {Joachim Niehren and
C{\'{e}}dric Lhoussaine and
Ath{\'{e}}na{\"{\i}}s Vaginay},
editor = {Jun Pang and
Joachim Niehren},
title = {Core {SBML} and Its Formal Semantics},
booktitle = {Computational Methods in Systems Biology - 21st International Conference,
{CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14137},
pages = {124--143},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-42697-1\_9},
doi = {10.1007/978-3-031-42697-1\_9},
timestamp = {Fri, 15 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/NiehrenLV23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/RemyR23,
author = {Elisabeth Remy and
Paul Ruet},
editor = {Jun Pang and
Joachim Niehren},
title = {Average Sensitivity of Nested Canalizing Multivalued Functions},
booktitle = {Computational Methods in Systems Biology - 21st International Conference,
{CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14137},
pages = {144--156},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-42697-1\_10},
doi = {10.1007/978-3-031-42697-1\_10},
timestamp = {Fri, 15 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/RemyR23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/RivaLLP23,
author = {Sara Riva and
Jean{-}Marie Lagniez and
Gustavo Maga{\~{n}}a L{\'{o}}pez and
Lo{\"{\i}}c Paulev{\'{e}}},
editor = {Jun Pang and
Joachim Niehren},
title = {Tackling Universal Properties of Minimal Trap Spaces of Boolean Networks},
booktitle = {Computational Methods in Systems Biology - 21st International Conference,
{CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14137},
pages = {157--174},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-42697-1\_11},
doi = {10.1007/978-3-031-42697-1\_11},
timestamp = {Fri, 15 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/RivaLLP23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/SohMBBT23,
author = {Takehide Soh and
Morgan Magnin and
Daniel Le Berre and
Mutsunori Banbara and
Naoyuki Tamura},
editor = {Jun Pang and
Joachim Niehren},
title = {{SAF:} SAT-Based Attractor Finder in Asynchronous Automata Networks},
booktitle = {Computational Methods in Systems Biology - 21st International Conference,
{CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14137},
pages = {175--183},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-42697-1\_12},
doi = {10.1007/978-3-031-42697-1\_12},
timestamp = {Sun, 24 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/SohMBBT23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/SunFM23,
author = {Honglu Sun and
Maxime Folschette and
Morgan Magnin},
editor = {Jun Pang and
Joachim Niehren},
title = {Condition for Periodic Attractor in 4-Dimensional Repressilators},
booktitle = {Computational Methods in Systems Biology - 21st International Conference,
{CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14137},
pages = {184--201},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-42697-1\_13},
doi = {10.1007/978-3-031-42697-1\_13},
timestamp = {Sun, 24 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/SunFM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/TonelloP23,
author = {Elisa Tonello and
Lo{\"{\i}}c Paulev{\'{e}}},
editor = {Jun Pang and
Joachim Niehren},
title = {Attractor Identification in Asynchronous Boolean Dynamics with Network
Reduction},
booktitle = {Computational Methods in Systems Biology - 21st International Conference,
{CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14137},
pages = {202--219},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-42697-1\_14},
doi = {10.1007/978-3-031-42697-1\_14},
timestamp = {Sat, 14 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/TonelloP23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Treml23,
author = {Lilly Maria Treml},
editor = {Jun Pang and
Joachim Niehren},
title = {3D Hybrid Cellular Automata for Cardiac Electrophysiology: {A} Concept
Study},
booktitle = {Computational Methods in Systems Biology - 21st International Conference,
{CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14137},
pages = {220--235},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-42697-1\_15},
doi = {10.1007/978-3-031-42697-1\_15},
timestamp = {Sun, 24 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/Treml23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/WathieuSCT23,
author = {Lancelot Wathieu and
Gus Henry Smith and
Luis Ceze and
Chris Thachuk},
editor = {Jun Pang and
Joachim Niehren},
title = {Fridge Compiler: Optimal Circuits from Molecular Inventories},
booktitle = {Computational Methods in Systems Biology - 21st International Conference,
{CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14137},
pages = {236--252},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-42697-1\_16},
doi = {10.1007/978-3-031-42697-1\_16},
timestamp = {Fri, 15 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/WathieuSCT23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/ZabaikinaBS23,
author = {Iryna Zabaikina and
Pavol Bokes and
Abhyudai Singh},
editor = {Jun Pang and
Joachim Niehren},
title = {Joint Distribution of Protein Concentration and Cell Volume Coupled
by Feedback in Dilution},
booktitle = {Computational Methods in Systems Biology - 21st International Conference,
{CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14137},
pages = {253--268},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-42697-1\_17},
doi = {10.1007/978-3-031-42697-1\_17},
timestamp = {Sun, 24 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/ZabaikinaBS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/cmsb/2023,
editor = {Jun Pang and
Joachim Niehren},
title = {Computational Methods in Systems Biology - 21st International Conference,
{CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14137},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-42697-1},
doi = {10.1007/978-3-031-42697-1},
isbn = {978-3-031-42696-4},
timestamp = {Fri, 15 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/2023.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/ArgyrisLTTV22,
author = {Georgios Argyris and
Alberto Lluch{-}Lafuente and
Mirco Tribastone and
Max Tschaikowski and
Andrea Vandin},
editor = {Ion Petre and
Andrei Paun},
title = {An Extension of {ERODE} to Reduce Boolean Networks By Backward Boolean
Equivalence},
booktitle = {Computational Methods in Systems Biology - 20th International Conference,
{CMSB} 2022, Bucharest, Romania, September 14-16, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13447},
pages = {294--301},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-15034-0\_16},
doi = {10.1007/978-3-031-15034-0\_16},
timestamp = {Thu, 25 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/ArgyrisLTTV22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BraichenkoGS22,
author = {Svitlana Braichenko and
Ramon Grima and
Guido Sanguinetti},
editor = {Ion Petre and
Andrei Paun},
title = {Bayesian Learning of Effective Chemical Master Equations in Crowded
Intracellular Conditions},
booktitle = {Computational Methods in Systems Biology - 20th International Conference,
{CMSB} 2022, Bucharest, Romania, September 14-16, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13447},
pages = {239--258},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-15034-0\_12},
doi = {10.1007/978-3-031-15034-0\_12},
timestamp = {Thu, 25 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/BraichenkoGS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/CravoFNP22,
author = {Fabricio Cravo and
Matthias F{\"{u}}gger and
Thomas Nowak and
Gayathri Prakash},
editor = {Ion Petre and
Andrei Paun},
title = {MobsPy: {A} Meta-species Language for Chemical Reaction Networks},
booktitle = {Computational Methods in Systems Biology - 20th International Conference,
{CMSB} 2022, Bucharest, Romania, September 14-16, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13447},
pages = {277--285},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-15034-0\_14},
doi = {10.1007/978-3-031-15034-0\_14},
timestamp = {Mon, 22 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/CravoFNP22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/DesoeuvresSR22,
author = {Aur{\'{e}}lien Desoeuvres and
Peter Szmolyan and
Ovidiu Radulescu},
editor = {Ion Petre and
Andrei Paun},
title = {Qualitative Dynamics of Chemical Reaction Networks: An Investigation
Using Partial Tropical Equilibrations},
booktitle = {Computational Methods in Systems Biology - 20th International Conference,
{CMSB} 2022, Bucharest, Romania, September 14-16, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13447},
pages = {61--85},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-15034-0\_4},
doi = {10.1007/978-3-031-15034-0\_4},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/DesoeuvresSR22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/GreugnySF22,
author = {El{\'{e}}a Thibault Greugny and
Georgios N. Stamatas and
Fran{\c{c}}ois Fages},
editor = {Ion Petre and
Andrei Paun},
title = {Stability Versus Meta-stability in a Skin Microbiome Model},
booktitle = {Computational Methods in Systems Biology - 20th International Conference,
{CMSB} 2022, Bucharest, Romania, September 14-16, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13447},
pages = {179--197},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-15034-0\_9},
doi = {10.1007/978-3-031-15034-0\_9},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/GreugnySF22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/HelfrichCKM22,
author = {Martin Helfrich and
Milan Ceska and
Jan Kret{\'{\i}}nsk{\'{y}} and
Stefan Marticek},
editor = {Ion Petre and
Andrei Paun},
title = {Abstraction-Based Segmental Simulation of Chemical Reaction Networks},
booktitle = {Computational Methods in Systems Biology - 20th International Conference,
{CMSB} 2022, Bucharest, Romania, September 14-16, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13447},
pages = {41--60},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-15034-0\_3},
doi = {10.1007/978-3-031-15034-0\_3},
timestamp = {Sat, 10 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/HelfrichCKM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/HemeryF22,
author = {Mathieu Hemery and
Fran{\c{c}}ois Fages},
editor = {Ion Petre and
Andrei Paun},
title = {Algebraic Biochemistry: {A} Framework for Analog Online Computation
in Cells},
booktitle = {Computational Methods in Systems Biology - 20th International Conference,
{CMSB} 2022, Bucharest, Romania, September 14-16, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13447},
pages = {3--20},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-15034-0\_1},
doi = {10.1007/978-3-031-15034-0\_1},
timestamp = {Mon, 22 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/HemeryF22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Jimenez-PastorJ22,
author = {Antonio Jim{\'{e}}nez{-}Pastor and
Joshua Paul Jacob and
Gleb Pogudin},
editor = {Ion Petre and
Andrei Paun},
title = {Exact Linear Reduction for Rational Dynamical Systems},
booktitle = {Computational Methods in Systems Biology - 20th International Conference,
{CMSB} 2022, Bucharest, Romania, September 14-16, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13447},
pages = {198--216},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-15034-0\_10},
doi = {10.1007/978-3-031-15034-0\_10},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/Jimenez-PastorJ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/LaitinenL22,
author = {Ville Laitinen and
Leo Lahti},
editor = {Ion Petre and
Andrei Paun},
title = {Probabilistic Multivariate Early Warning Signals},
booktitle = {Computational Methods in Systems Biology - 20th International Conference,
{CMSB} 2022, Bucharest, Romania, September 14-16, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13447},
pages = {259--274},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-15034-0\_13},
doi = {10.1007/978-3-031-15034-0\_13},
timestamp = {Thu, 25 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/LaitinenL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/NiehrenVV22,
author = {Joachim Niehren and
Ath{\'{e}}na{\"{\i}}s Vaginay and
Cristian Versari},
editor = {Ion Petre and
Andrei Paun},
title = {Abstract Simulation of Reaction Networks via Boolean Networks},
booktitle = {Computational Methods in Systems Biology - 20th International Conference,
{CMSB} 2022, Bucharest, Romania, September 14-16, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13447},
pages = {21--40},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-15034-0\_2},
doi = {10.1007/978-3-031-15034-0\_2},
timestamp = {Sat, 10 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/NiehrenVV22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Pastva22,
author = {Samuel Pastva},
editor = {Ion Petre and
Andrei Paun},
title = {Variable Stabilisation in Boolean Monotonic Model Pools},
booktitle = {Computational Methods in Systems Biology - 20th International Conference,
{CMSB} 2022, Bucharest, Romania, September 14-16, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13447},
pages = {122--137},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-15034-0\_6},
doi = {10.1007/978-3-031-15034-0\_6},
timestamp = {Mon, 22 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/Pastva22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/RedaD22,
author = {Cl{\'{e}}mence R{\'{e}}da and
Andr{\'{e}}e Delahaye{-}Duriez},
editor = {Ion Petre and
Andrei Paun},
title = {Prioritization of Candidate Genes Through Boolean Networks},
booktitle = {Computational Methods in Systems Biology - 20th International Conference,
{CMSB} 2022, Bucharest, Romania, September 14-16, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13447},
pages = {89--121},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-15034-0\_5},
doi = {10.1007/978-3-031-15034-0\_5},
timestamp = {Thu, 25 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/RedaD22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/RoncalliP22,
author = {Th{\'{e}}o Roncalli and
Lo{\"{\i}}c Paulev{\'{e}}},
editor = {Ion Petre and
Andrei Paun},
title = {Variable-Depth Simulation of Most Permissive Boolean Networks},
booktitle = {Computational Methods in Systems Biology - 20th International Conference,
{CMSB} 2022, Bucharest, Romania, September 14-16, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13447},
pages = {138--157},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-15034-0\_7},
doi = {10.1007/978-3-031-15034-0\_7},
timestamp = {Thu, 25 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/RoncalliP22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/SunFM22,
author = {Honglu Sun and
Maxime Folschette and
Morgan Magnin},
editor = {Ion Petre and
Andrei Paun},
title = {Limit Cycle Analysis of a Class of Hybrid Gene Regulatory Networks},
booktitle = {Computational Methods in Systems Biology - 20th International Conference,
{CMSB} 2022, Bucharest, Romania, September 14-16, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13447},
pages = {217--236},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-15034-0\_11},
doi = {10.1007/978-3-031-15034-0\_11},
timestamp = {Thu, 25 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/SunFM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/TrinhBHS22,
author = {Van{-}Giang Trinh and
Belaid Benhamou and
Kunihiko Hiraishi and
Sylvain Soliman},
editor = {Ion Petre and
Andrei Paun},
title = {Minimal Trap Spaces of Logical Models are Maximal Siphons of Their
Petri Net Encoding},
booktitle = {Computational Methods in Systems Biology - 20th International Conference,
{CMSB} 2022, Bucharest, Romania, September 14-16, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13447},
pages = {158--176},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-15034-0\_8},
doi = {10.1007/978-3-031-15034-0\_8},
timestamp = {Thu, 25 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/TrinhBHS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/TrojakSBB22,
author = {Matej Troj{\'{a}}k and
David Safr{\'{a}}nek and
Branislav Brozmann and
Lubos Brim},
editor = {Ion Petre and
Andrei Paun},
title = {eBCSgen 2.0: Modelling and Analysis of Regulated Rule-Based Systems},
booktitle = {Computational Methods in Systems Biology - 20th International Conference,
{CMSB} 2022, Bucharest, Romania, September 14-16, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13447},
pages = {302--309},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-15034-0\_17},
doi = {10.1007/978-3-031-15034-0\_17},
timestamp = {Mon, 22 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/TrojakSBB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/WiederandersMZ22,
author = {Hanna Josephine Wiederanders and
Anne{-}Lena Moor and
Christoph Zechner},
editor = {Ion Petre and
Andrei Paun},
title = {Automated Generation of Conditional Moment Equations for Stochastic
Reaction Networks},
booktitle = {Computational Methods in Systems Biology - 20th International Conference,
{CMSB} 2022, Bucharest, Romania, September 14-16, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13447},
pages = {286--293},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-15034-0\_15},
doi = {10.1007/978-3-031-15034-0\_15},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/WiederandersMZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/cmsb/2022,
editor = {Ion Petre and
Andrei Paun},
title = {Computational Methods in Systems Biology - 20th International Conference,
{CMSB} 2022, Bucharest, Romania, September 14-16, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13447},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-15034-0},
doi = {10.1007/978-3-031-15034-0},
isbn = {978-3-031-15033-3},
timestamp = {Mon, 22 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/2022.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/ArgyrisLTTV21,
author = {Georgios Argyris and
Alberto Lluch{-}Lafuente and
Mirco Tribastone and
Max Tschaikowski and
Andrea Vandin},
editor = {Eugenio Cinquemani and
Lo{\"{\i}}c Paulev{\'{e}}},
title = {Reducing Boolean Networks with Backward Boolean Equivalence},
booktitle = {Computational Methods in Systems Biology - 19th International Conference,
{CMSB} 2021, Bordeaux, France, September 22-24, 2021, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12881},
pages = {1--18},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-85633-5\_1},
doi = {10.1007/978-3-030-85633-5\_1},
timestamp = {Thu, 16 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/ArgyrisLTTV21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BenesBPS21,
author = {Nikola Benes and
Lubos Brim and
Samuel Pastva and
David Safr{\'{a}}nek},
editor = {Eugenio Cinquemani and
Lo{\"{\i}}c Paulev{\'{e}}},
title = {Aeon 2021: Bifurcation Decision Trees in Boolean Networks},
booktitle = {Computational Methods in Systems Biology - 19th International Conference,
{CMSB} 2021, Bordeaux, France, September 22-24, 2021, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12881},
pages = {230--237},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-85633-5\_14},
doi = {10.1007/978-3-030-85633-5\_14},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/BenesBPS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BiswasGMT21,
author = {Ansuman Biswas and
Ashutosh Gupta and
Meghana Missula and
Mukund Thattai},
editor = {Eugenio Cinquemani and
Lo{\"{\i}}c Paulev{\'{e}}},
title = {Automated Inference of Production Rules for Glycans},
booktitle = {Computational Methods in Systems Biology - 19th International Conference,
{CMSB} 2021, Bordeaux, France, September 22-24, 2021, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12881},
pages = {57--73},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-85633-5\_4},
doi = {10.1007/978-3-030-85633-5\_4},
timestamp = {Tue, 14 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/BiswasGMT21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BuffardDNRZR21,
author = {Marion Buffard and
Aur{\'{e}}lien Desoeuvres and
Aur{\'{e}}lien Naldi and
Cl{\'{e}}ment Requil{\'{e}} and
Andrei Yu. Zinovyev and
Ovidiu Radulescu},
editor = {Eugenio Cinquemani and
Lo{\"{\i}}c Paulev{\'{e}}},
title = {LNetReduce: Tool for Reducing Linear Dynamic Networks with Separated
Timescales},
booktitle = {Computational Methods in Systems Biology - 19th International Conference,
{CMSB} 2021, Bordeaux, France, September 22-24, 2021, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12881},
pages = {238--244},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-85633-5\_15},
doi = {10.1007/978-3-030-85633-5\_15},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/BuffardDNRZR21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/CairoliCB21,
author = {Francesca Cairoli and
Ginevra Carbone and
Luca Bortolussi},
editor = {Eugenio Cinquemani and
Lo{\"{\i}}c Paulev{\'{e}}},
title = {Abstraction of Markov Population Dynamics via Generative Adversarial
Nets},
booktitle = {Computational Methods in Systems Biology - 19th International Conference,
{CMSB} 2021, Bordeaux, France, September 22-24, 2021, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12881},
pages = {19--35},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-85633-5\_2},
doi = {10.1007/978-3-030-85633-5\_2},
timestamp = {Tue, 14 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/CairoliCB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/CelikBS21,
author = {Candan {\c{C}}elik and
Pavol Bokes and
Abhyudai Singh},
editor = {Eugenio Cinquemani and
Lo{\"{\i}}c Paulev{\'{e}}},
title = {Protein Noise and Distribution in a Two-Stage Gene-Expression Model
Extended by an mRNA Inactivation Loop},
booktitle = {Computational Methods in Systems Biology - 19th International Conference,
{CMSB} 2021, Bordeaux, France, September 22-24, 2021, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12881},
pages = {215--229},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-85633-5\_13},
doi = {10.1007/978-3-030-85633-5\_13},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/CelikBS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/DotyS21,
author = {David Doty and
Eric E. Severson},
editor = {Eugenio Cinquemani and
Lo{\"{\i}}c Paulev{\'{e}}},
title = {Ppsim: {A} Software Package for Efficiently Simulating and Visualizing
Population Protocols},
booktitle = {Computational Methods in Systems Biology - 19th International Conference,
{CMSB} 2021, Bordeaux, France, September 22-24, 2021, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12881},
pages = {245--253},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-85633-5\_16},
doi = {10.1007/978-3-030-85633-5\_16},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/DotyS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/GibartCC21,
author = {Laetitia Gibart and
H{\'{e}}l{\`{e}}ne Collavizza and
Jean{-}Paul Comet},
editor = {Eugenio Cinquemani and
Lo{\"{\i}}c Paulev{\'{e}}},
title = {Greening R. Thomas' Framework with Environment Variables: {A} Divide
and Conquer Approach},
booktitle = {Computational Methods in Systems Biology - 19th International Conference,
{CMSB} 2021, Bordeaux, France, September 22-24, 2021, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12881},
pages = {36--56},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-85633-5\_3},
doi = {10.1007/978-3-030-85633-5\_3},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/GibartCC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/HemeryFS21,
author = {Mathieu Hemery and
Fran{\c{c}}ois Fages and
Sylvain Soliman},
editor = {Eugenio Cinquemani and
Lo{\"{\i}}c Paulev{\'{e}}},
title = {Compiling Elementary Mathematical Functions into Finite Chemical Reaction
Networks via a Polynomialization Algorithm for ODEs},
booktitle = {Computational Methods in Systems Biology - 19th International Conference,
{CMSB} 2021, Bordeaux, France, September 22-24, 2021, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12881},
pages = {74--90},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-85633-5\_5},
doi = {10.1007/978-3-030-85633-5\_5},
timestamp = {Tue, 14 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/HemeryFS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/IlmerOP21,
author = {Ilia Ilmer and
Alexey Ovchinnikov and
Gleb Pogudin},
editor = {Eugenio Cinquemani and
Lo{\"{\i}}c Paulev{\'{e}}},
title = {Web-Based Structural Identifiability Analyzer},
booktitle = {Computational Methods in Systems Biology - 19th International Conference,
{CMSB} 2021, Bordeaux, France, September 22-24, 2021, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12881},
pages = {254--265},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-85633-5\_17},
doi = {10.1007/978-3-030-85633-5\_17},
timestamp = {Tue, 14 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/IlmerOP21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/PogudinZ21,
author = {Gleb Pogudin and
Xingjian Zhang},
editor = {Eugenio Cinquemani and
Lo{\"{\i}}c Paulev{\'{e}}},
title = {Interpretable Exact Linear Reductions via Positivity},
booktitle = {Computational Methods in Systems Biology - 19th International Conference,
{CMSB} 2021, Bordeaux, France, September 22-24, 2021, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12881},
pages = {91--107},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-85633-5\_6},
doi = {10.1007/978-3-030-85633-5\_6},
timestamp = {Thu, 01 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/PogudinZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/RazzaqGIMBIBOMT21,
author = {Misbah Razzaq and
Louisa Goumidi and
Maria{-}Jesus Iglesias and
Ga{\"{e}}lle Munsch and
Maria Bruzelius and
Manal Ibrahim{-}Kosta and
Lynn Butler and
Jacob Odeberg and
Pierre{-}Emmanuel Morange and
David Alexandre Tregouet},
editor = {Eugenio Cinquemani and
Lo{\"{\i}}c Paulev{\'{e}}},
title = {Explainable Artificial Neural Network for Recurrent Venous Thromboembolism
Based on Plasma Proteomics},
booktitle = {Computational Methods in Systems Biology - 19th International Conference,
{CMSB} 2021, Bordeaux, France, September 22-24, 2021, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12881},
pages = {108--121},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-85633-5\_7},
doi = {10.1007/978-3-030-85633-5\_7},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/RazzaqGIMBIBOMT21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/SautreuilLC21,
author = {Mathilde Sautreuil and
Sarah Lemler and
Paul{-}Henry Courn{\`{e}}de},
editor = {Eugenio Cinquemani and
Lo{\"{\i}}c Paulev{\'{e}}},
title = {Neural Networks to Predict Survival from RNA-seq Data in Oncology},
booktitle = {Computational Methods in Systems Biology - 19th International Conference,
{CMSB} 2021, Bordeaux, France, September 22-24, 2021, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12881},
pages = {122--140},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-85633-5\_8},
doi = {10.1007/978-3-030-85633-5\_8},
timestamp = {Thu, 16 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/SautreuilLC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/SaxenaLMDV21,
author = {Gaurav Saxena and
Miguel Ponce de Leon and
Arnau Montagud and
David Vicente Dorca and
Alfonso Valencia},
editor = {Eugenio Cinquemani and
Lo{\"{\i}}c Paulev{\'{e}}},
title = {BioFVM-X: An MPI+OpenMP 3-D Simulator for Biological Systems},
booktitle = {Computational Methods in Systems Biology - 19th International Conference,
{CMSB} 2021, Bordeaux, France, September 22-24, 2021, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12881},
pages = {266--279},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-85633-5\_18},
doi = {10.1007/978-3-030-85633-5\_18},
timestamp = {Thu, 16 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/SaxenaLMDV21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/TheorellS21,
author = {Axel Theorell and
J{\"{o}}rg Stelling},
editor = {Eugenio Cinquemani and
Lo{\"{\i}}c Paulev{\'{e}}},
title = {Microbial Community Decision Making Models in Batch and Chemostat
Cultures},
booktitle = {Computational Methods in Systems Biology - 19th International Conference,
{CMSB} 2021, Bordeaux, France, September 22-24, 2021, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12881},
pages = {141--158},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-85633-5\_9},
doi = {10.1007/978-3-030-85633-5\_9},
timestamp = {Tue, 28 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/TheorellS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/ThuillierBBCPS21,
author = {Kerian Thuillier and
Caroline Baroukh and
Alexander Bockmayr and
Ludovic Cottret and
Lo{\"{\i}}c Paulev{\'{e}} and
Anne Siegel},
editor = {Eugenio Cinquemani and
Lo{\"{\i}}c Paulev{\'{e}}},
title = {Learning Boolean Controls in Regulated Metabolic Networks: {A} Case-Study},
booktitle = {Computational Methods in Systems Biology - 19th International Conference,
{CMSB} 2021, Bordeaux, France, September 22-24, 2021, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12881},
pages = {159--180},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-85633-5\_10},
doi = {10.1007/978-3-030-85633-5\_10},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/ThuillierBBCPS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/TurpinBKS21,
author = {Baptiste Turpin and
Eline Y. Bijman and
Hans{-}Michael Kaltenbach and
J{\"{o}}rg Stelling},
editor = {Eugenio Cinquemani and
Lo{\"{\i}}c Paulev{\'{e}}},
title = {Population Design for Synthetic Gene Circuits},
booktitle = {Computational Methods in Systems Biology - 19th International Conference,
{CMSB} 2021, Bordeaux, France, September 22-24, 2021, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12881},
pages = {181--197},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-85633-5\_11},
doi = {10.1007/978-3-030-85633-5\_11},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/TurpinBKS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/WarnkeU21,
author = {Tom Warnke and
Adelinde M. Uhrmacher},
editor = {Eugenio Cinquemani and
Lo{\"{\i}}c Paulev{\'{e}}},
title = {Nonlinear Pattern Matching in Rule-Based Modeling Languages},
booktitle = {Computational Methods in Systems Biology - 19th International Conference,
{CMSB} 2021, Bordeaux, France, September 22-24, 2021, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12881},
pages = {198--214},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-85633-5\_12},
doi = {10.1007/978-3-030-85633-5\_12},
timestamp = {Thu, 16 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/WarnkeU21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/cmsb/2021,
editor = {Eugenio Cinquemani and
Lo{\"{\i}}c Paulev{\'{e}}},
title = {Computational Methods in Systems Biology - 19th International Conference,
{CMSB} 2021, Bordeaux, France, September 22-24, 2021, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12881},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-85633-5},
doi = {10.1007/978-3-030-85633-5},
isbn = {978-3-030-85632-8},
timestamp = {Tue, 14 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/2021.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BarsBG20,
author = {Sophie Le Bars and
J{\'{e}}r{\'{e}}mie Bourdon and
Carito Guziolowski},
editor = {Alessandro Abate and
Tatjana Petrov and
Verena Wolf},
title = {Comparing Probabilistic and Logic Programming Approaches to Predict
the Effects of Enzymes in a Neurodegenerative Disease Model},
booktitle = {Computational Methods in Systems Biology - 18th International Conference,
{CMSB} 2020, Konstanz, Germany, September 23-25, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12314},
pages = {141--156},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-60327-4\_8},
doi = {10.1007/978-3-030-60327-4\_8},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/BarsBG20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BokesKP20,
author = {Pavol Bokes and
Julia Klein and
Tatjana Petrov},
editor = {Alessandro Abate and
Tatjana Petrov and
Verena Wolf},
title = {Accelerating Reactions at the {DNA} Can Slow Down Transient Gene Expression},
booktitle = {Computational Methods in Systems Biology - 18th International Conference,
{CMSB} 2020, Konstanz, Germany, September 23-25, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12314},
pages = {44--60},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-60327-4\_3},
doi = {10.1007/978-3-030-60327-4\_3},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/BokesKP20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BoyenvalBCC20,
author = {D{\'{e}}borah Boyenval and
Gilles Bernot and
H{\'{e}}l{\`{e}}ne Collavizza and
Jean{-}Paul Comet},
editor = {Alessandro Abate and
Tatjana Petrov and
Verena Wolf},
title = {What is a Cell Cycle Checkpoint? The TotemBioNet Answer},
booktitle = {Computational Methods in Systems Biology - 18th International Conference,
{CMSB} 2020, Konstanz, Germany, September 23-25, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12314},
pages = {362--372},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-60327-4\_21},
doi = {10.1007/978-3-030-60327-4\_21},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/BoyenvalBCC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Cardelli20,
author = {Luca Cardelli},
editor = {Alessandro Abate and
Tatjana Petrov and
Verena Wolf},
title = {Kaemika App: Integrating Protocols and Chemical Simulation - Integrating
Protocols and Chemical Simulation},
booktitle = {Computational Methods in Systems Biology - 18th International Conference,
{CMSB} 2020, Konstanz, Germany, September 23-25, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12314},
pages = {373--379},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-60327-4\_22},
doi = {10.1007/978-3-030-60327-4\_22},
timestamp = {Thu, 01 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/Cardelli20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/CelikBS20,
author = {Candan {\c{C}}elik and
Pavol Bokes and
Abhyudai Singh},
editor = {Alessandro Abate and
Tatjana Petrov and
Verena Wolf},
title = {Stationary Distributions and Metastable Behaviour for Self-regulating
Proteins with General Lifetime Distributions},
booktitle = {Computational Methods in Systems Biology - 18th International Conference,
{CMSB} 2020, Konstanz, Germany, September 23-25, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12314},
pages = {27--43},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-60327-4\_2},
doi = {10.1007/978-3-030-60327-4\_2},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/CelikBS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/ChevalierNCZP20,
author = {St{\'{e}}phanie Chevalier and
Vincent No{\"{e}}l and
Laurence Calzone and
Andrei Yu. Zinovyev and
Lo{\"{\i}}c Paulev{\'{e}}},
editor = {Alessandro Abate and
Tatjana Petrov and
Verena Wolf},
title = {Synthesis and Simulation of Ensembles of Boolean Networks for Cell
Fate Decision},
booktitle = {Computational Methods in Systems Biology - 18th International Conference,
{CMSB} 2020, Konstanz, Germany, September 23-25, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12314},
pages = {193--209},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-60327-4\_11},
doi = {10.1007/978-3-030-60327-4\_11},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/ChevalierNCZP20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/DanosHHS20,
author = {Vincent Danos and
Tobias Heindel and
Ricardo Honorato{-}Zimmer and
Sandro Stucki},
editor = {Alessandro Abate and
Tatjana Petrov and
Verena Wolf},
title = {Rate Equations for Graphs},
booktitle = {Computational Methods in Systems Biology - 18th International Conference,
{CMSB} 2020, Konstanz, Germany, September 23-25, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12314},
pages = {3--26},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-60327-4\_1},
doi = {10.1007/978-3-030-60327-4\_1},
timestamp = {Tue, 06 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/DanosHHS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/DegrandFS20,
author = {Elisabeth Degrand and
Fran{\c{c}}ois Fages and
Sylvain Soliman},
editor = {Alessandro Abate and
Tatjana Petrov and
Verena Wolf},
title = {Graphical Conditions for Rate Independence in Chemical Reaction Networks},
booktitle = {Computational Methods in Systems Biology - 18th International Conference,
{CMSB} 2020, Konstanz, Germany, September 23-25, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12314},
pages = {61--78},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-60327-4\_4},
doi = {10.1007/978-3-030-60327-4\_4},
timestamp = {Thu, 01 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/DegrandFS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/DesoeuvresTR20,
author = {Aur{\'{e}}lien Desoeuvres and
Gilles Trombettoni and
Ovidiu Radulescu},
editor = {Alessandro Abate and
Tatjana Petrov and
Verena Wolf},
title = {Interval Constraint Satisfaction and Optimization for Biological Homeostasis
and Multistationarity},
booktitle = {Computational Methods in Systems Biology - 18th International Conference,
{CMSB} 2020, Konstanz, Germany, September 23-25, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12314},
pages = {79--101},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-60327-4\_5},
doi = {10.1007/978-3-030-60327-4\_5},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/DesoeuvresTR20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/DiopCT20,
author = {Ousmane Diop and
Madalena Chaves and
Laurent Tournier},
editor = {Alessandro Abate and
Tatjana Petrov and
Verena Wolf},
title = {Qualitative Analysis of Mammalian Circadian Oscillations: Cycle Dynamics
and Robustness},
booktitle = {Computational Methods in Systems Biology - 18th International Conference,
{CMSB} 2020, Konstanz, Germany, September 23-25, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12314},
pages = {176--192},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-60327-4\_10},
doi = {10.1007/978-3-030-60327-4\_10},
timestamp = {Thu, 01 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/DiopCT20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/FontanalsTS20,
author = {Laura Cifuentes Fontanals and
Elisa Tonello and
Heike Siebert},
editor = {Alessandro Abate and
Tatjana Petrov and
Verena Wolf},
title = {Control Strategy Identification via Trap Spaces in Boolean Networks},
booktitle = {Computational Methods in Systems Biology - 18th International Conference,
{CMSB} 2020, Konstanz, Germany, September 23-25, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12314},
pages = {159--175},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-60327-4\_9},
doi = {10.1007/978-3-030-60327-4\_9},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/FontanalsTS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/GouveiaLM20,
author = {Filipe Gouveia and
In{\^{e}}s Lynce and
Pedro T. Monteiro},
editor = {Alessandro Abate and
Tatjana Petrov and
Verena Wolf},
title = {ModRev - Model Revision Tool for Boolean Logical Models of Biological
Regulatory Networks},
booktitle = {Computational Methods in Systems Biology - 18th International Conference,
{CMSB} 2020, Konstanz, Germany, September 23-25, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12314},
pages = {339--348},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-60327-4\_18},
doi = {10.1007/978-3-030-60327-4\_18},
timestamp = {Thu, 04 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/GouveiaLM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/HaarPS20,
author = {Stefan Haar and
Lo{\"{\i}}c Paulev{\'{e}} and
Stefan Schwoon},
editor = {Alessandro Abate and
Tatjana Petrov and
Verena Wolf},
title = {Drawing the Line: Basin Boundaries in Safe Petri Nets},
booktitle = {Computational Methods in Systems Biology - 18th International Conference,
{CMSB} 2020, Konstanz, Germany, September 23-25, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12314},
pages = {321--336},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-60327-4\_17},
doi = {10.1007/978-3-030-60327-4\_17},
timestamp = {Thu, 01 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/HaarPS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/HemeryFS20,
author = {Mathieu Hemery and
Fran{\c{c}}ois Fages and
Sylvain Soliman},
editor = {Alessandro Abate and
Tatjana Petrov and
Verena Wolf},
title = {On the Complexity of Quadratization for Polynomial Differential Equations},
booktitle = {Computational Methods in Systems Biology - 18th International Conference,
{CMSB} 2020, Konstanz, Germany, September 23-25, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12314},
pages = {120--140},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-60327-4\_7},
doi = {10.1007/978-3-030-60327-4\_7},
timestamp = {Thu, 01 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/HemeryFS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/JulvezO20,
author = {Jorge J{\'{u}}lvez and
Stephen G. Oliver},
editor = {Alessandro Abate and
Tatjana Petrov and
Verena Wolf},
title = {fnyzer: {A} Python Package for the Analysis of Flexible Nets},
booktitle = {Computational Methods in Systems Biology - 18th International Conference,
{CMSB} 2020, Konstanz, Germany, September 23-25, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12314},
pages = {349--355},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-60327-4\_19},
doi = {10.1007/978-3-030-60327-4\_19},
timestamp = {Wed, 07 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/JulvezO20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/MolyneuxA20,
author = {Gareth W. Molyneux and
Alessandro Abate},
editor = {Alessandro Abate and
Tatjana Petrov and
Verena Wolf},
title = {ABC(SMC)\({}^{\mbox{2}}\): Simultaneous Inference and Model Checking
of Chemical Reaction Networks},
booktitle = {Computational Methods in Systems Biology - 18th International Conference,
{CMSB} 2020, Konstanz, Germany, September 23-25, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12314},
pages = {255--279},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-60327-4\_14},
doi = {10.1007/978-3-030-60327-4\_14},
timestamp = {Thu, 01 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/MolyneuxA20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/OargaBJ20,
author = {Alexandru Oarga and
Bridget Bannerman and
Jorge J{\'{u}}lvez},
editor = {Alessandro Abate and
Tatjana Petrov and
Verena Wolf},
title = {Growth Dependent Computation of Chokepoints in Metabolic Networks},
booktitle = {Computational Methods in Systems Biology - 18th International Conference,
{CMSB} 2020, Konstanz, Germany, September 23-25, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12314},
pages = {102--119},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-60327-4\_6},
doi = {10.1007/978-3-030-60327-4\_6},
timestamp = {Wed, 07 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/OargaBJ20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/PereCR20,
author = {Marielle P{\'{e}}r{\'{e}} and
Madalena Chaves and
J{\'{e}}r{\'{e}}mie Roux},
editor = {Alessandro Abate and
Tatjana Petrov and
Verena Wolf},
title = {Core Models of Receptor Reactions to Evaluate Basic Pathway Designs
Enabling Heterogeneous Commitments to Apoptosis},
booktitle = {Computational Methods in Systems Biology - 18th International Conference,
{CMSB} 2020, Konstanz, Germany, September 23-25, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12314},
pages = {298--320},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-60327-4\_16},
doi = {10.1007/978-3-030-60327-4\_16},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/PereCR20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/SchwiegerBSH20,
author = {Robert Schwieger and
Mat{\'{\i}}as R. Bender and
Heike Siebert and
Christian Haase},
editor = {Alessandro Abate and
Tatjana Petrov and
Verena Wolf},
title = {Classifier Construction in Boolean Networks Using Algebraic Methods},
booktitle = {Computational Methods in Systems Biology - 18th International Conference,
{CMSB} 2020, Konstanz, Germany, September 23-25, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12314},
pages = {210--233},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-60327-4\_12},
doi = {10.1007/978-3-030-60327-4\_12},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/SchwiegerBSH20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/SmijakovaPSB20,
author = {Eva Smij{\'{a}}kov{\'{a}} and
Samuel Pastva and
David Safr{\'{a}}nek and
Lubos Brim},
editor = {Alessandro Abate and
Tatjana Petrov and
Verena Wolf},
title = {Parallel Parameter Synthesis for Multi-affine Hybrid Systems from
Hybrid {CTL} Specifications},
booktitle = {Computational Methods in Systems Biology - 18th International Conference,
{CMSB} 2020, Konstanz, Germany, September 23-25, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12314},
pages = {280--297},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-60327-4\_15},
doi = {10.1007/978-3-030-60327-4\_15},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/SmijakovaPSB20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Su020,
author = {Cui Su and
Jun Pang},
editor = {Alessandro Abate and
Tatjana Petrov and
Verena Wolf},
title = {Sequential Temporary and Permanent Control of Boolean Networks},
booktitle = {Computational Methods in Systems Biology - 18th International Conference,
{CMSB} 2020, Konstanz, Germany, September 23-25, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12314},
pages = {234--251},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-60327-4\_13},
doi = {10.1007/978-3-030-60327-4\_13},
timestamp = {Thu, 01 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/Su020.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/TrojakSMB20,
author = {Matej Troj{\'{a}}k and
David Safr{\'{a}}nek and
Lukr{\'{e}}cia Mertov{\'{a}} and
Lubos Brim},
editor = {Alessandro Abate and
Tatjana Petrov and
Verena Wolf},
title = {eBCSgen: {A} Software Tool for Biochemical Space Language},
booktitle = {Computational Methods in Systems Biology - 18th International Conference,
{CMSB} 2020, Konstanz, Germany, September 23-25, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12314},
pages = {356--361},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-60327-4\_20},
doi = {10.1007/978-3-030-60327-4\_20},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/TrojakSMB20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/cmsb/2020,
editor = {Alessandro Abate and
Tatjana Petrov and
Verena Wolf},
title = {Computational Methods in Systems Biology - 18th International Conference,
{CMSB} 2020, Konstanz, Germany, September 23-25, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12314},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-60327-4},
doi = {10.1007/978-3-030-60327-4},
isbn = {978-3-030-60326-7},
timestamp = {Thu, 01 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/2020.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/0001K19,
author = {Milan Ceska and
Jan Kret{\'{\i}}nsk{\'{y}}},
editor = {Luca Bortolussi and
Guido Sanguinetti},
title = {Semi-quantitative Abstraction and Analysis of Chemical Reaction Networks
(Extended Abstract)},
booktitle = {Computational Methods in Systems Biology - 17th International Conference,
{CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11773},
pages = {337--341},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-31304-3\_22},
doi = {10.1007/978-3-030-31304-3\_22},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/0001K19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Abdeljaoued-Tej19,
author = {Ines Abdeljaoued{-}Tej and
Alia Benkahla and
Ghassen Haddad and
Annick Valibouze},
editor = {Luca Bortolussi and
Guido Sanguinetti},
title = {Separators for Polynomial Dynamic Systems with Linear Complexity},
booktitle = {Computational Methods in Systems Biology - 17th International Conference,
{CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11773},
pages = {373--378},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-31304-3\_30},
doi = {10.1007/978-3-030-31304-3\_30},
timestamp = {Mon, 23 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/Abdeljaoued-Tej19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/AllartNV19,
author = {Emilie Allart and
Joachim Niehren and
Cristian Versari},
editor = {Luca Bortolussi and
Guido Sanguinetti},
title = {Computing Difference Abstractions of Metabolic Networks Under Kinetic
Constraints},
booktitle = {Computational Methods in Systems Biology - 17th International Conference,
{CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11773},
pages = {266--285},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-31304-3\_14},
doi = {10.1007/978-3-030-31304-3\_14},
timestamp = {Tue, 17 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/AllartNV19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/AssafH019,
author = {George Assaf and
Monika Heiner and
Fei Liu},
editor = {Luca Bortolussi and
Guido Sanguinetti},
title = {Biochemical Reaction Networks with Fuzzy Kinetic Parameters in Snoopy},
booktitle = {Computational Methods in Systems Biology - 17th International Conference,
{CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11773},
pages = {302--307},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-31304-3\_17},
doi = {10.1007/978-3-030-31304-3\_17},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/AssafH019.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BackenkohlerBW19,
author = {Michael Backenk{\"{o}}hler and
Luca Bortolussi and
Verena Wolf},
editor = {Luca Bortolussi and
Guido Sanguinetti},
title = {Control Variates for Stochastic Simulation of Chemical Reaction Networks},
booktitle = {Computational Methods in Systems Biology - 17th International Conference,
{CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11773},
pages = {42--59},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-31304-3\_3},
doi = {10.1007/978-3-030-31304-3\_3},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/BackenkohlerBW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BackenkohlerBW19a,
author = {Michael Backenk{\"{o}}hler and
Luca Bortolussi and
Verena Wolf},
editor = {Luca Bortolussi and
Guido Sanguinetti},
title = {Bounding First Passage Times in Chemical Reaction Networks - Poster
Abstract},
booktitle = {Computational Methods in Systems Biology - 17th International Conference,
{CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11773},
pages = {379--382},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-31304-3\_31},
doi = {10.1007/978-3-030-31304-3\_31},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/BackenkohlerBW19a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BentriouBC19,
author = {Mahmoud Bentriou and
Paolo Ballarini and
Paul{-}Henry Courn{\`{e}}de},
editor = {Luca Bortolussi and
Guido Sanguinetti},
title = {Reachability Design Through Approximate Bayesian Computation},
booktitle = {Computational Methods in Systems Biology - 17th International Conference,
{CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11773},
pages = {207--223},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-31304-3\_11},
doi = {10.1007/978-3-030-31304-3\_11},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/BentriouBC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BokesS19,
author = {Pavol Bokes and
Abhyudai Singh},
editor = {Luca Bortolussi and
Guido Sanguinetti},
title = {Cell Volume Distributions in Exponentially Growing Populations},
booktitle = {Computational Methods in Systems Biology - 17th International Conference,
{CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11773},
pages = {140--154},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-31304-3\_8},
doi = {10.1007/978-3-030-31304-3\_8},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/BokesS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Boutillier19,
author = {Pierre Boutillier},
editor = {Luca Bortolussi and
Guido Sanguinetti},
title = {The Kappa Simulator Made Interactive},
booktitle = {Computational Methods in Systems Biology - 17th International Conference,
{CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11773},
pages = {296--301},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-31304-3\_16},
doi = {10.1007/978-3-030-31304-3\_16},
timestamp = {Mon, 23 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/Boutillier19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/ChodakH19,
author = {Jacek Chodak and
Monika Heiner},
editor = {Luca Bortolussi and
Guido Sanguinetti},
title = {Spike - Reproducible Simulation Experiments with Configuration File
Branching},
booktitle = {Computational Methods in Systems Biology - 17th International Conference,
{CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11773},
pages = {315--321},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-31304-3\_19},
doi = {10.1007/978-3-030-31304-3\_19},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/ChodakH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/DegrandHF19,
author = {Elisabeth Degrand and
Mathieu Hemery and
Fran{\c{c}}ois Fages},
editor = {Luca Bortolussi and
Guido Sanguinetti},
title = {On Chemical Reaction Network Design by a Nested Evolution Algorithm},
booktitle = {Computational Methods in Systems Biology - 17th International Conference,
{CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11773},
pages = {78--95},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-31304-3\_5},
doi = {10.1007/978-3-030-31304-3\_5},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/DegrandHF19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/GoldfederK19,
author = {Judah Goldfeder and
Hillel Kugler},
editor = {Luca Bortolussi and
Guido Sanguinetti},
title = {{BRE:} {IN} - {A} Backend for Reasoning About Interaction Networks
with Temporal Logic},
booktitle = {Computational Methods in Systems Biology - 17th International Conference,
{CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11773},
pages = {289--295},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-31304-3\_15},
doi = {10.1007/978-3-030-31304-3\_15},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/GoldfederK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/GuetHIPS19,
author = {Calin C. Guet and
Thomas A. Henzinger and
Claudia Igler and
Tatjana Petrov and
Ali Sezgin},
editor = {Luca Bortolussi and
Guido Sanguinetti},
title = {Transient Memory in Gene Regulation},
booktitle = {Computational Methods in Systems Biology - 17th International Conference,
{CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11773},
pages = {155--187},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-31304-3\_9},
doi = {10.1007/978-3-030-31304-3\_9},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/GuetHIPS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/GuptaKS19,
author = {Ankit Gupta and
Mustafa Khammash and
Guido Sanguinetti},
editor = {Luca Bortolussi and
Guido Sanguinetti},
title = {Bayesian Parameter Estimation for Stochastic Reaction Networks from
Steady-State Observations},
booktitle = {Computational Methods in Systems Biology - 17th International Conference,
{CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11773},
pages = {342--346},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-31304-3\_23},
doi = {10.1007/978-3-030-31304-3\_23},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/GuptaKS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/HajnalNPS19,
author = {Matej Hajnal and
Morgane Nouvian and
Tatjana Petrov and
David Safr{\'{a}}nek},
editor = {Luca Bortolussi and
Guido Sanguinetti},
title = {Data-Informed Parameter Synthesis for Population Markov Chains},
booktitle = {Computational Methods in Systems Biology - 17th International Conference,
{CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11773},
pages = {383--386},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-31304-3\_32},
doi = {10.1007/978-3-030-31304-3\_32},
timestamp = {Tue, 17 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/HajnalNPS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/HarmerO19,
author = {Russ Harmer and
Eugenia Oshurko},
editor = {Luca Bortolussi and
Guido Sanguinetti},
title = {KAMIStudio: An Environment for Biocuration of Cellular Signalling
Knowledge},
booktitle = {Computational Methods in Systems Biology - 17th International Conference,
{CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11773},
pages = {322--328},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-31304-3\_20},
doi = {10.1007/978-3-030-31304-3\_20},
timestamp = {Mon, 23 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/HarmerO19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/InnocentiniAHR19,
author = {Guilherme C. P. Innocentini and
Fernando Antoneli and
Arran Hodgkinson and
Ovidiu Radulescu},
editor = {Luca Bortolussi and
Guido Sanguinetti},
title = {Effective Computational Methods for Hybrid Stochastic Gene Networks},
booktitle = {Computational Methods in Systems Biology - 17th International Conference,
{CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11773},
pages = {60--77},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-31304-3\_4},
doi = {10.1007/978-3-030-31304-3\_4},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/InnocentiniAHR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/LampSBNF19,
author = {Josephine Lamp and
Simone Silvetti and
Marc D. Breton and
Laura Nenzi and
Lu Feng},
editor = {Luca Bortolussi and
Guido Sanguinetti},
title = {A Logic-Based Learning Approach to Explore Diabetes Patient Behaviors},
booktitle = {Computational Methods in Systems Biology - 17th International Conference,
{CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11773},
pages = {188--206},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-31304-3\_10},
doi = {10.1007/978-3-030-31304-3\_10},
timestamp = {Wed, 22 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/LampSBNF19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/LortonPRW19,
author = {Christopher W. Lorton and
Joshua L. Proctor and
Min K. Roh and
Philip A. Welkhoff},
editor = {Luca Bortolussi and
Guido Sanguinetti},
title = {Compartmental Modeling Software: {A} Fast, Discrete Stochastic Framework
for Biochemical and Epidemiological Simulation},
booktitle = {Computational Methods in Systems Biology - 17th International Conference,
{CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11773},
pages = {308--314},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-31304-3\_18},
doi = {10.1007/978-3-030-31304-3\_18},
timestamp = {Tue, 17 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/LortonPRW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/MandonSH0P19,
author = {Hugues Mandon and
Cui Su and
Stefan Haar and
Jun Pang and
Lo{\"{\i}}c Paulev{\'{e}}},
editor = {Luca Bortolussi and
Guido Sanguinetti},
title = {Sequential Reprogramming of Boolean Networks Made Practical},
booktitle = {Computational Methods in Systems Biology - 17th International Conference,
{CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11773},
pages = {3--19},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-31304-3\_1},
doi = {10.1007/978-3-030-31304-3\_1},
timestamp = {Tue, 17 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/MandonSH0P19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/MartinelliGSF19,
author = {Julien Martinelli and
Jeremy Grignard and
Sylvain Soliman and
Fran{\c{c}}ois Fages},
editor = {Luca Bortolussi and
Guido Sanguinetti},
title = {On Inferring Reactions from Data Time Series by a Statistical Learning
Greedy Heuristics},
booktitle = {Computational Methods in Systems Biology - 17th International Conference,
{CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11773},
pages = {352--355},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-31304-3\_25},
doi = {10.1007/978-3-030-31304-3\_25},
timestamp = {Tue, 17 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/MartinelliGSF19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/NowickaS19,
author = {Melania Nowicka and
Heike Siebert},
editor = {Luca Bortolussi and
Guido Sanguinetti},
title = {Designing Distributed Cell Classifier Circuits Using a Genetic Algorithm},
booktitle = {Computational Methods in Systems Biology - 17th International Conference,
{CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11773},
pages = {96--119},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-31304-3\_6},
doi = {10.1007/978-3-030-31304-3\_6},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/NowickaS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/OcalGS19,
author = {Kaan {\"{O}}cal and
Ramon Grima and
Guido Sanguinetti},
editor = {Luca Bortolussi and
Guido Sanguinetti},
title = {Wasserstein Distances for Estimating Parameters in Stochastic Reaction
Networks},
booktitle = {Computational Methods in Systems Biology - 17th International Conference,
{CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11773},
pages = {347--351},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-31304-3\_24},
doi = {10.1007/978-3-030-31304-3\_24},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/OcalGS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/PardoID19,
author = {J{\'{e}}r{\'{e}}mie Pardo and
Sergiu Ivanov and
Franck Delaplace},
editor = {Luca Bortolussi and
Guido Sanguinetti},
title = {Sequential Reprogramming of Biological Network Fate},
booktitle = {Computational Methods in Systems Biology - 17th International Conference,
{CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11773},
pages = {20--41},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-31304-3\_2},
doi = {10.1007/978-3-030-31304-3\_2},
timestamp = {Thu, 19 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/PardoID19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Perez-VeronaTV19,
author = {Isabel Cristina P{\'{e}}rez{-}Verona and
Mirco Tribastone and
Andrea Vandin},
editor = {Luca Bortolussi and
Guido Sanguinetti},
title = {A Large-Scale Assessment of Exact Model Reduction in the BioModels
Repository},
booktitle = {Computational Methods in Systems Biology - 17th International Conference,
{CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11773},
pages = {248--265},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-31304-3\_13},
doi = {10.1007/978-3-030-31304-3\_13},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/Perez-VeronaTV19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/PihoMBRH19,
author = {Paul Piho and
Filip Margetiny and
Ezio Bartocci and
Richard R. Ribchester and
Jane Hillston},
editor = {Luca Bortolussi and
Guido Sanguinetti},
title = {Extending a Hodgkin-Huxley Model for Larval Drosophila Muscle Excitability
via Particle Swarm Fitting},
booktitle = {Computational Methods in Systems Biology - 17th International Conference,
{CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11773},
pages = {120--139},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-31304-3\_7},
doi = {10.1007/978-3-030-31304-3\_7},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/PihoMBRH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/PribylovaL19,
author = {Lenka Pribylov{\'{a}} and
Barbora Losov{\'{a}}},
editor = {Luca Bortolussi and
Guido Sanguinetti},
title = {Symmetry Breaking for {GATA-1/PU.1} Model},
booktitle = {Computational Methods in Systems Biology - 17th International Conference,
{CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11773},
pages = {360--363},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-31304-3\_27},
doi = {10.1007/978-3-030-31304-3\_27},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/PribylovaL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/SaccomaniBAd19,
author = {Maria Pia Saccomani and
Giuseppina Bellu and
Stefania Audoly and
Leontina D'Angi{\`{o}}},
editor = {Luca Bortolussi and
Guido Sanguinetti},
title = {A New Version of {DAISY} to Test Structural Identifiability of Biological
Models},
booktitle = {Computational Methods in Systems Biology - 17th International Conference,
{CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11773},
pages = {329--334},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-31304-3\_21},
doi = {10.1007/978-3-030-31304-3\_21},
timestamp = {Mon, 23 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/SaccomaniBAd19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/SafranekTBVPDPP19,
author = {David Safr{\'{a}}nek and
Matej Troj{\'{a}}k and
Vojtech Bruza and
Tom{\'{a}}s Vejpustek and
Jan Papousek and
Martin Demko and
Samuel Pastva and
Ales Pejznoch and
Lubos Brim},
editor = {Luca Bortolussi and
Guido Sanguinetti},
title = {Barbaric Robustness Monitoring Revisited for STL* in Parasim},
booktitle = {Computational Methods in Systems Biology - 17th International Conference,
{CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11773},
pages = {356--359},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-31304-3\_26},
doi = {10.1007/978-3-030-31304-3\_26},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/SafranekTBVPDPP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/SpaccasassiYPD19,
author = {Carlo Spaccasassi and
Boyan Yordanov and
Andrew Phillips and
Neil Dalchau},
editor = {Luca Bortolussi and
Guido Sanguinetti},
title = {Fast Enumeration of Non-isomorphic Chemical Reaction Networks},
booktitle = {Computational Methods in Systems Biology - 17th International Conference,
{CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11773},
pages = {224--247},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-31304-3\_12},
doi = {10.1007/978-3-030-31304-3\_12},
timestamp = {Tue, 17 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/SpaccasassiYPD19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/SuP019,
author = {Cui Su and
Soumya Paul and
Jun Pang},
editor = {Luca Bortolussi and
Guido Sanguinetti},
title = {Scalable Control of Asynchronous Boolean Networks},
booktitle = {Computational Methods in Systems Biology - 17th International Conference,
{CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11773},
pages = {364--367},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-31304-3\_28},
doi = {10.1007/978-3-030-31304-3\_28},
timestamp = {Tue, 17 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/SuP019.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/VertesAAKPSBKNP19,
author = {Akos Vertes and
Albert{-}Baskar Arul and
Peter Avar and
Andrew R. Korte and
Lida Parvin and
Ziad J. Sahab and
Deborah I. Bunin and
Merrill Knapp and
Denise Nishita and
Andrew Poggio and
Mark{-}Oliver Stehr and
Carolyn L. Talcott and
Brian M. Davis and
Christine A. Morton and
Christopher J. Sevinsky and
Maria I. Zavodszky},
editor = {Luca Bortolussi and
Guido Sanguinetti},
title = {Transcriptional Response of {SK-N-AS} Cells to Methamidophos (Extended
Abstract)},
booktitle = {Computational Methods in Systems Biology - 17th International Conference,
{CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11773},
pages = {368--372},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-31304-3\_29},
doi = {10.1007/978-3-030-31304-3\_29},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/VertesAAKPSBKNP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/cmsb/2019,
editor = {Luca Bortolussi and
Guido Sanguinetti},
title = {Computational Methods in Systems Biology - 17th International Conference,
{CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11773},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-31304-3},
doi = {10.1007/978-3-030-31304-3},
isbn = {978-3-030-31303-6},
timestamp = {Tue, 17 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/2019.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/AbateCKLY18,
author = {Alessandro Abate and
Luca Cardelli and
Marta Kwiatkowska and
Luca Laurenti and
Boyan Yordanov},
editor = {Milan Ceska and
David Safr{\'{a}}nek},
title = {Experimental Biological Protocols with Formal Semantics},
booktitle = {Computational Methods in Systems Biology - 16th International Conference,
{CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11095},
pages = {165--182},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-99429-1\_10},
doi = {10.1007/978-3-319-99429-1\_10},
timestamp = {Wed, 30 Oct 2019 16:34:37 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/AbateCKLY18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BokesHS18,
author = {Pavol Bokes and
Michal Hojcka and
Abhyudai Singh},
editor = {Milan Ceska and
David Safr{\'{a}}nek},
title = {Buffering Gene Expression Noise by MicroRNA Based Feedforward Regulation},
booktitle = {Computational Methods in Systems Biology - 16th International Conference,
{CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11095},
pages = {129--145},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-99429-1\_8},
doi = {10.1007/978-3-319-99429-1\_8},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/BokesHS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BortolussiP18,
author = {Luca Bortolussi and
Luca Palmieri},
editor = {Milan Ceska and
David Safr{\'{a}}nek},
title = {Deep Abstractions of Chemical Reaction Networks},
booktitle = {Computational Methods in Systems Biology - 16th International Conference,
{CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11095},
pages = {21--38},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-99429-1\_2},
doi = {10.1007/978-3-319-99429-1\_2},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/BortolussiP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BoutillierCCFLT18,
author = {Pierre Boutillier and
Ferdinanda Camporesi and
Jean Coquet and
J{\'{e}}r{\^{o}}me Feret and
Kim Quy{\^{e}}n L{\'{y}} and
Nathalie Th{\'{e}}ret and
Pierre Vignet},
editor = {Milan Ceska and
David Safr{\'{a}}nek},
title = {KaSa: {A} Static Analyzer for Kappa},
booktitle = {Computational Methods in Systems Biology - 16th International Conference,
{CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11095},
pages = {285--291},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-99429-1\_17},
doi = {10.1007/978-3-319-99429-1\_17},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/BoutillierCCFLT18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BreikCDHS18,
author = {Keenan Breik and
Cameron T. Chalk and
David Doty and
David Haley and
David Soloveichik},
editor = {Milan Ceska and
David Safr{\'{a}}nek},
title = {Programming Substrate-Independent Kinetic Barriers with Thermodynamic
Binding Networks},
booktitle = {Computational Methods in Systems Biology - 16th International Conference,
{CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11095},
pages = {203--219},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-99429-1\_12},
doi = {10.1007/978-3-319-99429-1\_12},
timestamp = {Mon, 16 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/BreikCDHS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/ChalkKRS18,
author = {Cameron T. Chalk and
Niels Kornerup and
Wyatt Reeves and
David Soloveichik},
editor = {Milan Ceska and
David Safr{\'{a}}nek},
title = {Composable Rate-Independent Computation in Continuous Chemical Reaction
Networks},
booktitle = {Computational Methods in Systems Biology - 16th International Conference,
{CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11095},
pages = {256--273},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-99429-1\_15},
doi = {10.1007/978-3-319-99429-1\_15},
timestamp = {Mon, 27 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/ChalkKRS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/DuttaKS18,
author = {Souradeep Dutta and
Taisa Kushner and
Sriram Sankaranarayanan},
editor = {Milan Ceska and
David Safr{\'{a}}nek},
title = {Robust Data-Driven Control of Artificial Pancreas Systems Using Neural
Networks},
booktitle = {Computational Methods in Systems Biology - 16th International Conference,
{CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11095},
pages = {183--202},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-99429-1\_11},
doi = {10.1007/978-3-319-99429-1\_11},
timestamp = {Fri, 06 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/DuttaKS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/FagesS18,
author = {Fran{\c{c}}ois Fages and
Sylvain Soliman},
editor = {Milan Ceska and
David Safr{\'{a}}nek},
title = {On Robustness Computation and Optimization in {BIOCHAM-4}},
booktitle = {Computational Methods in Systems Biology - 16th International Conference,
{CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11095},
pages = {292--299},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-99429-1\_18},
doi = {10.1007/978-3-319-99429-1\_18},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/FagesS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/FeigelmanWTMH18,
author = {Justin Feigelman and
Daniel Weindl and
Fabian J. Theis and
Carsten Marr and
Jan Hasenauer},
editor = {Milan Ceska and
David Safr{\'{a}}nek},
title = {{LNA++:} Linear Noise Approximation with First and Second Order Sensitivities},
booktitle = {Computational Methods in Systems Biology - 16th International Conference,
{CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11095},
pages = {300--306},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-99429-1\_19},
doi = {10.1007/978-3-319-99429-1\_19},
timestamp = {Mon, 27 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/FeigelmanWTMH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/GuptaMS18,
author = {Ashutosh Gupta and
Somya Mani and
Ankit Shukla},
editor = {Milan Ceska and
David Safr{\'{a}}nek},
title = {Synthesis for Vesicle Traffic Systems},
booktitle = {Computational Methods in Systems Biology - 16th International Conference,
{CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11095},
pages = {93--110},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-99429-1\_6},
doi = {10.1007/978-3-319-99429-1\_6},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/GuptaMS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/GuvenWWEH18,
author = {Emine G{\"{u}}ven and
Michael J. Wester and
Bridget S. Wilson and
Jeremy S. Edwards and
{\'{A}}d{\'{a}}m M. Hal{\'{a}}sz},
editor = {Milan Ceska and
David Safr{\'{a}}nek},
title = {Characterization of the Experimentally Observed Clustering of {VEGF}
Receptors},
booktitle = {Computational Methods in Systems Biology - 16th International Conference,
{CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11095},
pages = {75--92},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-99429-1\_5},
doi = {10.1007/978-3-319-99429-1\_5},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/GuvenWWEH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/KuglerDY18,
author = {Hillel Kugler and
Sara{-}Jane Dunn and
Boyan Yordanov},
editor = {Milan Ceska and
David Safr{\'{a}}nek},
title = {Formal Analysis of Network Motifs},
booktitle = {Computational Methods in Systems Biology - 16th International Conference,
{CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11095},
pages = {111--128},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-99429-1\_7},
doi = {10.1007/978-3-319-99429-1\_7},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/KuglerDY18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/LaurentMBYF18,
author = {Jonathan Laurent and
H{\'{e}}ctor F. Medina{-}Abarca and
Pierre Boutillier and
Jean Yang and
Walter Fontana},
editor = {Milan Ceska and
David Safr{\'{a}}nek},
title = {A Trace Query Language for Rule-Based Models},
booktitle = {Computational Methods in Systems Biology - 16th International Conference,
{CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11095},
pages = {220--237},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-99429-1\_13},
doi = {10.1007/978-3-319-99429-1\_13},
timestamp = {Mon, 27 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/LaurentMBYF18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/MizeraP0Y18,
author = {Andrzej Mizera and
Jun Pang and
Hongyang Qu and
Qixia Yuan},
editor = {Milan Ceska and
David Safr{\'{a}}nek},
title = {{ASSA-PBN} 3.0: Analysing Context-Sensitive Probabilistic Boolean
Networks},
booktitle = {Computational Methods in Systems Biology - 16th International Conference,
{CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11095},
pages = {277--284},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-99429-1\_16},
doi = {10.1007/978-3-319-99429-1\_16},
timestamp = {Sat, 31 Aug 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/MizeraP0Y18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Modrak18,
author = {Martin Modr{\'{a}}k},
editor = {Milan Ceska and
David Safr{\'{a}}nek},
title = {Reparametrizing the Sigmoid Model of Gene Regulation for Bayesian
Inference},
booktitle = {Computational Methods in Systems Biology - 16th International Conference,
{CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11095},
pages = {309--312},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-99429-1\_20},
doi = {10.1007/978-3-319-99429-1\_20},
timestamp = {Thu, 13 Sep 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/Modrak18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/OliveiraBSKR18,
author = {Samuel M. D. Oliveira and
Mohamed N. M. Bahrudeen and
Sofia Startceva and
Vinodh Kandavalli and
Andre S. Ribeiro},
editor = {Milan Ceska and
David Safr{\'{a}}nek},
title = {Modeling and Engineering Promoters with Pre-defined {RNA} Production
Dynamics in Escherichia Coli},
booktitle = {Computational Methods in Systems Biology - 16th International Conference,
{CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11095},
pages = {3--20},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-99429-1\_1},
doi = {10.1007/978-3-319-99429-1\_1},
timestamp = {Thu, 13 Sep 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/OliveiraBSKR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/PaulPS18,
author = {Soumya Paul and
Jun Pang and
Cui Su},
editor = {Milan Ceska and
David Safr{\'{a}}nek},
title = {On the Full Control of Boolean Networks},
booktitle = {Computational Methods in Systems Biology - 16th International Conference,
{CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11095},
pages = {313--317},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-99429-1\_21},
doi = {10.1007/978-3-319-99429-1\_21},
timestamp = {Sat, 31 Aug 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/PaulPS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/RadwanS18,
author = {Golestan Sally Radwan and
Hugh P. Shanahan},
editor = {Milan Ceska and
David Safr{\'{a}}nek},
title = {Systems Metagenomics: Applying Systems Biology Thinking to Human Microbiome
Analysis},
booktitle = {Computational Methods in Systems Biology - 16th International Conference,
{CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11095},
pages = {318--321},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-99429-1\_22},
doi = {10.1007/978-3-319-99429-1\_22},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/RadwanS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/RazzaqK0SBG18,
author = {Misbah Razzaq and
Roland Kaminski and
Javier Romero and
Torsten Schaub and
J{\'{e}}r{\'{e}}mie Bourdon and
Carito Guziolowski},
editor = {Milan Ceska and
David Safr{\'{a}}nek},
title = {Computing Diverse Boolean Networks from Phosphoproteomic Time Series
Data},
booktitle = {Computational Methods in Systems Biology - 16th International Conference,
{CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11095},
pages = {59--74},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-99429-1\_4},
doi = {10.1007/978-3-319-99429-1\_4},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/RazzaqK0SBG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/RevellZ18,
author = {Jeremy Revell and
Paolo Zuliani},
editor = {Milan Ceska and
David Safr{\'{a}}nek},
title = {Stochastic Rate Parameter Inference Using the Cross-Entropy Method},
booktitle = {Computational Methods in Systems Biology - 16th International Conference,
{CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11095},
pages = {146--164},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-99429-1\_9},
doi = {10.1007/978-3-319-99429-1\_9},
timestamp = {Wed, 03 Oct 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/RevellZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/SelfGH18,
author = {Timothy Self and
David R. Gilbert and
Monika Heiner},
editor = {Milan Ceska and
David Safr{\'{a}}nek},
title = {Derivation of a Biomass Proxy for Dynamic Analysis of Whole Genome
Metabolic Models},
booktitle = {Computational Methods in Systems Biology - 16th International Conference,
{CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11095},
pages = {39--58},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-99429-1\_3},
doi = {10.1007/978-3-319-99429-1\_3},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/SelfGH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/VertesAAKLNPSHS18,
author = {Akos Vertes and
Albert{-}Baskar Arul and
Peter Avar and
Andrew R. Korte and
Hang Li and
Peter Nemes and
Lida Parvin and
Sylwia Stopka and
Sunil Hwang and
Ziad J. Sahab and
Linwen Zhang and
Deborah I. Bunin and
Merrill Knapp and
Andrew Poggio and
Mark{-}Oliver Stehr and
Carolyn L. Talcott and
Brian M. Davis and
Sean R. Dinn and
Christine A. Morton and
Christopher J. Sevinsky and
Maria I. Zavodszky},
editor = {Milan Ceska and
David Safr{\'{a}}nek},
title = {Inferring Mechanism of Action of an Unknown Compound from Time Series
Omics Data},
booktitle = {Computational Methods in Systems Biology - 16th International Conference,
{CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11095},
pages = {238--255},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-99429-1\_14},
doi = {10.1007/978-3-319-99429-1\_14},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/VertesAAKLNPSHS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/cmsb/2018,
editor = {Milan Ceska and
David Safr{\'{a}}nek},
title = {Computational Methods in Systems Biology - 16th International Conference,
{CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11095},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-99429-1},
doi = {10.1007/978-3-319-99429-1},
isbn = {978-3-319-99428-4},
timestamp = {Wed, 30 Oct 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/2018.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/AbbasRBSG17,
author = {Houssam Abbas and
Al{\"{e}}na Rodionova and
Ezio Bartocci and
Scott A. Smolka and
Radu Grosu},
editor = {J{\'{e}}r{\^{o}}me Feret and
Heinz Koeppl},
title = {Quantitative Regular Expressions for Arrhythmia Detection Algorithms},
booktitle = {Computational Methods in Systems Biology - 15th International Conference,
{CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10545},
pages = {23--39},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-67471-1\_2},
doi = {10.1007/978-3-319-67471-1\_2},
timestamp = {Mon, 18 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/AbbasRBSG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BarnatBBDHPS17,
author = {Jiri Barnat and
Nikola Benes and
Lubos Brim and
Martin Demko and
Matej Hajnal and
Samuel Pastva and
David Safr{\'{a}}nek},
editor = {J{\'{e}}r{\^{o}}me Feret and
Heinz Koeppl},
title = {Detecting Attractors in Biological Models with Uncertain Parameters},
booktitle = {Computational Methods in Systems Biology - 15th International Conference,
{CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10545},
pages = {40--56},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-67471-1\_3},
doi = {10.1007/978-3-319-67471-1\_3},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/BarnatBBDHPS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BianeD17,
author = {C{\'{e}}lia Biane and
Franck Delaplace},
editor = {J{\'{e}}r{\^{o}}me Feret and
Heinz Koeppl},
title = {Abduction Based Drug Target Discovery Using Boolean Control Network},
booktitle = {Computational Methods in Systems Biology - 15th International Conference,
{CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10545},
pages = {57--73},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-67471-1\_4},
doi = {10.1007/978-3-319-67471-1\_4},
timestamp = {Mon, 18 Sep 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/BianeD17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BobaH17,
author = {Patrick Boba and
Kay Hamacher},
editor = {J{\'{e}}r{\^{o}}me Feret and
Heinz Koeppl},
title = {TransferEntropyPT: An {R} Package to Assess Transfer Entropies via
Permutation Tests},
booktitle = {Computational Methods in Systems Biology - 15th International Conference,
{CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10545},
pages = {285--290},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-67471-1\_17},
doi = {10.1007/978-3-319-67471-1\_17},
timestamp = {Mon, 18 Sep 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/BobaH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/CamporesiFL17,
author = {Ferdinanda Camporesi and
J{\'{e}}r{\^{o}}me Feret and
Kim Quy{\^{e}}n L{\'{y}}},
editor = {J{\'{e}}r{\^{o}}me Feret and
Heinz Koeppl},
title = {KaDE: {A} Tool to Compile Kappa Rules into (Reduced) {ODE} Models},
booktitle = {Computational Methods in Systems Biology - 15th International Conference,
{CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10545},
pages = {291--299},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-67471-1\_18},
doi = {10.1007/978-3-319-67471-1\_18},
timestamp = {Mon, 18 Sep 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/CamporesiFL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/CarcanoFS17,
author = {Arthur Carcano and
Fran{\c{c}}ois Fages and
Sylvain Soliman},
editor = {J{\'{e}}r{\^{o}}me Feret and
Heinz Koeppl},
title = {Probably Approximately Correct Learning of Regulatory Networks from
Time-Series Data},
booktitle = {Computational Methods in Systems Biology - 15th International Conference,
{CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10545},
pages = {74--90},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-67471-1\_5},
doi = {10.1007/978-3-319-67471-1\_5},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/CarcanoFS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/CoquetTLD17,
author = {Jean Coquet and
Nathalie Th{\'{e}}ret and
Vincent Legagneux and
Olivier Dameron},
editor = {J{\'{e}}r{\^{o}}me Feret and
Heinz Koeppl},
title = {Identifying Functional Families of Trajectories in Biological Pathways
by Soft Clustering: Application to TGF-{\(\beta\)} Signaling},
booktitle = {Computational Methods in Systems Biology - 15th International Conference,
{CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10545},
pages = {91--107},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-67471-1\_6},
doi = {10.1007/978-3-319-67471-1\_6},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/CoquetTLD17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/CumminsGHM17,
author = {Bree Cummins and
Tom{\'{a}}s Gedeon and
Shaun Harker and
Konstantin Mischaikow},
editor = {J{\'{e}}r{\^{o}}me Feret and
Heinz Koeppl},
title = {Database of Dynamic Signatures Generated by Regulatory Networks {(DSGRN)}},
booktitle = {Computational Methods in Systems Biology - 15th International Conference,
{CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10545},
pages = {300--308},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-67471-1\_19},
doi = {10.1007/978-3-319-67471-1\_19},
timestamp = {Mon, 18 Sep 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/CumminsGHM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/FagesGBP17,
author = {Fran{\c{c}}ois Fages and
Guillaume Le Guludec and
Olivier Bournez and
Amaury Pouly},
editor = {J{\'{e}}r{\^{o}}me Feret and
Heinz Koeppl},
title = {Strong Turing Completeness of Continuous Chemical Reaction Networks
and Compilation of Mixed Analog-Digital Programs},
booktitle = {Computational Methods in Systems Biology - 15th International Conference,
{CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10545},
pages = {108--127},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-67471-1\_7},
doi = {10.1007/978-3-319-67471-1\_7},
timestamp = {Mon, 18 Sep 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/FagesGBP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/HarmerCLO17,
author = {Russ Harmer and
Yves{-}Stan Le Cornec and
S{\'{e}}bastien L{\'{e}}gar{\'{e}} and
Ievgeniia Oshurko},
editor = {J{\'{e}}r{\^{o}}me Feret and
Heinz Koeppl},
title = {Bio-Curation for Cellular Signalling: The {KAMI} Project},
booktitle = {Computational Methods in Systems Biology - 15th International Conference,
{CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10545},
pages = {3--19},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-67471-1\_1},
doi = {10.1007/978-3-319-67471-1\_1},
timestamp = {Mon, 18 Sep 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/HarmerCLO17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/KlingerH17,
author = {Emmanuel Klinger and
Jan Hasenauer},
editor = {J{\'{e}}r{\^{o}}me Feret and
Heinz Koeppl},
title = {A Scheme for Adaptive Selection of Population Sizes in Approximate
Bayesian Computation - Sequential Monte Carlo},
booktitle = {Computational Methods in Systems Biology - 15th International Conference,
{CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10545},
pages = {128--144},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-67471-1\_8},
doi = {10.1007/978-3-319-67471-1\_8},
timestamp = {Mon, 18 Sep 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/KlingerH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/LiangWTRSM17,
author = {Kai{-}Wen Liang and
Qinsi Wang and
Cheryl Telmer and
Divyaa Ravichandran and
Peter Spirtes and
Natasa Miskov{-}Zivanov},
editor = {J{\'{e}}r{\^{o}}me Feret and
Heinz Koeppl},
title = {Methods to Expand Cell Signaling Models Using Automated Reading and
Model Checking},
booktitle = {Computational Methods in Systems Biology - 15th International Conference,
{CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10545},
pages = {145--159},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-67471-1\_9},
doi = {10.1007/978-3-319-67471-1\_9},
timestamp = {Mon, 18 Sep 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/LiangWTRSM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/LuckGWW17,
author = {Alexander L{\"{u}}ck and
Pascal Giehr and
J{\"{o}}rn Walter and
Verena Wolf},
editor = {J{\'{e}}r{\^{o}}me Feret and
Heinz Koeppl},
title = {A Stochastic Model for the Formation of Spatial Methylation Patterns},
booktitle = {Computational Methods in Systems Biology - 15th International Conference,
{CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10545},
pages = {160--178},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-67471-1\_10},
doi = {10.1007/978-3-319-67471-1\_10},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/LuckGWW17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/MandonHP17,
author = {Hugues Mandon and
Stefan Haar and
Lo{\"{\i}}c Paulev{\'{e}}},
editor = {J{\'{e}}r{\^{o}}me Feret and
Heinz Koeppl},
title = {Temporal Reprogramming of Boolean Networks},
booktitle = {Computational Methods in Systems Biology - 15th International Conference,
{CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10545},
pages = {179--195},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-67471-1\_11},
doi = {10.1007/978-3-319-67471-1\_11},
timestamp = {Mon, 18 Sep 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/MandonHP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/MiraglioBCF17,
author = {Benjamin Miraglio and
Gilles Bernot and
Jean{-}Paul Comet and
Christine Risso{-}de Faverney},
editor = {J{\'{e}}r{\^{o}}me Feret and
Heinz Koeppl},
title = {Detecting Toxicity Pathways with a Formal Framework Based on Equilibrium
Changes},
booktitle = {Computational Methods in Systems Biology - 15th International Conference,
{CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10545},
pages = {196--213},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-67471-1\_12},
doi = {10.1007/978-3-319-67471-1\_12},
timestamp = {Mon, 18 Sep 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/MiraglioBCF17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/PaolettiLSL17,
author = {Nicola Paoletti and
Kin Sum Liu and
Scott A. Smolka and
Shan Lin},
editor = {J{\'{e}}r{\^{o}}me Feret and
Heinz Koeppl},
title = {Data-Driven Robust Control for Type 1 Diabetes Under Meal and Exercise
Uncertainties},
booktitle = {Computational Methods in Systems Biology - 15th International Conference,
{CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10545},
pages = {214--232},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-67471-1\_13},
doi = {10.1007/978-3-319-67471-1\_13},
timestamp = {Wed, 10 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/PaolettiLSL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Pauleve17,
author = {Lo{\"{\i}}c Paulev{\'{e}}},
editor = {J{\'{e}}r{\^{o}}me Feret and
Heinz Koeppl},
title = {Pint: {A} Static Analyzer for Transient Dynamics of Qualitative Networks
with IPython Interface},
booktitle = {Computational Methods in Systems Biology - 15th International Conference,
{CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10545},
pages = {309--316},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-67471-1\_20},
doi = {10.1007/978-3-319-67471-1\_20},
timestamp = {Mon, 18 Sep 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/Pauleve17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/SchwiegerS17,
author = {Robert Schwieger and
Heike Siebert},
editor = {J{\'{e}}r{\^{o}}me Feret and
Heinz Koeppl},
title = {Graph Representations of Monotonic Boolean Model Pools},
booktitle = {Computational Methods in Systems Biology - 15th International Conference,
{CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10545},
pages = {233--248},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-67471-1\_14},
doi = {10.1007/978-3-319-67471-1\_14},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/SchwiegerS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/TalcottK17,
author = {Carolyn L. Talcott and
Merrill Knapp},
editor = {J{\'{e}}r{\^{o}}me Feret and
Heinz Koeppl},
title = {Explaining Response to Drugs Using Pathway Logic},
booktitle = {Computational Methods in Systems Biology - 15th International Conference,
{CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10545},
pages = {249--264},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-67471-1\_15},
doi = {10.1007/978-3-319-67471-1\_15},
timestamp = {Mon, 18 Sep 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/TalcottK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/ZhouRWT17,
author = {Jun Zhou and
R. Ramanathan and
Weng{-}Fai Wong and
P. S. Thiagarajan},
editor = {J{\'{e}}r{\^{o}}me Feret and
Heinz Koeppl},
title = {Automated Property Synthesis of ODEs Based Bio-pathways Models},
booktitle = {Computational Methods in Systems Biology - 15th International Conference,
{CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10545},
pages = {265--282},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-67471-1\_16},
doi = {10.1007/978-3-319-67471-1\_16},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/ZhouRWT17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/cmsb/2017,
editor = {J{\'{e}}r{\^{o}}me Feret and
Heinz Koeppl},
title = {Computational Methods in Systems Biology - 15th International Conference,
{CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10545},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-67471-1},
doi = {10.1007/978-3-319-67471-1},
isbn = {978-3-319-67470-4},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/2017.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/AbdallahRMRI16,
author = {Emna Ben Abdallah and
Tony Ribeiro and
Morgan Magnin and
Olivier F. Roux and
Katsumi Inoue},
editor = {Ezio Bartocci and
Pietro Li{\`{o}} and
Nicola Paoletti},
title = {Inference of Delayed Biological Regulatory Networks from Time Series
Data},
booktitle = {Computational Methods in Systems Biology - 14th International Conference,
{CMSB} 2016, Cambridge, UK, September 21-23, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9859},
pages = {30--48},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-45177-0\_3},
doi = {10.1007/978-3-319-45177-0\_3},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/AbdallahRMRI16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BackenkohlerBW16,
author = {Michael Backenk{\"{o}}hler and
Luca Bortolussi and
Verena Wolf},
editor = {Ezio Bartocci and
Pietro Li{\`{o}} and
Nicola Paoletti},
title = {Generalized Method of Moments for Stochastic Reaction Networks in
Equilibrium},
booktitle = {Computational Methods in Systems Biology - 14th International Conference,
{CMSB} 2016, Cambridge, UK, September 21-23, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9859},
pages = {15--29},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-45177-0\_2},
doi = {10.1007/978-3-319-45177-0\_2},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/BackenkohlerBW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/CaravagnaBS16,
author = {Giulio Caravagna and
Luca Bortolussi and
Guido Sanguinetti},
editor = {Ezio Bartocci and
Pietro Li{\`{o}} and
Nicola Paoletti},
title = {Matching Models Across Abstraction Levels with Gaussian Processes},
booktitle = {Computational Methods in Systems Biology - 14th International Conference,
{CMSB} 2016, Cambridge, UK, September 21-23, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9859},
pages = {49--66},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-45177-0\_4},
doi = {10.1007/978-3-319-45177-0\_4},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/CaravagnaBS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/CardelliKL16,
author = {Luca Cardelli and
Marta Kwiatkowska and
Luca Laurenti},
editor = {Ezio Bartocci and
Pietro Li{\`{o}} and
Nicola Paoletti},
title = {A Stochastic Hybrid Approximation for Chemical Kinetics Based on the
Linear Noise Approximation},
booktitle = {Computational Methods in Systems Biology - 14th International Conference,
{CMSB} 2016, Cambridge, UK, September 21-23, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9859},
pages = {147--167},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-45177-0\_10},
doi = {10.1007/978-3-319-45177-0\_10},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/CardelliKL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/CzeizlerGCKP16,
author = {Eugen Czeizler and
Cristian Gratie and
Wu Kai Chiu and
Krishna Kanhaiya and
Ion Petre},
editor = {Ezio Bartocci and
Pietro Li{\`{o}} and
Nicola Paoletti},
title = {Target Controllability of Linear Networks},
booktitle = {Computational Methods in Systems Biology - 14th International Conference,
{CMSB} 2016, Cambridge, UK, September 21-23, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9859},
pages = {67--81},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-45177-0\_5},
doi = {10.1007/978-3-319-45177-0\_5},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/CzeizlerGCKP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/DemkoBBPS16,
author = {Martin Demko and
Nikola Benes and
Lubos Brim and
Samuel Pastva and
David Safr{\'{a}}nek},
editor = {Ezio Bartocci and
Pietro Li{\`{o}} and
Nicola Paoletti},
title = {High-Performance Symbolic Parameter Synthesis of Biological Models:
{A} Case Study},
booktitle = {Computational Methods in Systems Biology - 14th International Conference,
{CMSB} 2016, Cambridge, UK, September 21-23, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9859},
pages = {82--97},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-45177-0\_6},
doi = {10.1007/978-3-319-45177-0\_6},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/DemkoBBPS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Despeyroux16,
author = {Jo{\"{e}}lle Despeyroux},
editor = {Ezio Bartocci and
Pietro Li{\`{o}} and
Nicola Paoletti},
title = {(Mathematical) Logic for Systems Biology (Invited Paper)},
booktitle = {Computational Methods in Systems Biology - 14th International Conference,
{CMSB} 2016, Cambridge, UK, September 21-23, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9859},
pages = {3--12},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-45177-0\_1},
doi = {10.1007/978-3-319-45177-0\_1},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/Despeyroux16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/FagesMRS16,
author = {Fran{\c{c}}ois Fages and
Thierry Martinez and
David A. Rosenblueth and
Sylvain Soliman},
editor = {Ezio Bartocci and
Pietro Li{\`{o}} and
Nicola Paoletti},
title = {Influence Systems vs Reaction Systems},
booktitle = {Computational Methods in Systems Biology - 14th International Conference,
{CMSB} 2016, Cambridge, UK, September 21-23, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9859},
pages = {98--115},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-45177-0\_7},
doi = {10.1007/978-3-319-45177-0\_7},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/FagesMRS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/FeretL16,
author = {J{\'{e}}r{\^{o}}me Feret and
Kim Quy{\^{e}}n L{\'{y}}},
editor = {Ezio Bartocci and
Pietro Li{\`{o}} and
Nicola Paoletti},
title = {Local Traces: An Over-Approximation of the Behaviour of the Proteins
in Rule-Based Models},
booktitle = {Computational Methods in Systems Biology - 14th International Conference,
{CMSB} 2016, Cambridge, UK, September 21-23, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9859},
pages = {116--131},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-45177-0\_8},
doi = {10.1007/978-3-319-45177-0\_8},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/FeretL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/IslamBKCCFGJS16,
author = {Md. Ariful Islam and
Greg Byrne and
Soonho Kong and
Edmund M. Clarke and
Rance Cleaveland and
Flavio H. Fenton and
Radu Grosu and
Paul L. Jones and
Scott A. Smolka},
editor = {Ezio Bartocci and
Pietro Li{\`{o}} and
Nicola Paoletti},
title = {Bifurcation Analysis of Cardiac Alternans Using {\textbackslash}delta
-Decidability},
booktitle = {Computational Methods in Systems Biology - 14th International Conference,
{CMSB} 2016, Cambridge, UK, September 21-23, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9859},
pages = {132--146},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-45177-0\_9},
doi = {10.1007/978-3-319-45177-0\_9},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/IslamBKCCFGJS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/LoM16,
author = {Chieh Lo and
Radu Marculescu},
editor = {Ezio Bartocci and
Pietro Li{\`{o}} and
Nicola Paoletti},
title = {Autonomous and Adaptive Control of Populations of Bacteria Through
Environment Regulation},
booktitle = {Computational Methods in Systems Biology - 14th International Conference,
{CMSB} 2016, Cambridge, UK, September 21-23, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9859},
pages = {168--185},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-45177-0\_11},
doi = {10.1007/978-3-319-45177-0\_11},
timestamp = {Sat, 16 Sep 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/LoM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/LoosFH16,
author = {Carolin Loos and
Anna Fiedler and
Jan Hasenauer},
editor = {Ezio Bartocci and
Pietro Li{\`{o}} and
Nicola Paoletti},
title = {Parameter Estimation for Reaction Rate Equation Constrained Mixture
Models},
booktitle = {Computational Methods in Systems Biology - 14th International Conference,
{CMSB} 2016, Cambridge, UK, September 21-23, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9859},
pages = {186--200},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-45177-0\_12},
doi = {10.1007/978-3-319-45177-0\_12},
timestamp = {Sat, 16 Sep 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/LoosFH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/MadelaineTLN16,
author = {Guillaume Madelaine and
Elisa Tonello and
C{\'{e}}dric Lhoussaine and
Joachim Niehren},
editor = {Ezio Bartocci and
Pietro Li{\`{o}} and
Nicola Paoletti},
title = {Normalizing Chemical Reaction Networks by Confluent Structural Simplification},
booktitle = {Computational Methods in Systems Biology - 14th International Conference,
{CMSB} 2016, Cambridge, UK, September 21-23, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9859},
pages = {201--215},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-45177-0\_13},
doi = {10.1007/978-3-319-45177-0\_13},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/MadelaineTLN16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/MizeraPY16,
author = {Andrzej Mizera and
Jun Pang and
Qixia Yuan},
editor = {Ezio Bartocci and
Pietro Li{\`{o}} and
Nicola Paoletti},
title = {Fast Simulation of Probabilistic Boolean Networks},
booktitle = {Computational Methods in Systems Biology - 14th International Conference,
{CMSB} 2016, Cambridge, UK, September 21-23, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9859},
pages = {216--231},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-45177-0\_14},
doi = {10.1007/978-3-319-45177-0\_14},
timestamp = {Sat, 31 Aug 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/MizeraPY16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/MizeraPY16a,
author = {Andrzej Mizera and
Jun Pang and
Qixia Yuan},
editor = {Ezio Bartocci and
Pietro Li{\`{o}} and
Nicola Paoletti},
title = {{ASSA-PBN} 2.0: {A} Software Tool for Probabilistic Boolean Networks},
booktitle = {Computational Methods in Systems Biology - 14th International Conference,
{CMSB} 2016, Cambridge, UK, September 21-23, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9859},
pages = {309--315},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-45177-0\_19},
doi = {10.1007/978-3-319-45177-0\_19},
timestamp = {Sat, 31 Aug 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/MizeraPY16a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/MuD0R16,
author = {Chunyan Mu and
Peter Dittrich and
David Parker and
Jonathan E. Rowe},
editor = {Ezio Bartocci and
Pietro Li{\`{o}} and
Nicola Paoletti},
title = {Formal Quantitative Analysis of Reaction Networks Using Chemical Organisation
Theory},
booktitle = {Computational Methods in Systems Biology - 14th International Conference,
{CMSB} 2016, Cambridge, UK, September 21-23, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9859},
pages = {232--251},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-45177-0\_15},
doi = {10.1007/978-3-319-45177-0\_15},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/MuD0R16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Pauleve16,
author = {Lo{\"{\i}}c Paulev{\'{e}}},
editor = {Ezio Bartocci and
Pietro Li{\`{o}} and
Nicola Paoletti},
title = {Goal-Oriented Reduction of Automata Networks},
booktitle = {Computational Methods in Systems Biology - 14th International Conference,
{CMSB} 2016, Cambridge, UK, September 21-23, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9859},
pages = {252--272},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-45177-0\_16},
doi = {10.1007/978-3-319-45177-0\_16},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/Pauleve16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Sommer-SimpsonR16,
author = {Jasha Sommer{-}Simpson and
John Reinitz and
Leonid Fridlyand and
Louis Philipson and
Ovidiu Radulescu},
editor = {Ezio Bartocci and
Pietro Li{\`{o}} and
Nicola Paoletti},
title = {Hybrid Reductions of Computational Models of Ion Channels Coupled
to Cellular Biochemistry},
booktitle = {Computational Methods in Systems Biology - 14th International Conference,
{CMSB} 2016, Cambridge, UK, September 21-23, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9859},
pages = {273--288},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-45177-0\_17},
doi = {10.1007/978-3-319-45177-0\_17},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/Sommer-SimpsonR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/TrojakSHSRC16,
author = {Matej Troj{\'{a}}k and
David Safr{\'{a}}nek and
Jakub Hrabec and
Jakub Salagovic and
Frantiska Romanovsk{\'{a}} and
Jan Cerven{\'{y}}},
editor = {Ezio Bartocci and
Pietro Li{\`{o}} and
Nicola Paoletti},
title = {E-Cyanobacterium.org: {A} Web-Based Platform for Systems Biology of
Cyanobacteria},
booktitle = {Computational Methods in Systems Biology - 14th International Conference,
{CMSB} 2016, Cambridge, UK, September 21-23, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9859},
pages = {316--322},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-45177-0\_20},
doi = {10.1007/978-3-319-45177-0\_20},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/TrojakSHSRC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/VillaverdeBB16,
author = {Alejandro Fern{\'{a}}ndez Villaverde and
Kolja Becker and
Julio R. Banga},
editor = {Ezio Bartocci and
Pietro Li{\`{o}} and
Nicola Paoletti},
title = {{PREMER:} Parallel Reverse Engineering of Biological Networks with
Information Theory},
booktitle = {Computational Methods in Systems Biology - 14th International Conference,
{CMSB} 2016, Cambridge, UK, September 21-23, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9859},
pages = {323--329},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-45177-0\_21},
doi = {10.1007/978-3-319-45177-0\_21},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/VillaverdeBB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/WangMLFLC16,
author = {Qinsi Wang and
Natasa Miskov{-}Zivanov and
Bing Liu and
James R. Faeder and
Michael Lotze and
Edmund M. Clarke},
editor = {Ezio Bartocci and
Pietro Li{\`{o}} and
Nicola Paoletti},
title = {Formal Modeling and Analysis of Pancreatic Cancer Microenvironment},
booktitle = {Computational Methods in Systems Biology - 14th International Conference,
{CMSB} 2016, Cambridge, UK, September 21-23, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9859},
pages = {289--305},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-45177-0\_18},
doi = {10.1007/978-3-319-45177-0\_18},
timestamp = {Mon, 06 Nov 2017 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/WangMLFLC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/cmsb/2016,
editor = {Ezio Bartocci and
Pietro Li{\`{o}} and
Nicola Paoletti},
title = {Computational Methods in Systems Biology - 14th International Conference,
{CMSB} 2016, Cambridge, UK, September 21-23, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9859},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-45177-0},
doi = {10.1007/978-3-319-45177-0},
isbn = {978-3-319-45176-3},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/2016.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Abou-JaoudeFT15,
author = {Wassim Abou{-}Jaoud{\'{e}} and
J{\'{e}}r{\^{o}}me Feret and
Denis Thieffry},
editor = {Olivier F. Roux and
J{\'{e}}r{\'{e}}mie Bourdon},
title = {Derivation of Qualitative Dynamical Models from Biochemical Networks},
booktitle = {Computational Methods in Systems Biology - 13th International Conference,
{CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9308},
pages = {195--207},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-23401-4\_17},
doi = {10.1007/978-3-319-23401-4\_17},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/Abou-JaoudeFT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/AndreychenkoMI15,
author = {Alexander Andreychenko and
Morgan Magnin and
Katsumi Inoue},
editor = {Olivier F. Roux and
J{\'{e}}r{\'{e}}mie Bourdon},
title = {Modeling of Resilience Properties in Oscillatory Biological Systems
Using Parametric Time Petri Nets},
booktitle = {Computational Methods in Systems Biology - 13th International Conference,
{CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9308},
pages = {239--250},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-23401-4\_20},
doi = {10.1007/978-3-319-23401-4\_20},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/AndreychenkoMI15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BanksSS15,
author = {Chris J. Banks and
Daniel D. Seaton and
Ian Stark},
editor = {Olivier F. Roux and
J{\'{e}}r{\'{e}}mie Bourdon},
title = {Analysis of a Post-translational Oscillator Using Process Algebra
and Spatio-Temporal Logic},
booktitle = {Computational Methods in Systems Biology - 13th International Conference,
{CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9308},
pages = {222--238},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-23401-4\_19},
doi = {10.1007/978-3-319-23401-4\_19},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/BanksSS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BarbotKMP15,
author = {Beno{\^{\i}}t Barbot and
Marta Z. Kwiatkowska and
Alexandru Mereacre and
Nicola Paoletti},
editor = {Olivier F. Roux and
J{\'{e}}r{\'{e}}mie Bourdon},
title = {Estimation and Verification of Hybrid Heart Models for Personalised
Medical and Wearable Devices},
booktitle = {Computational Methods in Systems Biology - 13th International Conference,
{CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9308},
pages = {3--7},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-23401-4\_1},
doi = {10.1007/978-3-319-23401-4\_1},
timestamp = {Wed, 25 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/BarbotKMP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BernotCR15,
author = {Gilles Bernot and
Jean{-}Paul Comet and
Olivier F. Roux},
editor = {Olivier F. Roux and
J{\'{e}}r{\'{e}}mie Bourdon},
title = {A Genetically Modified Hoare Logic that Identifies the Parameters
of a Gene Network},
booktitle = {Computational Methods in Systems Biology - 13th International Conference,
{CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9308},
pages = {8--12},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-23401-4\_2},
doi = {10.1007/978-3-319-23401-4\_2},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/BernotCR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BogomolovHPRS15,
author = {Sergiy Bogomolov and
Thomas A. Henzinger and
Andreas Podelski and
Jakob Ruess and
Christian Schilling},
editor = {Olivier F. Roux and
J{\'{e}}r{\'{e}}mie Bourdon},
title = {Adaptive Moment Closure for Parameter Inference of Biochemical Reaction
Networks},
booktitle = {Computational Methods in Systems Biology - 13th International Conference,
{CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9308},
pages = {77--89},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-23401-4\_8},
doi = {10.1007/978-3-319-23401-4\_8},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/BogomolovHPRS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BortolussiMS15,
author = {Luca Bortolussi and
Dimitrios Milios and
Guido Sanguinetti},
editor = {Olivier F. Roux and
J{\'{e}}r{\'{e}}mie Bourdon},
title = {Efficient Stochastic Simulation of Systems with Multiple Time Scales
via Statistical Abstraction},
booktitle = {Computational Methods in Systems Biology - 13th International Conference,
{CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9308},
pages = {40--51},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-23401-4\_5},
doi = {10.1007/978-3-319-23401-4\_5},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/BortolussiMS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BrimCDPS15,
author = {Lubos Brim and
Milan Ceska and
Martin Demko and
Samuel Pastva and
David Safr{\'{a}}nek},
editor = {Olivier F. Roux and
J{\'{e}}r{\'{e}}mie Bourdon},
title = {Parameter Synthesis by Parallel Coloured {CTL} Model Checking},
booktitle = {Computational Methods in Systems Biology - 13th International Conference,
{CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9308},
pages = {251--263},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-23401-4\_21},
doi = {10.1007/978-3-319-23401-4\_21},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/BrimCDPS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BudinichBLE15,
author = {Marko Budinich and
J{\'{e}}r{\'{e}}mie Bourdon and
Abdelhalim Larhlimi and
Damien Eveillard},
editor = {Olivier F. Roux and
J{\'{e}}r{\'{e}}mie Bourdon},
title = {{OPINION} {PAPER} Evolutionary Constraint-Based Formulation Requires
New Bi-level Solving Techniques},
booktitle = {Computational Methods in Systems Biology - 13th International Conference,
{CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9308},
pages = {279--281},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-23401-4\_23},
doi = {10.1007/978-3-319-23401-4\_23},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/BudinichBLE15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/CamachoTR15,
author = {Francy Camacho and
Rodrigo Torres and
Ra{\'{u}}l Ramos{-}Poll{\'{a}}n},
editor = {Olivier F. Roux and
J{\'{e}}r{\'{e}}mie Bourdon},
title = {Feature Learning Using Stacked Autoencoders to Predict the Activity
of Antimicrobial Peptides},
booktitle = {Computational Methods in Systems Biology - 13th International Conference,
{CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9308},
pages = {121--132},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-23401-4\_11},
doi = {10.1007/978-3-319-23401-4\_11},
timestamp = {Mon, 06 Nov 2017 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/CamachoTR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/CardelliKL15,
author = {Luca Cardelli and
Marta Z. Kwiatkowska and
Luca Laurenti},
editor = {Olivier F. Roux and
J{\'{e}}r{\'{e}}mie Bourdon},
title = {Stochastic Analysis of Chemical Reaction Networks Using Linear Noise
Approximation},
booktitle = {Computational Methods in Systems Biology - 13th International Conference,
{CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9308},
pages = {64--76},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-23401-4\_7},
doi = {10.1007/978-3-319-23401-4\_7},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/CardelliKL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/GnimpiebaTCCL15,
author = {Etienne Z. Gnimpieba and
Mathialakan Thavappiragasam and
Abalo Chango and
Bill Conn and
Carol M. Lushbough},
editor = {Olivier F. Roux and
J{\'{e}}r{\'{e}}mie Bourdon},
title = {SBMLDock: Docker Driven Systems Biology Tool Development and Usage},
booktitle = {Computational Methods in Systems Biology - 13th International Conference,
{CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9308},
pages = {282--285},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-23401-4\_24},
doi = {10.1007/978-3-319-23401-4\_24},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/GnimpiebaTCCL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/LoosMTH15,
author = {Carolin Loos and
Carsten Marr and
Fabian J. Theis and
Jan Hasenauer},
editor = {Olivier F. Roux and
J{\'{e}}r{\'{e}}mie Bourdon},
title = {Approximate Bayesian Computation for Stochastic Single-Cell Time-Lapse
Data Using Multivariate Test Statistics},
booktitle = {Computational Methods in Systems Biology - 13th International Conference,
{CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9308},
pages = {52--63},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-23401-4\_6},
doi = {10.1007/978-3-319-23401-4\_6},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/LoosMTH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/MadelaineLN15,
author = {Guillaume Madelaine and
C{\'{e}}dric Lhoussaine and
Joachim Niehren},
editor = {Olivier F. Roux and
J{\'{e}}r{\'{e}}mie Bourdon},
title = {Structural Simplification of Chemical Reaction Networks Preserving
Deterministic Semantics},
booktitle = {Computational Methods in Systems Biology - 13th International Conference,
{CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9308},
pages = {133--144},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-23401-4\_12},
doi = {10.1007/978-3-319-23401-4\_12},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/MadelaineLN15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/MadsenSZ15,
author = {Curtis Madsen and
Fedor Shmarov and
Paolo Zuliani},
editor = {Olivier F. Roux and
J{\'{e}}r{\'{e}}mie Bourdon},
title = {BioPSy: An SMT-based Tool for Guaranteed Parameter Set Synthesis of
Biological Models},
booktitle = {Computational Methods in Systems Biology - 13th International Conference,
{CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9308},
pages = {182--194},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-23401-4\_16},
doi = {10.1007/978-3-319-23401-4\_16},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/MadsenSZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/NiehrenJVCJ15,
author = {Joachim Niehren and
Mathias John and
Cristian Versari and
Fran{\c{c}}ois Coutte and
Philippe Jacques},
editor = {Olivier F. Roux and
J{\'{e}}r{\'{e}}mie Bourdon},
title = {Qualitative Reasoning for Reaction Networks with Partial Kinetic Information},
booktitle = {Computational Methods in Systems Biology - 13th International Conference,
{CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9308},
pages = {157--169},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-23401-4\_14},
doi = {10.1007/978-3-319-23401-4\_14},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/NiehrenJVCJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/NigamDKMT15,
author = {Vivek Nigam and
Robin Donaldson and
Merrill Knapp and
Tim McCarthy and
Carolyn L. Talcott},
editor = {Olivier F. Roux and
J{\'{e}}r{\'{e}}mie Bourdon},
title = {Inferring Executable Models from Formalized Experimental Evidence},
booktitle = {Computational Methods in Systems Biology - 13th International Conference,
{CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9308},
pages = {90--103},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-23401-4\_9},
doi = {10.1007/978-3-319-23401-4\_9},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/NigamDKMT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/OstrowskiPSSG15,
author = {Max Ostrowski and
Lo{\"{\i}}c Paulev{\'{e}} and
Torsten Schaub and
Anne Siegel and
Carito Guziolowski},
editor = {Olivier F. Roux and
J{\'{e}}r{\'{e}}mie Bourdon},
title = {Boolean Network Identification from Multiplex Time Series Data},
booktitle = {Computational Methods in Systems Biology - 13th International Conference,
{CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9308},
pages = {170--181},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-23401-4\_15},
doi = {10.1007/978-3-319-23401-4\_15},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/OstrowskiPSSG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/RadulescuSNG015,
author = {Ovidiu Radulescu and
Satya Swarup Samal and
Aur{\'{e}}lien Naldi and
Dima Grigoriev and
Andreas Weber},
editor = {Olivier F. Roux and
J{\'{e}}r{\'{e}}mie Bourdon},
title = {Symbolic Dynamics of Biochemical Pathways as Finite States Machines},
booktitle = {Computational Methods in Systems Biology - 13th International Conference,
{CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9308},
pages = {104--120},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-23401-4\_10},
doi = {10.1007/978-3-319-23401-4\_10},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/RadulescuSNG015.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/RozanskiBRK15,
author = {Robert Rozanski and
Stefano Bragaglia and
Oliver Ray and
Ross D. King},
editor = {Olivier F. Roux and
J{\'{e}}r{\'{e}}mie Bourdon},
title = {Automating the Development of Metabolic Network Models},
booktitle = {Computational Methods in Systems Biology - 13th International Conference,
{CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9308},
pages = {145--156},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-23401-4\_13},
doi = {10.1007/978-3-319-23401-4\_13},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/RozanskiBRK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/StreckTS15,
author = {Adam Streck and
Kirsten Thobe and
Heike Siebert},
editor = {Olivier F. Roux and
J{\'{e}}r{\'{e}}mie Bourdon},
title = {Analysing Cell Line Specific {EGFR} Signalling via Optimized Automata
Based Model Checking},
booktitle = {Computational Methods in Systems Biology - 13th International Conference,
{CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9308},
pages = {264--276},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-23401-4\_22},
doi = {10.1007/978-3-319-23401-4\_22},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/StreckTS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/TraynardFS15,
author = {Pauline Traynard and
Fran{\c{c}}ois Fages and
Sylvain Soliman},
editor = {Olivier F. Roux and
J{\'{e}}r{\'{e}}mie Bourdon},
title = {Model-Based Investigation of the Effect of the Cell Cycle on the Circadian
Clock Through Transcription Inhibition During Mitosis},
booktitle = {Computational Methods in Systems Biology - 13th International Conference,
{CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9308},
pages = {208--221},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-23401-4\_18},
doi = {10.1007/978-3-319-23401-4\_18},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/TraynardFS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Trejo-BanosMS15,
author = {Daniel Trejo{-}Ba{\~{n}}os and
Andrew J. Millar and
Guido Sanguinetti},
editor = {Olivier F. Roux and
J{\'{e}}r{\'{e}}mie Bourdon},
title = {Experimental Design for Inference over the A. thaliana Circadian Clock
Network},
booktitle = {Computational Methods in Systems Biology - 13th International Conference,
{CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9308},
pages = {28--39},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-23401-4\_4},
doi = {10.1007/978-3-319-23401-4\_4},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/Trejo-BanosMS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/WangZKGC15,
author = {Qinsi Wang and
Paolo Zuliani and
Soonho Kong and
Sicun Gao and
Edmund M. Clarke},
editor = {Olivier F. Roux and
J{\'{e}}r{\'{e}}mie Bourdon},
title = {SReach: {A} Probabilistic Bounded Delta-Reachability Analyzer for
Stochastic Hybrid Systems},
booktitle = {Computational Methods in Systems Biology - 13th International Conference,
{CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9308},
pages = {15--27},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-23401-4\_3},
doi = {10.1007/978-3-319-23401-4\_3},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/WangZKGC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/cmsb/2015,
editor = {Olivier F. Roux and
J{\'{e}}r{\'{e}}mie Bourdon},
title = {Computational Methods in Systems Biology - 13th International Conference,
{CMSB} 2015, Nantes, France, September 16-18, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9308},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-23401-4},
doi = {10.1007/978-3-319-23401-4},
isbn = {978-3-319-23400-7},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/2015.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BittigRBU14,
author = {Arne T. Bittig and
Florian Reinhardt and
Simone Baltrusch and
Adelinde M. Uhrmacher},
editor = {Pedro Mendes and
Joseph O. Dada and
Kieran Smallbone},
title = {Predictive Modelling of Mitochondrial Spatial Structure and Health},
booktitle = {Computational Methods in Systems Biology - 12th International Conference,
{CMSB} 2014, Manchester, UK, November 17-19, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8859},
pages = {252--255},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-12982-2\_20},
doi = {10.1007/978-3-319-12982-2\_20},
timestamp = {Sat, 09 Apr 2022 12:36:34 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/BittigRBU14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BombieriDSFLG14,
author = {Nicola Bombieri and
Rosario Distefano and
Giovanni Scardoni and
Franco Fummi and
Carlo Laudanna and
Rosalba Giugno},
editor = {Pedro Mendes and
Joseph O. Dada and
Kieran Smallbone},
title = {Dynamic Modeling and Simulation of Leukocyte Integrin Activation through
an Electronic Design Automation Framework},
booktitle = {Computational Methods in Systems Biology - 12th International Conference,
{CMSB} 2014, Manchester, UK, November 17-19, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8859},
pages = {143--154},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-12982-2\_11},
doi = {10.1007/978-3-319-12982-2\_11},
timestamp = {Thu, 15 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/BombieriDSFLG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/CeskaDKP14,
author = {Milan Ceska and
Frits Dannenberg and
Marta Z. Kwiatkowska and
Nicola Paoletti},
editor = {Pedro Mendes and
Joseph O. Dada and
Kieran Smallbone},
title = {Precise Parameter Synthesis for Stochastic Biochemical Systems},
booktitle = {Computational Methods in Systems Biology - 12th International Conference,
{CMSB} 2014, Manchester, UK, November 17-19, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8859},
pages = {86--98},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-12982-2\_7},
doi = {10.1007/978-3-319-12982-2\_7},
timestamp = {Wed, 30 Oct 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/CeskaDKP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/ChatainHJPS14,
author = {Thomas Chatain and
Stefan Haar and
Lo{\"{\i}}g Jezequel and
Lo{\"{\i}}c Paulev{\'{e}} and
Stefan Schwoon},
editor = {Pedro Mendes and
Joseph O. Dada and
Kieran Smallbone},
title = {Characterization of Reachable Attractors Using Petri Net Unfoldings},
booktitle = {Computational Methods in Systems Biology - 12th International Conference,
{CMSB} 2014, Manchester, UK, November 17-19, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8859},
pages = {129--142},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-12982-2\_10},
doi = {10.1007/978-3-319-12982-2\_10},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/ChatainHJPS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/CostaNHV14,
author = {Rafael S. Costa and
Son Nguyen and
Andr{\'{a}}s Hartmann and
Susana Vinga},
editor = {Pedro Mendes and
Joseph O. Dada and
Kieran Smallbone},
title = {Exploring the Cellular Objective in Flux Balance Constraint-Based
Models},
booktitle = {Computational Methods in Systems Biology - 12th International Conference,
{CMSB} 2014, Manchester, UK, November 17-19, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8859},
pages = {211--224},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-12982-2\_15},
doi = {10.1007/978-3-319-12982-2\_15},
timestamp = {Fri, 02 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/CostaNHV14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/DelepineCF14,
author = {Baudoin Del{\'{e}}pine and
Pablo Carbonell and
Jean{-}Loup Faulon},
editor = {Pedro Mendes and
Joseph O. Dada and
Kieran Smallbone},
title = {{XTMS} in Action: Retrosynthetic Design in the Extended Metabolic
Space of Heterologous Pathways for High-Value Compounds},
booktitle = {Computational Methods in Systems Biology - 12th International Conference,
{CMSB} 2014, Manchester, UK, November 17-19, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8859},
pages = {256--259},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-12982-2\_21},
doi = {10.1007/978-3-319-12982-2\_21},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/DelepineCF14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/FrohlichHTH14,
author = {Fabian Fr{\"{o}}hlich and
Sabrina Hross and
Fabian J. Theis and
Jan Hasenauer},
editor = {Pedro Mendes and
Joseph O. Dada and
Kieran Smallbone},
title = {Radial Basis Function Approximations of Bayesian Parameter Posterior
Densities for Uncertainty Analysis},
booktitle = {Computational Methods in Systems Biology - 12th International Conference,
{CMSB} 2014, Manchester, UK, November 17-19, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8859},
pages = {73--85},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-12982-2\_6},
doi = {10.1007/978-3-319-12982-2\_6},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/FrohlichHTH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/FrohlichTH14,
author = {Fabian Fr{\"{o}}hlich and
Fabian J. Theis and
Jan Hasenauer},
editor = {Pedro Mendes and
Joseph O. Dada and
Kieran Smallbone},
title = {Uncertainty Analysis for Non-identifiable Dynamical Systems: Profile
Likelihoods, Bootstrapping and More},
booktitle = {Computational Methods in Systems Biology - 12th International Conference,
{CMSB} 2014, Manchester, UK, November 17-19, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8859},
pages = {61--72},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-12982-2\_5},
doi = {10.1007/978-3-319-12982-2\_5},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/FrohlichTH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/GaborB14,
author = {Attila G{\'{a}}bor and
Julio R. Banga},
editor = {Pedro Mendes and
Joseph O. Dada and
Kieran Smallbone},
title = {Improved Parameter Estimation in Kinetic Models: Selection and Tuning
of Regularization Methods},
booktitle = {Computational Methods in Systems Biology - 12th International Conference,
{CMSB} 2014, Manchester, UK, November 17-19, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8859},
pages = {45--60},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-12982-2\_4},
doi = {10.1007/978-3-319-12982-2\_4},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/GaborB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/GuptaLR14,
author = {Abhishekh Gupta and
Jason Lloyd{-}Price and
Andre S. Ribeiro},
editor = {Pedro Mendes and
Joseph O. Dada and
Kieran Smallbone},
title = {Modelling Polar Retention of Complexes in Escherichia coli},
booktitle = {Computational Methods in Systems Biology - 12th International Conference,
{CMSB} 2014, Manchester, UK, November 17-19, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8859},
pages = {239--243},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-12982-2\_17},
doi = {10.1007/978-3-319-12982-2\_17},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/GuptaLR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/KohlerKV14,
author = {Agnes K{\"{o}}hler and
Jean Krivine and
Jakob Vidmar},
editor = {Pedro Mendes and
Joseph O. Dada and
Kieran Smallbone},
title = {A Rule-Based Model of Base Excision Repair},
booktitle = {Computational Methods in Systems Biology - 12th International Conference,
{CMSB} 2014, Manchester, UK, November 17-19, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8859},
pages = {173--195},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-12982-2\_13},
doi = {10.1007/978-3-319-12982-2\_13},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/KohlerKV14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/LemaireT14,
author = {Fran{\c{c}}ois Lemaire and
Alexandre Temperville},
editor = {Pedro Mendes and
Joseph O. Dada and
Kieran Smallbone},
title = {On Defining and Computing "Good" Conservation Laws},
booktitle = {Computational Methods in Systems Biology - 12th International Conference,
{CMSB} 2014, Manchester, UK, November 17-19, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8859},
pages = {1--19},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-12982-2\_1},
doi = {10.1007/978-3-319-12982-2\_1},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/LemaireT14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/LintottMPAS14,
author = {Rachel Lintott and
Stephen McMahon and
Kevin Prise and
Celine Addie{-}Lagorio and
Carron Shankland},
editor = {Pedro Mendes and
Joseph O. Dada and
Kieran Smallbone},
title = {Using Process Algebra to Model Radiation Induced Bystander Effects},
booktitle = {Computational Methods in Systems Biology - 12th International Conference,
{CMSB} 2014, Manchester, UK, November 17-19, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8859},
pages = {196--210},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-12982-2\_14},
doi = {10.1007/978-3-319-12982-2\_14},
timestamp = {Fri, 02 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/LintottMPAS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/LiuKGZC14,
author = {Bing Liu and
Soonho Kong and
Sicun Gao and
Paolo Zuliani and
Edmund M. Clarke},
editor = {Pedro Mendes and
Joseph O. Dada and
Kieran Smallbone},
title = {Parameter Synthesis for Cardiac Cell Hybrid Models Using {\(\delta\)}-Decisions},
booktitle = {Computational Methods in Systems Biology - 12th International Conference,
{CMSB} 2014, Manchester, UK, November 17-19, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8859},
pages = {99--113},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-12982-2\_8},
doi = {10.1007/978-3-319-12982-2\_8},
timestamp = {Tue, 22 Aug 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/LiuKGZC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/MaruthiTCCHBA14,
author = {Lakshmeesh R. M. Maruthi and
Ilya Tkachev and
Alfonso Carta and
Eugenio Cinquemani and
Pascal Hersen and
Gr{\'{e}}gory Batt and
Alessandro Abate},
editor = {Pedro Mendes and
Joseph O. Dada and
Kieran Smallbone},
title = {Towards Real-Time Control of Gene Expression at the Single Cell Level:
{A} Stochastic Control Approach},
booktitle = {Computational Methods in Systems Biology - 12th International Conference,
{CMSB} 2014, Manchester, UK, November 17-19, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8859},
pages = {155--172},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-12982-2\_12},
doi = {10.1007/978-3-319-12982-2\_12},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/MaruthiTCCHBA14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Miskov-ZivanovWL14,
author = {Natasa Miskov{-}Zivanov and
Peter Wei and
Chang Sheng Clement Loh},
editor = {Pedro Mendes and
Joseph O. Dada and
Kieran Smallbone},
title = {THiMED: Time in Hierarchical Model Extraction and Design},
booktitle = {Computational Methods in Systems Biology - 12th International Conference,
{CMSB} 2014, Manchester, UK, November 17-19, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8859},
pages = {260--263},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-12982-2\_22},
doi = {10.1007/978-3-319-12982-2\_22},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/Miskov-ZivanovWL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Otero-MurasB14,
author = {Irene Otero{-}Muras and
Julio R. Banga},
editor = {Pedro Mendes and
Joseph O. Dada and
Kieran Smallbone},
title = {Optimization Based Design of Synthetic Oscillators from Standard Biological
Parts},
booktitle = {Computational Methods in Systems Biology - 12th International Conference,
{CMSB} 2014, Manchester, UK, November 17-19, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8859},
pages = {225--238},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-12982-2\_16},
doi = {10.1007/978-3-319-12982-2\_16},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/Otero-MurasB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/PeresMS14,
author = {Sabine P{\'{e}}r{\`{e}}s and
Martin Morterol and
Laurent Simon},
editor = {Pedro Mendes and
Joseph O. Dada and
Kieran Smallbone},
title = {SAT-Based Metabolics Pathways Analysis without Compilation},
booktitle = {Computational Methods in Systems Biology - 12th International Conference,
{CMSB} 2014, Manchester, UK, November 17-19, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8859},
pages = {20--31},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-12982-2\_2},
doi = {10.1007/978-3-319-12982-2\_2},
timestamp = {Tue, 14 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/PeresMS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/StewartGC14,
author = {Donal Stewart and
Stephen Gilmore and
Michael A. Cousin},
editor = {Pedro Mendes and
Joseph O. Dada and
Kieran Smallbone},
title = {FM-Sim: Protocol Definition, Simulation and Rate Inference for Neuroscience
Assays},
booktitle = {Computational Methods in Systems Biology - 12th International Conference,
{CMSB} 2014, Manchester, UK, November 17-19, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8859},
pages = {248--251},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-12982-2\_19},
doi = {10.1007/978-3-319-12982-2\_19},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/StewartGC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/ThobeSKS14,
author = {Kirsten Thobe and
Adam Streck and
Hannes Klarner and
Heike Siebert},
editor = {Pedro Mendes and
Joseph O. Dada and
Kieran Smallbone},
title = {Model Integration and Crosstalk Analysis of Logical Regulatory Networks},
booktitle = {Computational Methods in Systems Biology - 12th International Conference,
{CMSB} 2014, Manchester, UK, November 17-19, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8859},
pages = {32--44},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-12982-2\_3},
doi = {10.1007/978-3-319-12982-2\_3},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/ThobeSKS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/TraynardFS14,
author = {Pauline Traynard and
Fran{\c{c}}ois Fages and
Sylvain Soliman},
editor = {Pedro Mendes and
Joseph O. Dada and
Kieran Smallbone},
title = {Trace Simplifications Preserving Temporal Logic Formulae with Case
Study in a Coupled Model of the Cell Cycle and the Circadian Clock},
booktitle = {Computational Methods in Systems Biology - 12th International Conference,
{CMSB} 2014, Manchester, UK, November 17-19, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8859},
pages = {114--128},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-12982-2\_9},
doi = {10.1007/978-3-319-12982-2\_9},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/TraynardFS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/ZardilisDAS14,
author = {Argyris Zardilis and
Jo{\~{a}}o Dias and
Animesh Acharjee and
James Smith},
editor = {Pedro Mendes and
Joseph O. Dada and
Kieran Smallbone},
title = {Extensible and Executable Stochastic Models of Fatty Acid and Lipid
Metabolism},
booktitle = {Computational Methods in Systems Biology - 12th International Conference,
{CMSB} 2014, Manchester, UK, November 17-19, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8859},
pages = {244--247},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-12982-2\_18},
doi = {10.1007/978-3-319-12982-2\_18},
timestamp = {Wed, 05 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/ZardilisDAS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/cmsb/2014,
editor = {Pedro Mendes and
Joseph O. Dada and
Kieran Smallbone},
title = {Computational Methods in Systems Biology - 12th International Conference,
{CMSB} 2014, Manchester, UK, November 17-19, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8859},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-12982-2},
doi = {10.1007/978-3-319-12982-2},
isbn = {978-3-319-12981-5},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/2014.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/AdivarahanMMI13,
author = {Srivathsan Adivarahan and
Denis Menshykau and
Odyss{\'{e}} Michos and
Dagmar Iber},
editor = {Ashutosh Gupta and
Thomas A. Henzinger},
title = {Dynamic Image-Based Modelling of Kidney Branching Morphogenesis},
booktitle = {Computational Methods in Systems Biology - 11th International Conference,
{CMSB} 2013, Klosterneuburg, Austria, September 22-24, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8130},
pages = {106--119},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40708-6\_9},
doi = {10.1007/978-3-642-40708-6\_9},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/AdivarahanMMI13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BartocciBN13,
author = {Ezio Bartocci and
Luca Bortolussi and
Laura Nenzi},
editor = {Ashutosh Gupta and
Thomas A. Henzinger},
title = {A Temporal Logic Approach to Modular Design of Synthetic Biological
Circuits},
booktitle = {Computational Methods in Systems Biology - 11th International Conference,
{CMSB} 2013, Klosterneuburg, Austria, September 22-24, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8130},
pages = {164--177},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40708-6\_13},
doi = {10.1007/978-3-642-40708-6\_13},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/BartocciBN13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BenteaOB13,
author = {Lucian Bentea and
Peter Csaba {\"{O}}lveczky and
Eduard Bentea},
editor = {Ashutosh Gupta and
Thomas A. Henzinger},
title = {Using Probabilistic Strategies to Formalize and Compare {\(\alpha\)}-Synuclein
Aggregation and Propagation under Different Scenarios},
booktitle = {Computational Methods in Systems Biology - 11th International Conference,
{CMSB} 2013, Klosterneuburg, Austria, September 22-24, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8130},
pages = {92--105},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40708-6\_8},
doi = {10.1007/978-3-642-40708-6\_8},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/BenteaOB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/CamporesiFH13,
author = {Ferdinanda Camporesi and
J{\'{e}}r{\^{o}}me Feret and
Jonathan Hayman},
editor = {Ashutosh Gupta and
Thomas A. Henzinger},
title = {Context-Sensitive Flow Analyses: {A} Hierarchy of Model Reductions},
booktitle = {Computational Methods in Systems Biology - 11th International Conference,
{CMSB} 2013, Klosterneuburg, Austria, September 22-24, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8130},
pages = {220--233},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40708-6\_17},
doi = {10.1007/978-3-642-40708-6\_17},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/CamporesiFH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/ChancellorACMR13,
author = {Courtney Chancellor and
Amine Ammar and
Francisco Chinesta and
Morgan Magnin and
Olivier F. Roux},
editor = {Ashutosh Gupta and
Thomas A. Henzinger},
title = {Linking Discrete and Stochastic Models: The Chemical Master Equation
as a Bridge between Process Hitting and Proper Generalized Decomposition},
booktitle = {Computational Methods in Systems Biology - 11th International Conference,
{CMSB} 2013, Klosterneuburg, Austria, September 22-24, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8130},
pages = {50--63},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40708-6\_5},
doi = {10.1007/978-3-642-40708-6\_5},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/ChancellorACMR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/ChiangFJS13,
author = {Hui{-}Ju Katherine Chiang and
Fran{\c{c}}ois Fages and
Jie{-}Hong R. Jiang and
Sylvain Soliman},
editor = {Ashutosh Gupta and
Thomas A. Henzinger},
title = {On the Hybrid Composition and Simulation of Heterogeneous Biochemical
Models},
booktitle = {Computational Methods in Systems Biology - 11th International Conference,
{CMSB} 2013, Klosterneuburg, Austria, September 22-24, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8130},
pages = {192--205},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40708-6\_15},
doi = {10.1007/978-3-642-40708-6\_15},
timestamp = {Fri, 02 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/ChiangFJS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/DannenbergHK13,
author = {Frits Dannenberg and
Ernst Moritz Hahn and
Marta Z. Kwiatkowska},
editor = {Ashutosh Gupta and
Thomas A. Henzinger},
title = {Computing Cumulative Rewards Using Fast Adaptive Uniformisation},
booktitle = {Computational Methods in Systems Biology - 11th International Conference,
{CMSB} 2013, Klosterneuburg, Austria, September 22-24, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8130},
pages = {33--49},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40708-6\_4},
doi = {10.1007/978-3-642-40708-6\_4},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/DannenbergHK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/FiorettoP13,
author = {Ferdinando Fioretto and
Enrico Pontelli},
editor = {Ashutosh Gupta and
Thomas A. Henzinger},
title = {Constraint Programming in Community-Based Gene Regulatory Network
Inference},
booktitle = {Computational Methods in Systems Biology - 11th International Conference,
{CMSB} 2013, Klosterneuburg, Austria, September 22-24, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8130},
pages = {135--149},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40708-6\_11},
doi = {10.1007/978-3-642-40708-6\_11},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/FiorettoP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/GaborHSB13,
author = {Attila G{\'{a}}bor and
Katalin M. Hangos and
G{\'{a}}bor Szederk{\'{e}}nyi and
Julio R. Banga},
editor = {Ashutosh Gupta and
Thomas A. Henzinger},
title = {On the Verification and Correction of Large-Scale Kinetic Models in
Systems Biology},
booktitle = {Computational Methods in Systems Biology - 11th International Conference,
{CMSB} 2013, Klosterneuburg, Austria, September 22-24, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8130},
pages = {206--219},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40708-6\_16},
doi = {10.1007/978-3-642-40708-6\_16},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/GaborHSB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/GeorgoulasHS13,
author = {Anastasis Georgoulas and
Jane Hillston and
Guido Sanguinetti},
editor = {Ashutosh Gupta and
Thomas A. Henzinger},
title = {ABC-Fun: {A} Probabilistic Programming Language for Biology},
booktitle = {Computational Methods in Systems Biology - 11th International Conference,
{CMSB} 2013, Klosterneuburg, Austria, September 22-24, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8130},
pages = {150--163},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40708-6\_12},
doi = {10.1007/978-3-642-40708-6\_12},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/GeorgoulasHS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/GoldsteinB13,
author = {Yaron A. B. Goldstein and
Alexander Bockmayr},
editor = {Ashutosh Gupta and
Thomas A. Henzinger},
title = {A Lattice-Theoretic Framework for Metabolic Pathway Analysis},
booktitle = {Computational Methods in Systems Biology - 11th International Conference,
{CMSB} 2013, Klosterneuburg, Austria, September 22-24, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8130},
pages = {178--191},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40708-6\_14},
doi = {10.1007/978-3-642-40708-6\_14},
timestamp = {Fri, 02 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/GoldsteinB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/HelmsLSU13,
author = {Tobias Helms and
Martin Luboschik and
Heidrun Schumann and
Adelinde M. Uhrmacher},
editor = {Ashutosh Gupta and
Thomas A. Henzinger},
title = {An Approximate Execution of Rule-Based Multi-level Models},
booktitle = {Computational Methods in Systems Biology - 11th International Conference,
{CMSB} 2013, Klosterneuburg, Austria, September 22-24, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8130},
pages = {19--32},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40708-6\_3},
doi = {10.1007/978-3-642-40708-6\_3},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/HelmsLSU13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/KlannPPK13,
author = {Michael Klann and
Lo{\"{\i}}c Paulev{\'{e}} and
Tatjana Petrov and
Heinz Koeppl},
editor = {Ashutosh Gupta and
Thomas A. Henzinger},
title = {Coarse-Grained Brownian Dynamics Simulation of Rule-Based Models},
booktitle = {Computational Methods in Systems Biology - 11th International Conference,
{CMSB} 2013, Klosterneuburg, Austria, September 22-24, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8130},
pages = {64--77},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40708-6\_6},
doi = {10.1007/978-3-642-40708-6\_6},
timestamp = {Thu, 15 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/KlannPPK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/MikeevSW13,
author = {Linar Mikeev and
Werner Sandmann and
Verena Wolf},
editor = {Ashutosh Gupta and
Thomas A. Henzinger},
title = {Numerical Approximation of Rare Event Probabilities in Biochemically
Reacting Systems},
booktitle = {Computational Methods in Systems Biology - 11th International Conference,
{CMSB} 2013, Klosterneuburg, Austria, September 22-24, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8130},
pages = {5--18},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40708-6\_2},
doi = {10.1007/978-3-642-40708-6\_2},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/MikeevSW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/PalaniappanG0HT13,
author = {Sucheendra K. Palaniappan and
Benjamin M. Gyori and
Bing Liu and
David Hsu and
P. S. Thiagarajan},
editor = {Ashutosh Gupta and
Thomas A. Henzinger},
title = {Statistical Model Checking Based Calibration and Analysis of Bio-pathway
Models},
booktitle = {Computational Methods in Systems Biology - 11th International Conference,
{CMSB} 2013, Klosterneuburg, Austria, September 22-24, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8130},
pages = {120--134},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40708-6\_10},
doi = {10.1007/978-3-642-40708-6\_10},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/PalaniappanG0HT13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/ParvuGHLS13,
author = {Ovidiu Parvu and
David R. Gilbert and
Monika Heiner and
Fei Liu and
Nigel J. Saunders},
editor = {Ashutosh Gupta and
Thomas A. Henzinger},
title = {Modelling and Analysis of Phase Variation in Bacterial Colony Growth},
booktitle = {Computational Methods in Systems Biology - 11th International Conference,
{CMSB} 2013, Klosterneuburg, Austria, September 22-24, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8130},
pages = {78--91},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40708-6\_7},
doi = {10.1007/978-3-642-40708-6\_7},
timestamp = {Fri, 01 Sep 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/ParvuGHLS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/RuessL13,
author = {Jakob Ruess and
John Lygeros},
editor = {Ashutosh Gupta and
Thomas A. Henzinger},
title = {On the Use of the Moment Equations for Parameter Inference, Control
and Experimental Design in Stochastic Biochemical Reaction Networks},
booktitle = {Computational Methods in Systems Biology - 11th International Conference,
{CMSB} 2013, Klosterneuburg, Austria, September 22-24, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8130},
pages = {1--4},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40708-6\_1},
doi = {10.1007/978-3-642-40708-6\_1},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/RuessL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/cmsb/2013,
editor = {Ashutosh Gupta and
Thomas A. Henzinger},
title = {Computational Methods in Systems Biology - 11th International Conference,
{CMSB} 2013, Klosterneuburg, Austria, September 22-24, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8130},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40708-6},
doi = {10.1007/978-3-642-40708-6},
isbn = {978-3-642-40707-9},
timestamp = {Mon, 26 Aug 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/2013.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BallariniMR12,
author = {Paolo Ballarini and
Jarno M{\"{a}}kel{\"{a}} and
Andre S. Ribeiro},
editor = {David R. Gilbert and
Monika Heiner},
title = {Expressive Statistical Model Checking of Genetic Networks with Delayed
Stochastic Dynamics},
booktitle = {Computational Methods in Systems Biology - 10th International Conference,
{CMSB} 2012, London, UK, October 3-5, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7605},
pages = {29--48},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33636-2\_4},
doi = {10.1007/978-3-642-33636-2\_4},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/BallariniMR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BatmanovKLLV12,
author = {Kirill Batmanov and
C{\'{e}}line Kuttler and
Fran{\c{c}}ois Lemaire and
C{\'{e}}dric Lhoussaine and
Cristian Versari},
editor = {David R. Gilbert and
Monika Heiner},
title = {Symmetry-Based Model Reduction for Approximate Stochastic Analysis},
booktitle = {Computational Methods in Systems Biology - 10th International Conference,
{CMSB} 2012, London, UK, October 3-5, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7605},
pages = {49--68},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33636-2\_5},
doi = {10.1007/978-3-642-33636-2\_5},
timestamp = {Fri, 02 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/BatmanovKLLV12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BennettLPUHRST12,
author = {Laura Bennett and
Artem Lysenko and
Lazaros G. Papageorgiou and
Martin Urban and
Kim E. Hammond{-}Kosack and
Christopher J. Rawlings and
Mansoor A. S. Saqi and
Sophia Tsoka},
editor = {David R. Gilbert and
Monika Heiner},
title = {Detection of Multi-clustered Genes and Community Structure for the
Plant Pathogenic Fungus Fusarium graminearum},
booktitle = {Computational Methods in Systems Biology - 10th International Conference,
{CMSB} 2012, London, UK, October 3-5, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7605},
pages = {69--86},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33636-2\_6},
doi = {10.1007/978-3-642-33636-2\_6},
timestamp = {Tue, 21 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/BennettLPUHRST12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BlatkeDHSM12,
author = {Mary Ann Bl{\"{a}}tke and
Anna Dittrich and
Monika Heiner and
Fred Schaper and
Wolfgang Marwan},
editor = {David R. Gilbert and
Monika Heiner},
title = {{JAK-STAT} Signalling as Example for a Database-Supported Modular
Modelling Concept},
booktitle = {Computational Methods in Systems Biology - 10th International Conference,
{CMSB} 2012, London, UK, October 3-5, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7605},
pages = {362--365},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33636-2\_21},
doi = {10.1007/978-3-642-33636-2\_21},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/BlatkeDHSM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BlatkeHM12,
author = {Mary Ann Bl{\"{a}}tke and
Monika Heiner and
Wolfgang Marwan},
editor = {David R. Gilbert and
Monika Heiner},
title = {Predicting Phenotype from Genotype through Automatically Composed
Petri Nets},
booktitle = {Computational Methods in Systems Biology - 10th International Conference,
{CMSB} 2012, London, UK, October 3-5, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7605},
pages = {87--106},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33636-2\_7},
doi = {10.1007/978-3-642-33636-2\_7},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/BlatkeHM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/CartaCG12,
author = {Alfonso Carta and
Madalena Chaves and
Jean{-}Luc Gouz{\'{e}}},
editor = {David R. Gilbert and
Monika Heiner},
title = {A Simple Model to Control Growth Rate of Synthetic E. coli during
the Exponential Phase: Model Analysis and Parameter Estimation},
booktitle = {Computational Methods in Systems Biology - 10th International Conference,
{CMSB} 2012, London, UK, October 3-5, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7605},
pages = {107--126},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33636-2\_8},
doi = {10.1007/978-3-642-33636-2\_8},
timestamp = {Fri, 02 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/CartaCG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/CostanzaCALN12,
author = {Jole Costanza and
Giovanni Carapezza and
Claudio Angione and
Pietro Li{\`{o}} and
Giuseppe Nicosia},
editor = {David R. Gilbert and
Monika Heiner},
title = {Multi-objective Optimisation, Sensitivity and Robustness Analysis
in {FBA} Modelling},
booktitle = {Computational Methods in Systems Biology - 10th International Conference,
{CMSB} 2012, London, UK, October 3-5, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7605},
pages = {127--147},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33636-2\_9},
doi = {10.1007/978-3-642-33636-2\_9},
timestamp = {Wed, 25 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/CostanzaCALN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/DadaM12,
author = {Joseph O. Dada and
Pedro Mendes},
editor = {David R. Gilbert and
Monika Heiner},
title = {ManyCell: {A} Multiscale Simulator for Cellular Systems},
booktitle = {Computational Methods in Systems Biology - 10th International Conference,
{CMSB} 2012, London, UK, October 3-5, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7605},
pages = {366--369},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33636-2\_22},
doi = {10.1007/978-3-642-33636-2\_22},
timestamp = {Tue, 05 Nov 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/DadaM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/DelaplaceKMS12,
author = {Franck Delaplace and
Hanna Klaudel and
Tarek Melliti and
Sylvain Sen{\'{e}}},
editor = {David R. Gilbert and
Monika Heiner},
title = {Analysis of Modular Organisation of Interaction Networks Based on
Asymptotic Dynamics},
booktitle = {Computational Methods in Systems Biology - 10th International Conference,
{CMSB} 2012, London, UK, October 3-5, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7605},
pages = {148--165},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33636-2\_10},
doi = {10.1007/978-3-642-33636-2\_10},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/DelaplaceKMS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/DobrzynskiFNK12,
author = {Maciej Dobrzynski and
Dirk Fey and
Lan K. Nguyen and
Boris N. Kholodenko},
editor = {David R. Gilbert and
Monika Heiner},
title = {Bimodal Protein Distributions in Heterogeneous Oscillating Systems},
booktitle = {Computational Methods in Systems Biology - 10th International Conference,
{CMSB} 2012, London, UK, October 3-5, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7605},
pages = {17--28},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33636-2\_3},
doi = {10.1007/978-3-642-33636-2\_3},
timestamp = {Sat, 24 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/DobrzynskiFNK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/FagesGS12,
author = {Fran{\c{c}}ois Fages and
Steven Gay and
Sylvain Soliman},
editor = {David R. Gilbert and
Monika Heiner},
title = {Inferring Reaction Models from ODEs},
booktitle = {Computational Methods in Systems Biology - 10th International Conference,
{CMSB} 2012, London, UK, October 3-5, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7605},
pages = {370--373},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33636-2\_23},
doi = {10.1007/978-3-642-33636-2\_23},
timestamp = {Fri, 02 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/FagesGS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/FolschettePIMR12,
author = {Maxime Folschette and
Lo{\"{\i}}c Paulev{\'{e}} and
Katsumi Inoue and
Morgan Magnin and
Olivier F. Roux},
editor = {David R. Gilbert and
Monika Heiner},
title = {Concretizing the Process Hitting into Biological Regulatory Networks},
booktitle = {Computational Methods in Systems Biology - 10th International Conference,
{CMSB} 2012, London, UK, October 3-5, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7605},
pages = {166--186},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33636-2\_11},
doi = {10.1007/978-3-642-33636-2\_11},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/FolschettePIMR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Galpin12,
author = {Vashti Galpin},
editor = {David R. Gilbert and
Monika Heiner},
title = {Modelling Trafficking of Proteins within the Mammalian Cell Using
Bio-PEPA},
booktitle = {Computational Methods in Systems Biology - 10th International Conference,
{CMSB} 2012, London, UK, October 3-5, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7605},
pages = {374--377},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33636-2\_24},
doi = {10.1007/978-3-642-33636-2\_24},
timestamp = {Fri, 02 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/Galpin12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/GibbBBAMSGRSKG12,
author = {Matthew Gibb and
Rebecca Burton and
Christian Bollensdorff and
Carlos Afonso and
Tahier Mansoori and
Ulrich Schotten and
David Gavaghan and
Blanca Rodr{\'{\i}}guez and
J{\"{u}}rgen E. Schneider and
Peter Kohl and
Vicente Grau},
editor = {David R. Gilbert and
Monika Heiner},
title = {Resolving the Three-Dimensional Histology of the Heart},
booktitle = {Computational Methods in Systems Biology - 10th International Conference,
{CMSB} 2012, London, UK, October 3-5, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7605},
pages = {2--16},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33636-2\_2},
doi = {10.1007/978-3-642-33636-2\_2},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/GibbBBAMSGRSKG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/HarmerKLLMN12,
author = {Russell Harmer and
Jean Krivine and
{\'{E}}lise Laruelle and
C{\'{e}}dric Lhoussaine and
Guillaume Madelaine and
Mirabelle Nebut},
editor = {David R. Gilbert and
Monika Heiner},
title = {Models of Tet-On System with Epigenetic Effects},
booktitle = {Computational Methods in Systems Biology - 10th International Conference,
{CMSB} 2012, London, UK, October 3-5, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7605},
pages = {378--381},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33636-2\_25},
doi = {10.1007/978-3-642-33636-2\_25},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/HarmerKLLMN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/KawamataAHH12,
author = {Ibuki Kawamata and
Nathanael Aubert and
Masahiro Hamano and
Masami Hagiya},
editor = {David R. Gilbert and
Monika Heiner},
title = {Abstraction of Graph-Based Models of Bio-molecular Reaction Systems
for Efficient Simulation},
booktitle = {Computational Methods in Systems Biology - 10th International Conference,
{CMSB} 2012, London, UK, October 3-5, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7605},
pages = {187--206},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33636-2\_12},
doi = {10.1007/978-3-642-33636-2\_12},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/KawamataAHH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/KlarnerSSKS12,
author = {Hannes Klarner and
Adam Streck and
David Safr{\'{a}}nek and
Juraj Kolc{\'{a}}k and
Heike Siebert},
editor = {David R. Gilbert and
Monika Heiner},
title = {Parameter Identification and Model Ranking of Thomas Networks},
booktitle = {Computational Methods in Systems Biology - 10th International Conference,
{CMSB} 2012, London, UK, October 3-5, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7605},
pages = {207--226},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33636-2\_13},
doi = {10.1007/978-3-642-33636-2\_13},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/KlarnerSSKS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/LaihoKG12,
author = {Asta Laiho and
Andr{\'{a}}s Kir{\'{a}}ly and
Attila Gyenesei},
editor = {David R. Gilbert and
Monika Heiner},
title = {GeneFuncster: {A} Web Tool for Gene Functional Enrichment Analysis
and Visualisation},
booktitle = {Computational Methods in Systems Biology - 10th International Conference,
{CMSB} 2012, London, UK, October 3-5, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7605},
pages = {382--385},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33636-2\_26},
doi = {10.1007/978-3-642-33636-2\_26},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/LaihoKG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/MarcoSCGAMS12,
author = {David Marco and
Erin Scott and
David E. Cairns and
Andrea Graham and
Judi Allen and
Simmi Mahajan and
Carron Shankland},
editor = {David R. Gilbert and
Monika Heiner},
title = {Investigating Co-infection Dynamics through Evolution of Bio-PEPA
Model Parameters: {A} Combined Process Algebra and Evolutionary Computing
Approach},
booktitle = {Computational Methods in Systems Biology - 10th International Conference,
{CMSB} 2012, London, UK, October 3-5, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7605},
pages = {227--246},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33636-2\_14},
doi = {10.1007/978-3-642-33636-2\_14},
timestamp = {Wed, 08 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/MarcoSCGAMS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Martinez-del-AmorPGEP12,
author = {Miguel A. Mart{\'{\i}}nez{-}del{-}Amor and
Ignacio P{\'{e}}rez{-}Hurtado and
Adolfo Gastalver{-}Rubio and
Anne C. Elster and
Mario J. P{\'{e}}rez{-}Jim{\'{e}}nez},
editor = {David R. Gilbert and
Monika Heiner},
title = {Population Dynamics {P} Systems on {CUDA}},
booktitle = {Computational Methods in Systems Biology - 10th International Conference,
{CMSB} 2012, London, UK, October 3-5, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7605},
pages = {247--266},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33636-2\_15},
doi = {10.1007/978-3-642-33636-2\_15},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/Martinez-del-AmorPGEP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/MurthyIBCFGSG12,
author = {Abhishek Murthy and
Md. Ariful Islam and
Ezio Bartocci and
Elizabeth Cherry and
Flavio H. Fenton and
James Glimm and
Scott A. Smolka and
Radu Grosu},
editor = {David R. Gilbert and
Monika Heiner},
title = {Approximate Bisimulations for Sodium Channel Dynamics},
booktitle = {Computational Methods in Systems Biology - 10th International Conference,
{CMSB} 2012, London, UK, October 3-5, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7605},
pages = {267--287},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33636-2\_16},
doi = {10.1007/978-3-642-33636-2\_16},
timestamp = {Fri, 02 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/MurthyIBCFGSG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/NaldiMC12,
author = {Aur{\'{e}}lien Naldi and
Pedro T. Monteiro and
Claudine Chaouiya},
editor = {David R. Gilbert and
Monika Heiner},
title = {Efficient Handling of Large Signalling-Regulatory Networks by Focusing
on Their Core Control},
booktitle = {Computational Methods in Systems Biology - 10th International Conference,
{CMSB} 2012, London, UK, October 3-5, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7605},
pages = {288--306},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33636-2\_17},
doi = {10.1007/978-3-642-33636-2\_17},
timestamp = {Thu, 04 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/NaldiMC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Noble12,
author = {Denis Noble},
editor = {David R. Gilbert and
Monika Heiner},
title = {Differential and Integral Views of Gene-Phenotype Relations: {A} Systems
Biological Insight},
booktitle = {Computational Methods in Systems Biology - 10th International Conference,
{CMSB} 2012, London, UK, October 3-5, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7605},
pages = {1},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33636-2\_1},
doi = {10.1007/978-3-642-33636-2\_1},
timestamp = {Tue, 26 Jun 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/Noble12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/PotapovMYR12,
author = {Ilya Potapov and
Jarno M{\"{a}}kel{\"{a}} and
Olli Yli{-}Harja and
Andre S. Ribeiro},
editor = {David R. Gilbert and
Monika Heiner},
title = {Sequence Dependent Properties of the Expression Dynamics of Genes
and Gene Networks},
booktitle = {Computational Methods in Systems Biology - 10th International Conference,
{CMSB} 2012, London, UK, October 3-5, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7605},
pages = {307--321},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33636-2\_18},
doi = {10.1007/978-3-642-33636-2\_18},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/PotapovMYR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/PotapovV12,
author = {Ilya Potapov and
Evgenii I. Volkov},
editor = {David R. Gilbert and
Monika Heiner},
title = {Effects of Molecular Noise on the Multistability in a Synthetic Genetic
Oscillator},
booktitle = {Computational Methods in Systems Biology - 10th International Conference,
{CMSB} 2012, London, UK, October 3-5, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7605},
pages = {386--389},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33636-2\_27},
doi = {10.1007/978-3-642-33636-2\_27},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/PotapovV12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/SankaranarayananF12,
author = {Sriram Sankaranarayanan and
Georgios Fainekos},
editor = {David R. Gilbert and
Monika Heiner},
title = {Simulating Insulin Infusion Pump Risks by In-Silico Modeling of the
Insulin-Glucose Regulatory System},
booktitle = {Computational Methods in Systems Biology - 10th International Conference,
{CMSB} 2012, London, UK, October 3-5, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7605},
pages = {322--341},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33636-2\_19},
doi = {10.1007/978-3-642-33636-2\_19},
timestamp = {Fri, 13 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/SankaranarayananF12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/SoldatovaGG12,
author = {Larisa N. Soldatova and
Qian Gao and
David R. Gilbert},
editor = {David R. Gilbert and
Monika Heiner},
title = {Towards an Ontology of Biomodelling},
booktitle = {Computational Methods in Systems Biology - 10th International Conference,
{CMSB} 2012, London, UK, October 3-5, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7605},
pages = {390--393},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33636-2\_28},
doi = {10.1007/978-3-642-33636-2\_28},
timestamp = {Wed, 04 Jul 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/SoldatovaGG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/VidelaGETGSS12,
author = {Santiago Videla and
Carito Guziolowski and
Federica Eduati and
Sven Thiele and
Niels Grabe and
Julio Saez{-}Rodriguez and
Anne Siegel},
editor = {David R. Gilbert and
Monika Heiner},
title = {Revisiting the Training of Logic Models of Protein Signaling Networks
with {ASP}},
booktitle = {Computational Methods in Systems Biology - 10th International Conference,
{CMSB} 2012, London, UK, October 3-5, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7605},
pages = {342--361},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33636-2\_20},
doi = {10.1007/978-3-642-33636-2\_20},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/VidelaGETGSS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/cmsb/2012,
editor = {David R. Gilbert and
Monika Heiner},
title = {Computational Methods in Systems Biology - 10th International Conference,
{CMSB} 2012, London, UK, October 3-5, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7605},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33636-2},
doi = {10.1007/978-3-642-33636-2},
isbn = {978-3-642-33635-5},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/2012.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/AngiusH11,
author = {Alessio Angius and
Andr{\'{a}}s Horv{\'{a}}th},
editor = {Fran{\c{c}}ois Fages},
title = {Analysis of stochastic reaction networks with Markov reward models},
booktitle = {Computational Methods in Systems Biology, 9th International Conference,
{CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings},
pages = {45--54},
publisher = {{ACM}},
year = {2011},
url = {https://doi.org/10.1145/2037509.2037517},
doi = {10.1145/2037509.2037517},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/AngiusH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BartocciCGGSF11,
author = {Ezio Bartocci and
Elizabeth Cherry and
James Glimm and
Radu Grosu and
Scott A. Smolka and
Flavio H. Fenton},
editor = {Fran{\c{c}}ois Fages},
title = {Toward real-time simulation of cardiac dynamics},
booktitle = {Computational Methods in Systems Biology, 9th International Conference,
{CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings},
pages = {103--112},
publisher = {{ACM}},
year = {2011},
url = {https://doi.org/10.1145/2037509.2037525},
doi = {10.1145/2037509.2037525},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/BartocciCGGSF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BittigHMU11,
author = {Arne T. Bittig and
Fiete Haack and
Carsten Maus and
Adelinde M. Uhrmacher},
editor = {Fran{\c{c}}ois Fages},
title = {Adapting rule-based model descriptions for simulating in continuous
and hybrid space},
booktitle = {Computational Methods in Systems Biology, 9th International Conference,
{CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings},
pages = {161--170},
publisher = {{ACM}},
year = {2011},
url = {https://doi.org/10.1145/2037509.2037533},
doi = {10.1145/2037509.2037533},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/BittigHMU11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BurkittWRF11,
author = {Mark Burkitt and
Dawn C. Walker and
Daniela M. Romano and
Alireza Fazeli},
editor = {Fran{\c{c}}ois Fages},
title = {Modelling sperm behaviour in a 3D environment},
booktitle = {Computational Methods in Systems Biology, 9th International Conference,
{CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings},
pages = {141--149},
publisher = {{ACM}},
year = {2011},
url = {https://doi.org/10.1145/2037509.2037531},
doi = {10.1145/2037509.2037531},
timestamp = {Mon, 16 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/BurkittWRF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/CardelliL11,
author = {Luca Cardelli and
Cosimo Laneve},
editor = {Fran{\c{c}}ois Fages},
title = {Reversible structures},
booktitle = {Computational Methods in Systems Biology, 9th International Conference,
{CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings},
pages = {131--140},
publisher = {{ACM}},
year = {2011},
url = {https://doi.org/10.1145/2037509.2037529},
doi = {10.1145/2037509.2037529},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/CardelliL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/CzeizlerRP11,
author = {Eugen Czeizler and
Vladimir Rogojin and
Ion Petre},
editor = {Fran{\c{c}}ois Fages},
title = {The phosphorylation of the heat shock factor as a modulator for the
heat shock response},
booktitle = {Computational Methods in Systems Biology, 9th International Conference,
{CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings},
pages = {9--23},
publisher = {{ACM}},
year = {2011},
url = {https://doi.org/10.1145/2037509.2037513},
doi = {10.1145/2037509.2037513},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/CzeizlerRP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/DarribaTDP11,
author = {Diego Darriba and
Guillermo L. Taboada and
Ramon Doallo and
David Posada},
editor = {Fran{\c{c}}ois Fages},
title = {{HPC} selection of models of {DNA} substitution},
booktitle = {Computational Methods in Systems Biology, 9th International Conference,
{CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings},
pages = {65--72},
publisher = {{ACM}},
year = {2011},
url = {https://doi.org/10.1145/2037509.2037520},
doi = {10.1145/2037509.2037520},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/DarribaTDP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/DegasperiC11,
author = {Andrea Degasperi and
Muffy Calder},
editor = {Fran{\c{c}}ois Fages},
title = {Multi-scale modelling of biological systems in process algebra with
multi-way synchronisation},
booktitle = {Computational Methods in Systems Biology, 9th International Conference,
{CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings},
pages = {195--208},
publisher = {{ACM}},
year = {2011},
url = {https://doi.org/10.1145/2037509.2037537},
doi = {10.1145/2037509.2037537},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/DegasperiC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/DemongeotS11,
author = {Jacques Demongeot and
Sylvain Sen{\'{e}}},
editor = {Fran{\c{c}}ois Fages},
title = {The singular power of the environment on stochastic nonlinear threshold
Boolean automata networks},
booktitle = {Computational Methods in Systems Biology, 9th International Conference,
{CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings},
pages = {55--64},
publisher = {{ACM}},
year = {2011},
url = {https://doi.org/10.1145/2037509.2037518},
doi = {10.1145/2037509.2037518},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/DemongeotS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/FalkOEKK11,
author = {Martin Falk and
Michael Ott and
Thomas Ertl and
Michael Klann and
Heinz Koeppl},
editor = {Fran{\c{c}}ois Fages},
title = {Parallelized agent-based simulation on {CPU} and graphics hardware
for spatial and stochastic models in biology},
booktitle = {Computational Methods in Systems Biology, 9th International Conference,
{CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings},
pages = {73--82},
publisher = {{ACM}},
year = {2011},
url = {https://doi.org/10.1145/2037509.2037521},
doi = {10.1145/2037509.2037521},
timestamp = {Thu, 08 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/FalkOEKK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/GaoLGHT11,
author = {Qian Gao and
Fei Liu and
David R. Gilbert and
Monika Heiner and
David Tree},
editor = {Fran{\c{c}}ois Fages},
title = {A multiscale approach to modelling planar cell polarity in Drosophila
wing using hierarchically coloured Petri nets},
booktitle = {Computational Methods in Systems Biology, 9th International Conference,
{CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings},
pages = {209--218},
publisher = {{ACM}},
year = {2011},
url = {https://doi.org/10.1145/2037509.2037538},
doi = {10.1145/2037509.2037538},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/GaoLGHT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/GaoTT11,
author = {Xuefeng Gao and
Sabin Tabirca and
Mark Tangney},
editor = {Fran{\c{c}}ois Fages},
title = {Computer simulation of Salmonella typhimurium accumulation within
tumors},
booktitle = {Computational Methods in Systems Biology, 9th International Conference,
{CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings},
pages = {113--119},
publisher = {{ACM}},
year = {2011},
url = {https://doi.org/10.1145/2037509.2037526},
doi = {10.1145/2037509.2037526},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/GaoTT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/HenzingerM11,
author = {Thomas A. Henzinger and
Maria Mateescu},
editor = {Fran{\c{c}}ois Fages},
title = {Propagation models for computing biochemical reaction networks},
booktitle = {Computational Methods in Systems Biology, 9th International Conference,
{CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings},
pages = {1--3},
publisher = {{ACM}},
year = {2011},
url = {https://doi.org/10.1145/2037509.2037510},
doi = {10.1145/2037509.2037510},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/HenzingerM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/KlarnerSB11,
author = {Hannes Klarner and
Heike Siebert and
Alexander Bockmayr},
editor = {Fran{\c{c}}ois Fages},
title = {Parameter inference for asynchronous logical networks using discrete
time series},
booktitle = {Computational Methods in Systems Biology, 9th International Conference,
{CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings},
pages = {121--130},
publisher = {{ACM}},
year = {2011},
url = {https://doi.org/10.1145/2037509.2037528},
doi = {10.1145/2037509.2037528},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/KlarnerSB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/KuwaharaG11,
author = {Hiroyuki Kuwahara and
Xin Gao},
editor = {Fran{\c{c}}ois Fages},
title = {An efficient parallel stochastic simulation method for analysis of
nonviral gene delivery systems},
booktitle = {Computational Methods in Systems Biology, 9th International Conference,
{CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings},
pages = {83--93},
publisher = {{ACM}},
year = {2011},
url = {https://doi.org/10.1145/2037509.2037522},
doi = {10.1145/2037509.2037522},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/KuwaharaG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/MendesSS11,
author = {Pedro Mendes and
Natalie J. Stanford and
Kieran Smallbone},
editor = {Fran{\c{c}}ois Fages},
title = {Kinetic modelling of large-scale metabolic networks},
booktitle = {Computational Methods in Systems Biology, 9th International Conference,
{CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings},
pages = {5--6},
publisher = {{ACM}},
year = {2011},
url = {https://doi.org/10.1145/2037509.2037511},
doi = {10.1145/2037509.2037511},
timestamp = {Tue, 05 Nov 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/MendesSS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/MurthyBFGGSG11,
author = {Abhishek Murthy and
Ezio Bartocci and
Flavio H. Fenton and
James Glimm and
Richard A. Gray and
Scott A. Smolka and
Radu Grosu},
editor = {Fran{\c{c}}ois Fages},
title = {Curvature analysis of cardiac excitation wavefronts},
booktitle = {Computational Methods in Systems Biology, 9th International Conference,
{CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings},
pages = {151--160},
publisher = {{ACM}},
year = {2011},
url = {https://doi.org/10.1145/2037509.2037532},
doi = {10.1145/2037509.2037532},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/MurthyBFGGSG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/OmonyMGSB11,
author = {Jimmy Omony and
Astrid R. Mach{-}Aigner and
Leo H. de Graaff and
Gerrit van Straten and
Anton J. B. van Boxtel},
editor = {Fran{\c{c}}ois Fages},
title = {Evaluation of design strategies for time course experiments in genetic
networks: the XlnR regulon in \emph{Aspergillus niger}},
booktitle = {Computational Methods in Systems Biology, 9th International Conference,
{CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings},
pages = {25--33},
publisher = {{ACM}},
year = {2011},
url = {https://doi.org/10.1145/2037509.2037514},
doi = {10.1145/2037509.2037514},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/OmonyMGSB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/OuryP11,
author = {Nicolas Oury and
Gordon D. Plotkin},
editor = {Fran{\c{c}}ois Fages},
title = {Coloured stochastic multilevel multiset rewriting},
booktitle = {Computational Methods in Systems Biology, 9th International Conference,
{CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings},
pages = {171--181},
publisher = {{ACM}},
year = {2011},
url = {https://doi.org/10.1145/2037509.2037534},
doi = {10.1145/2037509.2037534},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/OuryP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/PalaniappanAGT11,
author = {Sucheendra K. Palaniappan and
S. Akshay and
Blaise Genest and
P. S. Thiagarajan},
editor = {Fran{\c{c}}ois Fages},
title = {A hybrid factored frontier algorithm for dynamic Bayesian network
models of biopathways},
booktitle = {Computational Methods in Systems Biology, 9th International Conference,
{CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings},
pages = {35--44},
publisher = {{ACM}},
year = {2011},
url = {https://doi.org/10.1145/2037509.2037516},
doi = {10.1145/2037509.2037516},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/PalaniappanAGT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/PaolettiLMV11,
author = {Nicola Paoletti and
Pietro Li{\`{o}} and
Emanuela Merelli and
Marco Viceconti},
editor = {Fran{\c{c}}ois Fages},
title = {Osteoporosis: a multiscale modeling viewpoint},
booktitle = {Computational Methods in Systems Biology, 9th International Conference,
{CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings},
pages = {183--193},
publisher = {{ACM}},
year = {2011},
url = {https://doi.org/10.1145/2037509.2037536},
doi = {10.1145/2037509.2037536},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/PaolettiLMV11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Sanchez-LinaresSGCG11,
author = {Irene S{\'{a}}nchez{-}Linares and
Horacio Emilio P{\'{e}}rez S{\'{a}}nchez and
Gin{\'{e}}s D. Guerrero and
Jos{\'{e}} M. Cecilia and
Jos{\'{e}} M. Garc{\'{\i}}a},
editor = {Fran{\c{c}}ois Fages},
title = {Accelerating multiple target drug screening on GPUs},
booktitle = {Computational Methods in Systems Biology, 9th International Conference,
{CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings},
pages = {95--102},
publisher = {{ACM}},
year = {2011},
url = {https://doi.org/10.1145/2037509.2037523},
doi = {10.1145/2037509.2037523},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/Sanchez-LinaresSGCG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Thieffry11,
author = {Denis Thieffry},
editor = {Fran{\c{c}}ois Fages},
title = {Logical modelling of haematopoietic cell fate reprogramming},
booktitle = {Computational Methods in Systems Biology, 9th International Conference,
{CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings},
pages = {7},
publisher = {{ACM}},
year = {2011},
url = {https://doi.org/10.1145/2037509.2037512},
doi = {10.1145/2037509.2037512},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/Thieffry11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/cmsb/2011,
editor = {Fran{\c{c}}ois Fages},
title = {Computational Methods in Systems Biology, 9th International Conference,
{CMSB} 2011, Paris, France, September 21-23, 2011. Proceedings},
publisher = {{ACM}},
year = {2011},
isbn = {978-1-4503-0817-5},
timestamp = {Sun, 04 Dec 2011 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/2011.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/CalderADD10,
author = {Muffy Calder and
Oana Andrei and
Andrea Degasperi and
Robin Donaldson},
editor = {Paola Quaglia},
title = {From species to pathway and tissue as process},
booktitle = {Computational Methods in Systems Biology, 8th International Conference,
{CMSB} 2010, Trento, Italy, September 29 - October 1, 2010. Proceedings},
pages = {1--2},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1839764.1839765},
doi = {10.1145/1839764.1839765},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/CalderADD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/ClarkGGK10,
author = {Allan Clark and
Stephen Gilmore and
Maria Luisa Guerriero and
Peter Kemper},
editor = {Paola Quaglia},
title = {On verifying Bio-PEPA models},
booktitle = {Computational Methods in Systems Biology, 8th International Conference,
{CMSB} 2010, Trento, Italy, September 29 - October 1, 2010. Proceedings},
pages = {23--32},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1839764.1839769},
doi = {10.1145/1839764.1839769},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/ClarkGGK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/DelaplaceKC10,
author = {Franck Delaplace and
Hanna Klaudel and
Amandine Cartier{-}Michaud},
editor = {Paola Quaglia},
title = {Discrete causal model view of biological networks},
booktitle = {Computational Methods in Systems Biology, 8th International Conference,
{CMSB} 2010, Trento, Italy, September 29 - October 1, 2010. Proceedings},
pages = {4--13},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1839764.1839767},
doi = {10.1145/1839764.1839767},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/DelaplaceKC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/DonaldsonTKC10,
author = {Robin Donaldson and
Carolyn L. Talcott and
Merrill Knapp and
Muffy Calder},
editor = {Paola Quaglia},
title = {Understanding signalling networks as collections of signal transduction
pathways},
booktitle = {Computational Methods in Systems Biology, 8th International Conference,
{CMSB} 2010, Trento, Italy, September 29 - October 1, 2010. Proceedings},
pages = {86--95},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1839764.1839775},
doi = {10.1145/1839764.1839775},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/DonaldsonTKC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/HeinerRSS10,
author = {Monika Heiner and
Christian Rohr and
Martin Schwarick and
Stefan Streif},
editor = {Paola Quaglia},
title = {A comparative study of stochastic analysis techniques},
booktitle = {Computational Methods in Systems Biology, 8th International Conference,
{CMSB} 2010, Trento, Italy, September 29 - October 1, 2010. Proceedings},
pages = {96--106},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1839764.1839776},
doi = {10.1145/1839764.1839776},
timestamp = {Wed, 25 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/HeinerRSS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/HenzingerMMW10,
author = {Thomas A. Henzinger and
Linar Mikeev and
Maria Mateescu and
Verena Wolf},
editor = {Paola Quaglia},
title = {Hybrid numerical solution of the chemical master equation},
booktitle = {Computational Methods in Systems Biology, 8th International Conference,
{CMSB} 2010, Trento, Italy, September 29 - October 1, 2010. Proceedings},
pages = {55--65},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1839764.1839772},
doi = {10.1145/1839764.1839772},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/HenzingerMMW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/KattasGW10,
author = {Graciano Dieck Kattas and
Peter Gennemark and
Dag Wedelin},
editor = {Paola Quaglia},
title = {Structural identification of {GMA} models: algorithm and model comparison},
booktitle = {Computational Methods in Systems Biology, 8th International Conference,
{CMSB} 2010, Trento, Italy, September 29 - October 1, 2010. Proceedings},
pages = {107--113},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1839764.1839777},
doi = {10.1145/1839764.1839777},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/KattasGW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/KrauseKV10,
author = {Christian Krause and
Carola Krause and
Erik P. de Vink},
editor = {Paola Quaglia},
title = {Action-based analysis of discrete regulatory networks with short-term
stimuli},
booktitle = {Computational Methods in Systems Biology, 8th International Conference,
{CMSB} 2010, Trento, Italy, September 29 - October 1, 2010. Proceedings},
pages = {66--75},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1839764.1839773},
doi = {10.1145/1839764.1839773},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/KrauseKV10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Mansy10,
author = {Sheref S. Mansy},
editor = {Paola Quaglia},
title = {Building cell-like structures from the bottom-up},
booktitle = {Computational Methods in Systems Biology, 8th International Conference,
{CMSB} 2010, Trento, Italy, September 29 - October 1, 2010. Proceedings},
pages = {3},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1839764.1839766},
doi = {10.1145/1839764.1839766},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/Mansy10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/NabliS10,
author = {Faten Nabli and
Sylvain Soliman},
editor = {Paola Quaglia},
title = {Steady-state solution of biochemical systems, beyond S-systems via
T-invariants},
booktitle = {Computational Methods in Systems Biology, 8th International Conference,
{CMSB} 2010, Trento, Italy, September 29 - October 1, 2010. Proceedings},
pages = {14--22},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1839764.1839768},
doi = {10.1145/1839764.1839768},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/NabliS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/PauleveYLP10,
author = {Lo{\"{\i}}c Paulev{\'{e}} and
Simon Youssef and
Matthew R. Lakin and
Andrew Phillips},
editor = {Paola Quaglia},
title = {A generic abstract machine for stochastic process calculi},
booktitle = {Computational Methods in Systems Biology, 8th International Conference,
{CMSB} 2010, Trento, Italy, September 29 - October 1, 2010. Proceedings},
pages = {43--54},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1839764.1839771},
doi = {10.1145/1839764.1839771},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/PauleveYLP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/TwardziokSH10,
author = {Sven Twardziok and
Heike Siebert and
Alexander Heyl},
editor = {Paola Quaglia},
title = {Stochasticity in reactions: a probabilistic Boolean modeling approach},
booktitle = {Computational Methods in Systems Biology, 8th International Conference,
{CMSB} 2010, Trento, Italy, September 29 - October 1, 2010. Proceedings},
pages = {76--85},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1839764.1839774},
doi = {10.1145/1839764.1839774},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/TwardziokSH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/WuGG10,
author = {Zujian Wu and
Qian Gao and
David R. Gilbert},
editor = {Paola Quaglia},
title = {Target driven biochemical network reconstruction based on petri nets
and simulated annealing},
booktitle = {Computational Methods in Systems Biology, 8th International Conference,
{CMSB} 2010, Trento, Italy, September 29 - October 1, 2010. Proceedings},
pages = {33--42},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1839764.1839770},
doi = {10.1145/1839764.1839770},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/WuGG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/cmsb/2010,
editor = {Paola Quaglia},
title = {Computational Methods in Systems Biology, 8th International Conference,
{CMSB} 2010, Trento, Italy, September 29 - October 1, 2010. Proceedings},
publisher = {{ACM}},
year = {2010},
url = {http://portal.acm.org/citation.cfm?id=1839764},
isbn = {978-1-4503-0068-1},
timestamp = {Fri, 06 Jan 2012 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/2010.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/AkmanCDG09,
author = {Ozgur E. Akman and
Federica Ciocchetta and
Andrea Degasperi and
Maria Luisa Guerriero},
editor = {Pierpaolo Degano and
Roberto Gorrieri},
title = {Modelling Biological Clocks with Bio-PEPA: Stochasticity and Robustness
for the \emph{Neurospora crassa} Circadian Network},
booktitle = {Computational Methods in Systems Biology, 7th International Conference,
{CMSB} 2009, Bologna, Italy, August 31-September 1, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5688},
pages = {52--67},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-03845-7\_4},
doi = {10.1007/978-3-642-03845-7\_4},
timestamp = {Tue, 14 May 2019 10:00:49 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/AkmanCDG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BaggiBF09,
author = {Michele Baggi and
Demis Ballis and
Moreno Falaschi},
editor = {Pierpaolo Degano and
Roberto Gorrieri},
title = {Quantitative Pathway Logic for Computational Biology},
booktitle = {Computational Methods in Systems Biology, 7th International Conference,
{CMSB} 2009, Bologna, Italy, August 31-September 1, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5688},
pages = {68--82},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-03845-7\_5},
doi = {10.1007/978-3-642-03845-7\_5},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/BaggiBF09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Bailly-BechetBZ09,
author = {Marc Bailly{-}Bechet and
Alfredo Braunstein and
Riccardo Zecchina},
editor = {Pierpaolo Degano and
Roberto Gorrieri},
title = {A Prize-Collecting Steiner Tree Approach for Transduction Network
Inference},
booktitle = {Computational Methods in Systems Biology, 7th International Conference,
{CMSB} 2009, Bologna, Italy, August 31-September 1, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5688},
pages = {83--95},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-03845-7\_6},
doi = {10.1007/978-3-642-03845-7\_6},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/Bailly-BechetBZ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BartoliMRFC09,
author = {Lisa Bartoli and
Pier Luigi Martelli and
Ivan Rossi and
Piero Fariselli and
Rita Casadio},
editor = {Pierpaolo Degano and
Roberto Gorrieri},
title = {Prediction of Protein-Protein Interacting Sites: How to Bridge Molecular
Events to Large Scale Protein Interaction Networks},
booktitle = {Computational Methods in Systems Biology, 7th International Conference,
{CMSB} 2009, Bologna, Italy, August 31-September 1, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5688},
pages = {1--17},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-03845-7\_1},
doi = {10.1007/978-3-642-03845-7\_1},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/BartoliMRFC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BellaL09,
author = {Giampaolo Bella and
Pietro Li{\`{o}}},
editor = {Pierpaolo Degano and
Roberto Gorrieri},
title = {Formal Analysis of the Genetic Toggle},
booktitle = {Computational Methods in Systems Biology, 7th International Conference,
{CMSB} 2009, Bologna, Italy, August 31-September 1, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5688},
pages = {96--110},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-03845-7\_7},
doi = {10.1007/978-3-642-03845-7\_7},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/BellaL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/CzeizlerCBP09,
author = {Elena Czeizler and
Eugen Czeizler and
Ralph{-}Johan Back and
Ion Petre},
editor = {Pierpaolo Degano and
Roberto Gorrieri},
title = {Control Strategies for the Regulation of the Eukaryotic Heat Shock
Response},
booktitle = {Computational Methods in Systems Biology, 7th International Conference,
{CMSB} 2009, Bologna, Italy, August 31-September 1, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5688},
pages = {111--125},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-03845-7\_8},
doi = {10.1007/978-3-642-03845-7\_8},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/CzeizlerCBP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/DangGM09,
author = {Thao Dang and
Colas Le Guernic and
Oded Maler},
editor = {Pierpaolo Degano and
Roberto Gorrieri},
title = {Computing Reachable States for Nonlinear Biological Models},
booktitle = {Computational Methods in Systems Biology, 7th International Conference,
{CMSB} 2009, Bologna, Italy, August 31-September 1, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5688},
pages = {126--141},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-03845-7\_9},
doi = {10.1007/978-3-642-03845-7\_9},
timestamp = {Tue, 03 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/DangGM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/DelzannoGGLZ09,
author = {Giorgio Delzanno and
Cinzia Di Giusto and
Maurizio Gabbrielli and
Cosimo Laneve and
Gianluigi Zavattaro},
editor = {Pierpaolo Degano and
Roberto Gorrieri},
title = {The \emph{kappa}-Lattice: Decidability Boundaries for Qualitative
Analysis in Biological Languages},
booktitle = {Computational Methods in Systems Biology, 7th International Conference,
{CMSB} 2009, Bologna, Italy, August 31-September 1, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5688},
pages = {158--172},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-03845-7\_11},
doi = {10.1007/978-3-642-03845-7\_11},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/DelzannoGGLZ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/DidierHMW09,
author = {Fr{\'{e}}d{\'{e}}ric Didier and
Thomas A. Henzinger and
Maria Mateescu and
Verena Wolf},
editor = {Pierpaolo Degano and
Roberto Gorrieri},
title = {Approximation of Event Probabilities in Noisy Cellular Processes},
booktitle = {Computational Methods in Systems Biology, 7th International Conference,
{CMSB} 2009, Bologna, Italy, August 31-September 1, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5688},
pages = {173--188},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-03845-7\_12},
doi = {10.1007/978-3-642-03845-7\_12},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/DidierHMW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/GalpinH09,
author = {Vashti Galpin and
Jane Hillston},
editor = {Pierpaolo Degano and
Roberto Gorrieri},
title = {Equivalence and Discretisation in Bio-PEPA},
booktitle = {Computational Methods in Systems Biology, 7th International Conference,
{CMSB} 2009, Bologna, Italy, August 31-September 1, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5688},
pages = {189--204},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-03845-7\_13},
doi = {10.1007/978-3-642-03845-7\_13},
timestamp = {Fri, 02 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/GalpinH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/GennemarkW09,
author = {Peter Gennemark and
Dag Wedelin},
editor = {Pierpaolo Degano and
Roberto Gorrieri},
title = {Improved Parameter Estimation for Completely Observed Ordinary Differential
Equations with Application to Biological Systems},
booktitle = {Computational Methods in Systems Biology, 7th International Conference,
{CMSB} 2009, Bologna, Italy, August 31-September 1, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5688},
pages = {205--217},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-03845-7\_14},
doi = {10.1007/978-3-642-03845-7\_14},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/GennemarkW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Heath09,
author = {John K. Heath},
editor = {Pierpaolo Degano and
Roberto Gorrieri},
title = {The Equivalence between Biology and Computation},
booktitle = {Computational Methods in Systems Biology, 7th International Conference,
{CMSB} 2009, Bologna, Italy, August 31-September 1, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5688},
pages = {18--25},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-03845-7\_2},
doi = {10.1007/978-3-642-03845-7\_2},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/Heath09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/JhaCLLPZ09,
author = {Sumit Kumar Jha and
Edmund M. Clarke and
Christopher James Langmead and
Axel Legay and
Andr{\'{e}} Platzer and
Paolo Zuliani},
editor = {Pierpaolo Degano and
Roberto Gorrieri},
title = {A Bayesian Approach to Model Checking Biological Systems},
booktitle = {Computational Methods in Systems Biology, 7th International Conference,
{CMSB} 2009, Bologna, Italy, August 31-September 1, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5688},
pages = {218--234},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-03845-7\_15},
doi = {10.1007/978-3-642-03845-7\_15},
timestamp = {Wed, 19 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/JhaCLLPZ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/JohnLN09,
author = {Mathias John and
C{\'{e}}dric Lhoussaine and
Joachim Niehren},
editor = {Pierpaolo Degano and
Roberto Gorrieri},
title = {Dynamic Compartments in the Imperative \emph{pi}-Calculus},
booktitle = {Computational Methods in Systems Biology, 7th International Conference,
{CMSB} 2009, Bologna, Italy, August 31-September 1, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5688},
pages = {235--250},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-03845-7\_16},
doi = {10.1007/978-3-642-03845-7\_16},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/JohnLN09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/LiuTH09,
author = {Bing Liu and
P. S. Thiagarajan and
David Hsu},
editor = {Pierpaolo Degano and
Roberto Gorrieri},
title = {Probabilistic Approximations of Signaling Pathway Dynamics},
booktitle = {Computational Methods in Systems Biology, 7th International Conference,
{CMSB} 2009, Bologna, Italy, August 31-September 1, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5688},
pages = {251--265},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-03845-7\_17},
doi = {10.1007/978-3-642-03845-7\_17},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/LiuTH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/MariaFS09,
author = {Elisabetta De Maria and
Fran{\c{c}}ois Fages and
Sylvain Soliman},
editor = {Pierpaolo Degano and
Roberto Gorrieri},
title = {On Coupling Models Using Model-Checking: Effects of Irinotecan Injections
on the Mammalian Cell Cycle},
booktitle = {Computational Methods in Systems Biology, 7th International Conference,
{CMSB} 2009, Bologna, Italy, August 31-September 1, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5688},
pages = {142--157},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-03845-7\_10},
doi = {10.1007/978-3-642-03845-7\_10},
timestamp = {Fri, 02 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/MariaFS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/NaldiRTC09,
author = {Aur{\'{e}}lien Naldi and
Elisabeth Remy and
Denis Thieffry and
Claudine Chaouiya},
editor = {Pierpaolo Degano and
Roberto Gorrieri},
title = {A Reduction of Logical Regulatory Graphs Preserving Essential Dynamical
Properties},
booktitle = {Computational Methods in Systems Biology, 7th International Conference,
{CMSB} 2009, Bologna, Italy, August 31-September 1, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5688},
pages = {266--280},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-03845-7\_18},
doi = {10.1007/978-3-642-03845-7\_18},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/NaldiRTC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/NapioneMCHPPPSVBB09,
author = {Lucia Napione and
Daniele Manini and
Francesca Cordero and
Andr{\'{a}}s Horv{\'{a}}th and
Andrea Picco and
Massimiliano De Pierro and
Simona Pavan and
Matteo Sereno and
Andrea Veglio and
Federico Bussolino and
Gianfranco Balbo},
editor = {Pierpaolo Degano and
Roberto Gorrieri},
title = {On the Use of Stochastic Petri Nets in the Analysis of Signal Transduction
Pathways for Angiogenesis Process},
booktitle = {Computational Methods in Systems Biology, 7th International Conference,
{CMSB} 2009, Bologna, Italy, August 31-September 1, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5688},
pages = {281--295},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-03845-7\_19},
doi = {10.1007/978-3-642-03845-7\_19},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/NapioneMCHPPPSVBB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/PriamiBQ09,
author = {Corrado Priami and
Paolo Ballarini and
Paola Quaglia},
editor = {Pierpaolo Degano and
Roberto Gorrieri},
title = {BlenX4Bio - BlenX for Biologists},
booktitle = {Computational Methods in Systems Biology, 7th International Conference,
{CMSB} 2009, Bologna, Italy, August 31-September 1, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5688},
pages = {26--51},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-03845-7\_3},
doi = {10.1007/978-3-642-03845-7\_3},
timestamp = {Fri, 02 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/PriamiBQ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/SchwarickH09,
author = {Martin Schwarick and
Monika Heiner},
editor = {Pierpaolo Degano and
Roberto Gorrieri},
title = {{CSL} Model Checking of Biochemical Networks with Interval Decision
Diagrams},
booktitle = {Computational Methods in Systems Biology, 7th International Conference,
{CMSB} 2009, Bologna, Italy, August 31-September 1, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5688},
pages = {296--312},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-03845-7\_20},
doi = {10.1007/978-3-642-03845-7\_20},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/SchwarickH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/SoueidanSN09,
author = {Hayssam Soueidan and
Gr{\'{e}}goire Sutre and
Macha Nikolski},
editor = {Pierpaolo Degano and
Roberto Gorrieri},
title = {Qualitative Transition Systems for the Abstraction and Comparison
of Transient Behavior in Parametrized Dynamic Models},
booktitle = {Computational Methods in Systems Biology, 7th International Conference,
{CMSB} 2009, Bologna, Italy, August 31-September 1, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5688},
pages = {313--327},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-03845-7\_21},
doi = {10.1007/978-3-642-03845-7\_21},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/SoueidanSN09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/cmsb/2009,
editor = {Pierpaolo Degano and
Roberto Gorrieri},
title = {Computational Methods in Systems Biology, 7th International Conference,
{CMSB} 2009, Bologna, Italy, August 31-September 1, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5688},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-03845-7},
doi = {10.1007/978-3-642-03845-7},
isbn = {978-3-642-03844-0},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/2009.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BosnackiESV08,
author = {Dragan Bosnacki and
Huub M. M. ten Eikelder and
Marvin N. Steijaert and
Erik P. de Vink},
editor = {Monika Heiner and
Adelinde M. Uhrmacher},
title = {Stochastic Analysis of Amino Acid Substitution in Protein Synthesis},
booktitle = {Computational Methods in Systems Biology, 6th International Conference,
{CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5307},
pages = {367--386},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-88562-7\_25},
doi = {10.1007/978-3-540-88562-7\_25},
timestamp = {Tue, 14 May 2019 10:00:49 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/BosnackiESV08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/ClarkeFLHJL08,
author = {Edmund M. Clarke and
James R. Faeder and
Christopher James Langmead and
Leonard A. Harris and
Sumit Kumar Jha and
Axel Legay},
editor = {Monika Heiner and
Adelinde M. Uhrmacher},
title = {Statistical Model Checking in BioLab: Applications to the Automated
Analysis of T-Cell Receptor Signaling Pathway},
booktitle = {Computational Methods in Systems Biology, 6th International Conference,
{CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5307},
pages = {231--250},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-88562-7\_18},
doi = {10.1007/978-3-540-88562-7\_18},
timestamp = {Wed, 19 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/ClarkeFLHJL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/DematteM08,
author = {Lorenzo Dematt{\'{e}} and
Tommaso Mazza},
editor = {Monika Heiner and
Adelinde M. Uhrmacher},
title = {On Parallel Stochastic Simulation of Diffusive Systems},
booktitle = {Computational Methods in Systems Biology, 6th International Conference,
{CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5307},
pages = {191--210},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-88562-7\_16},
doi = {10.1007/978-3-540-88562-7\_16},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/DematteM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/DonaldsonG08,
author = {Robin Donaldson and
David R. Gilbert},
editor = {Monika Heiner and
Adelinde M. Uhrmacher},
title = {A Model Checking Approach to the Parameter Estimation of Biochemical
Pathways},
booktitle = {Computational Methods in Systems Biology, 6th International Conference,
{CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5307},
pages = {269--287},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-88562-7\_20},
doi = {10.1007/978-3-540-88562-7\_20},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/DonaldsonG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/DurzinskyWW08,
author = {Markus Durzinsky and
Annegret Wagler and
Robert Weismantel},
editor = {Monika Heiner and
Adelinde M. Uhrmacher},
title = {A Combinatorial Approach to Reconstruct Petri Nets from Experimental
Data},
booktitle = {Computational Methods in Systems Biology, 6th International Conference,
{CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5307},
pages = {328--346},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-88562-7\_23},
doi = {10.1007/978-3-540-88562-7\_23},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/DurzinskyWW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/HillstonCDG08,
author = {Jane Hillston and
Federica Ciocchetta and
Adam Duguid and
Stephen Gilmore},
editor = {Monika Heiner and
Adelinde M. Uhrmacher},
title = {Integrated Analysis from Abstract Stochastic Process Algebra Models},
booktitle = {Computational Methods in Systems Biology, 6th International Conference,
{CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5307},
pages = {2--4},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-88562-7\_2},
doi = {10.1007/978-3-540-88562-7\_2},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/HillstonCDG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/JeschkeE08,
author = {Matthias Jeschke and
Roland Ewald},
editor = {Monika Heiner and
Adelinde M. Uhrmacher},
title = {Large-Scale Design Space Exploration of {SSA}},
booktitle = {Computational Methods in Systems Biology, 6th International Conference,
{CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5307},
pages = {211--230},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-88562-7\_17},
doi = {10.1007/978-3-540-88562-7\_17},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/JeschkeE08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/JohnLNU08,
author = {Mathias John and
C{\'{e}}dric Lhoussaine and
Joachim Niehren and
Adelinde M. Uhrmacher},
editor = {Monika Heiner and
Adelinde M. Uhrmacher},
title = {The Attributed Pi Calculus},
booktitle = {Computational Methods in Systems Biology, 6th International Conference,
{CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5307},
pages = {83--102},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-88562-7\_10},
doi = {10.1007/978-3-540-88562-7\_10},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/JohnLNU08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Jong08,
author = {Hidde de Jong},
editor = {Monika Heiner and
Adelinde M. Uhrmacher},
title = {Qualitative Modeling and Simulation of Bacterial Regulatory Networks},
booktitle = {Computational Methods in Systems Biology, 6th International Conference,
{CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5307},
pages = {1},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-88562-7\_1},
doi = {10.1007/978-3-540-88562-7\_1},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/Jong08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/KohnN08,
author = {Dagmar K{\"{o}}hn and
Nicolas Le Nov{\`{e}}re},
editor = {Monika Heiner and
Adelinde M. Uhrmacher},
title = {{SED-ML} - An {XML} Format for the Implementation of the {MIASE} Guidelines},
booktitle = {Computational Methods in Systems Biology, 6th International Conference,
{CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5307},
pages = {176--190},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-88562-7\_15},
doi = {10.1007/978-3-540-88562-7\_15},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/KohnN08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/KrishnaG08,
author = {Ritesh Krishna and
Shuixia Guo},
editor = {Monika Heiner and
Adelinde M. Uhrmacher},
title = {A Partial Granger Causality Approach to Explore Causal Networks Derived
From Multi-parameter Data},
booktitle = {Computational Methods in Systems Biology, 6th International Conference,
{CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5307},
pages = {9--27},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-88562-7\_6},
doi = {10.1007/978-3-540-88562-7\_6},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/KrishnaG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/KwiatkowskiS08,
author = {Marek Kwiatkowski and
Ian Stark},
editor = {Monika Heiner and
Adelinde M. Uhrmacher},
title = {The Continuous pi-Calculus: {A} Process Algebra for Biochemical Modelling},
booktitle = {Computational Methods in Systems Biology, 6th International Conference,
{CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5307},
pages = {103--122},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-88562-7\_11},
doi = {10.1007/978-3-540-88562-7\_11},
timestamp = {Fri, 02 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/KwiatkowskiS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/LarhlimiB08,
author = {Abdelhalim Larhlimi and
Alexander Bockmayr},
editor = {Monika Heiner and
Adelinde M. Uhrmacher},
title = {On Inner and Outer Descriptions of the Steady-State Flux Cone of a
Metabolic Network},
booktitle = {Computational Methods in Systems Biology, 6th International Conference,
{CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5307},
pages = {308--327},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-88562-7\_22},
doi = {10.1007/978-3-540-88562-7\_22},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/LarhlimiB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/LebiedzSF08,
author = {Dirk Lebiedz and
Dominik Skanda and
Marc Fein},
editor = {Monika Heiner and
Adelinde M. Uhrmacher},
title = {Automatic Complexity Analysis and Model Reduction of Nonlinear Biochemical
Systems},
booktitle = {Computational Methods in Systems Biology, 6th International Conference,
{CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5307},
pages = {123--140},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-88562-7\_12},
doi = {10.1007/978-3-540-88562-7\_12},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/LebiedzSF08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/LoeweH08,
author = {Laurence Loewe and
Jane Hillston},
editor = {Monika Heiner and
Adelinde M. Uhrmacher},
title = {The Distribution of Mutational Effects on Fitness in a Simple Circadian
Clock},
booktitle = {Computational Methods in Systems Biology, 6th International Conference,
{CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5307},
pages = {156--175},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-88562-7\_14},
doi = {10.1007/978-3-540-88562-7\_14},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/LoeweH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Maus08,
author = {Carsten Maus},
editor = {Monika Heiner and
Adelinde M. Uhrmacher},
title = {Component-Based Modelling of {RNA} Structure Folding},
booktitle = {Computational Methods in Systems Biology, 6th International Conference,
{CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5307},
pages = {44--62},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-88562-7\_8},
doi = {10.1007/978-3-540-88562-7\_8},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/Maus08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Novere08,
author = {Nicolas Le Nov{\`{e}}re},
editor = {Monika Heiner and
Adelinde M. Uhrmacher},
title = {Multiscale Modelling of Neuronal Signalling},
booktitle = {Computational Methods in Systems Biology, 6th International Conference,
{CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5307},
pages = {7},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-88562-7\_4},
doi = {10.1007/978-3-540-88562-7\_4},
timestamp = {Tue, 26 Jun 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/Novere08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Oesterhelt08,
author = {Dieter Oesterhelt},
editor = {Monika Heiner and
Adelinde M. Uhrmacher},
title = {Systems Biology of Halophilic Archaea},
booktitle = {Computational Methods in Systems Biology, 6th International Conference,
{CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5307},
pages = {8},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-88562-7\_5},
doi = {10.1007/978-3-540-88562-7\_5},
timestamp = {Tue, 26 Jun 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/Oesterhelt08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Pedersen08,
author = {Michael Pedersen},
editor = {Monika Heiner and
Adelinde M. Uhrmacher},
title = {Compositional Definitions of Minimal Flows in Petri Nets},
booktitle = {Computational Methods in Systems Biology, 6th International Conference,
{CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5307},
pages = {288--307},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-88562-7\_21},
doi = {10.1007/978-3-540-88562-7\_21},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/Pedersen08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/PedersenP08,
author = {Michael Pedersen and
Gordon D. Plotkin},
editor = {Monika Heiner and
Adelinde M. Uhrmacher},
title = {A Language for Biochemical Systems},
booktitle = {Computational Methods in Systems Biology, 6th International Conference,
{CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5307},
pages = {63--82},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-88562-7\_9},
doi = {10.1007/978-3-540-88562-7\_9},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/PedersenP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/RizkBFS08,
author = {Aur{\'{e}}lien Rizk and
Gr{\'{e}}gory Batt and
Fran{\c{c}}ois Fages and
Sylvain Soliman},
editor = {Monika Heiner and
Adelinde M. Uhrmacher},
title = {On a Continuous Degree of Satisfaction of Temporal Logic Formulae
with Applications to Systems Biology},
booktitle = {Computational Methods in Systems Biology, 6th International Conference,
{CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5307},
pages = {251--268},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-88562-7\_19},
doi = {10.1007/978-3-540-88562-7\_19},
timestamp = {Fri, 02 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/RizkBFS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Takahashi08,
author = {Koichi Takahashi},
editor = {Monika Heiner and
Adelinde M. Uhrmacher},
title = {An Exact Brownian Dynamics Method for Cell Simulation},
booktitle = {Computational Methods in Systems Biology, 6th International Conference,
{CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5307},
pages = {5--6},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-88562-7\_3},
doi = {10.1007/978-3-540-88562-7\_3},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/Takahashi08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Takahashi08a,
author = {Ashish Tiwari and
Carolyn L. Talcott},
editor = {Monika Heiner and
Adelinde M. Uhrmacher},
title = {Analyzing a Discrete Model of Aplysia Central Pattern Generator},
booktitle = {Computational Methods in Systems Biology, 6th International Conference,
{CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5307},
pages = {347--366},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-88562-7\_24},
doi = {10.1007/978-3-540-88562-7\_24},
timestamp = {Wed, 06 Nov 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/Takahashi08a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/UllrichF08,
author = {Alexander Ullrich and
Christoph Flamm},
editor = {Monika Heiner and
Adelinde M. Uhrmacher},
title = {Functional Evolution of Ribozyme-Catalyzed Metabolisms in a Graph-Based
Toy-Universe},
booktitle = {Computational Methods in Systems Biology, 6th International Conference,
{CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5307},
pages = {28--43},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-88562-7\_7},
doi = {10.1007/978-3-540-88562-7\_7},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/UllrichF08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/WathL08,
author = {Richard Carl Van der Wath and
Pietro Li{\`{o}}},
editor = {Monika Heiner and
Adelinde M. Uhrmacher},
title = {A Stochastic Single Cell Based Model of BrdU Measured Hematopoietic
Stem Cell Kinetics},
booktitle = {Computational Methods in Systems Biology, 6th International Conference,
{CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5307},
pages = {387--401},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-88562-7\_26},
doi = {10.1007/978-3-540-88562-7\_26},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/WathL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/YeGSE08,
author = {Pei Ye and
Radu Grosu and
Scott A. Smolka and
Emilia Entcheva},
editor = {Monika Heiner and
Adelinde M. Uhrmacher},
title = {Formal Analysis of Abnormal Excitation in Cardiac Tissue},
booktitle = {Computational Methods in Systems Biology, 6th International Conference,
{CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5307},
pages = {141--155},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-88562-7\_13},
doi = {10.1007/978-3-540-88562-7\_13},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/YeGSE08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/cmsb/2008,
editor = {Monika Heiner and
Adelinde M. Uhrmacher},
title = {Computational Methods in Systems Biology, 6th International Conference,
{CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5307},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-88562-7},
doi = {10.1007/978-3-540-88562-7},
isbn = {978-3-540-88561-0},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/2008.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BraccialiBCD07,
author = {Andrea Bracciali and
Marcello Brunelli and
Enrico Cataldo and
Pierpaolo Degano},
editor = {Muffy Calder and
Stephen Gilmore},
title = {Expressive Models for Synaptic Plasticity},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2007, Edinburgh, Scotland, September 20-21, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4695},
pages = {152--167},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-75140-3\_11},
doi = {10.1007/978-3-540-75140-3\_11},
timestamp = {Tue, 14 May 2019 10:00:49 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/BraccialiBCD07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BrownRWSENCSL07,
author = {Martyn R. Brown and
Paul Rees and
Steve Wilks and
Huw D. Summers and
Rachel J. Errington and
Kerenza L. Njoh and
Sally C. Chappell and
Paul J. Smith and
James F. Leary},
editor = {Muffy Calder and
Stephen Gilmore},
title = {Computational Simulation of Optical Tracking of Cell Populations Using
Quantum Dot Fluorophores},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2007, Edinburgh, Scotland, September 20-21, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4695},
pages = {96--105},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-75140-3\_7},
doi = {10.1007/978-3-540-75140-3\_7},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/BrownRWSENCSL07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/CiocchettaHKT07,
author = {Federica Ciocchetta and
Jane Hillston and
Martin Kos and
David Tollervey},
editor = {Muffy Calder and
Stephen Gilmore},
title = {Modelling Yeast Pre-rRNA Processing},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2007, Edinburgh, Scotland, September 20-21, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4695},
pages = {32--47},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-75140-3\_3},
doi = {10.1007/978-3-540-75140-3\_3},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/CiocchettaHKT07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/CrediGLPSZ07,
author = {Alberto Credi and
Marco Garavelli and
Cosimo Laneve and
Sylvain Pradalier and
Serena Silvi and
Gianluigi Zavattaro},
editor = {Muffy Calder and
Stephen Gilmore},
title = {Modelization and Simulation of Nano Devices in {\textdollar}{\textbackslash}mathtt\{nano\}{\textbackslash}kappa{\textdollar}
Calculus},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2007, Edinburgh, Scotland, September 20-21, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4695},
pages = {168--183},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-75140-3\_12},
doi = {10.1007/978-3-540-75140-3\_12},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/CrediGLPSZ07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/DemattePRS07,
author = {Lorenzo Dematt{\'{e}} and
Corrado Priami and
Alessandro Romanel and
Orkun S. Soyer},
editor = {Muffy Calder and
Stephen Gilmore},
title = {A Formal and Integrated Framework to Simulate Evolution of Biological
Pathways},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2007, Edinburgh, Scotland, September 20-21, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4695},
pages = {106--120},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-75140-3\_8},
doi = {10.1007/978-3-540-75140-3\_8},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/DemattePRS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/FagesR07,
author = {Fran{\c{c}}ois Fages and
Aur{\'{e}}lien Rizk},
editor = {Muffy Calder and
Stephen Gilmore},
title = {On the Analysis of Numerical Data Time Series in Temporal Logic},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2007, Edinburgh, Scotland, September 20-21, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4695},
pages = {48--63},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-75140-3\_4},
doi = {10.1007/978-3-540-75140-3\_4},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/FagesR07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/FelixRV07,
author = {Liliana F{\'{e}}lix and
Francesc Rossell{\'{o}} and
Gabriel Valiente},
editor = {Muffy Calder and
Stephen Gilmore},
title = {Reconstructing Metabolic Pathways by Bidirectional Chemical Search},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2007, Edinburgh, Scotland, September 20-21, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4695},
pages = {217--232},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-75140-3\_15},
doi = {10.1007/978-3-540-75140-3\_15},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/FelixRV07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/GilbertHL07,
author = {David R. Gilbert and
Monika Heiner and
Sebastian Lehrack},
editor = {Muffy Calder and
Stephen Gilmore},
title = {A Unifying Framework for Modelling and Analysing Biochemical Pathways
Using Petri Nets},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2007, Edinburgh, Scotland, September 20-21, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4695},
pages = {200--216},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-75140-3\_14},
doi = {10.1007/978-3-540-75140-3\_14},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/GilbertHL07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/GuerrieroHP07,
author = {Maria Luisa Guerriero and
John K. Heath and
Corrado Priami},
editor = {Muffy Calder and
Stephen Gilmore},
title = {An Automated Translation from a Narrative Language for Biological
Modelling into Process Algebra},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2007, Edinburgh, Scotland, September 20-21, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4695},
pages = {136--151},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-75140-3\_10},
doi = {10.1007/978-3-540-75140-3\_10},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/GuerrieroHP07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/KhaninH07,
author = {Raya Khanin and
Desmond J. Higham},
editor = {Muffy Calder and
Stephen Gilmore},
title = {Chemical Master Equation and Langevin Regimes for a Gene Transcription
Model},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2007, Edinburgh, Scotland, September 20-21, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4695},
pages = {1--14},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-75140-3\_1},
doi = {10.1007/978-3-540-75140-3\_1},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/KhaninH07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/NaldiTC07,
author = {Aur{\'{e}}lien Naldi and
Denis Thieffry and
Claudine Chaouiya},
editor = {Muffy Calder and
Stephen Gilmore},
title = {Decision Diagrams for the Representation and Analysis of Logical Models
of Genetic Networks},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2007, Edinburgh, Scotland, September 20-21, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4695},
pages = {233--247},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-75140-3\_16},
doi = {10.1007/978-3-540-75140-3\_16},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/NaldiTC07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/PhillipsC07,
author = {Andrew Phillips and
Luca Cardelli},
editor = {Muffy Calder and
Stephen Gilmore},
title = {Efficient, Correct Simulation of Biological Processes in the Stochastic
Pi-calculus},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2007, Edinburgh, Scotland, September 20-21, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4695},
pages = {184--199},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-75140-3\_13},
doi = {10.1007/978-3-540-75140-3\_13},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/PhillipsC07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Sandmann07,
author = {Werner Sandmann},
editor = {Muffy Calder and
Stephen Gilmore},
title = {Simultaneous Stochastic Simulation of Multiple Perturbations in Biological
Network Models},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2007, Edinburgh, Scotland, September 20-21, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4695},
pages = {15--31},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-75140-3\_2},
doi = {10.1007/978-3-540-75140-3\_2},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/Sandmann07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/SiebertB07,
author = {Heike Siebert and
Alexander Bockmayr},
editor = {Muffy Calder and
Stephen Gilmore},
title = {Context Sensitivity in Logical Modeling with Time Delays},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2007, Edinburgh, Scotland, September 20-21, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4695},
pages = {64--79},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-75140-3\_5},
doi = {10.1007/978-3-540-75140-3\_5},
timestamp = {Fri, 02 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/SiebertB07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/VersariB07,
author = {Cristian Versari and
Nadia Busi},
editor = {Muffy Calder and
Stephen Gilmore},
title = {Stochastic Simulation of Biological Systems with Dynamical Compartment
Structure},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2007, Edinburgh, Scotland, September 20-21, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4695},
pages = {80--95},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-75140-3\_6},
doi = {10.1007/978-3-540-75140-3\_6},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/VersariB07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/WilczynskiT07,
author = {Bartek Wilczynski and
Jerzy Tiuryn},
editor = {Muffy Calder and
Stephen Gilmore},
title = {Reconstruction of Mammalian Cell Cycle Regulatory Network from Microarray
Data Using Stochastic Logical Networks},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2007, Edinburgh, Scotland, September 20-21, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4695},
pages = {121--135},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-75140-3\_9},
doi = {10.1007/978-3-540-75140-3\_9},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/WilczynskiT07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/cmsb/2007,
editor = {Muffy Calder and
Stephen Gilmore},
title = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2007, Edinburgh, Scotland, September 20-21, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4695},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-75140-3},
doi = {10.1007/978-3-540-75140-3},
isbn = {978-3-540-75139-7},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/2007.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BuschSW06,
author = {Hauke Busch and
Werner Sandmann and
Verena Wolf},
editor = {Corrado Priami},
title = {A Numerical Aggregation Algorithm for the Enzyme-Catalyzed Substrate
Conversion},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4210},
pages = {298--311},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11885191\_21},
doi = {10.1007/11885191\_21},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/BuschSW06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Busi06,
author = {Nadia Busi},
editor = {Corrado Priami},
title = {Deciding Behavioural Properties in Brane Calculi},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4210},
pages = {17--31},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11885191\_2},
doi = {10.1007/11885191\_2},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/Busi06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/CalderDGH06,
author = {Muffy Calder and
Adam Duguid and
Stephen Gilmore and
Jane Hillston},
editor = {Corrado Priami},
title = {Stronger Computational Modelling of Signalling Pathways Using Both
Continuous and Discrete-State Methods},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4210},
pages = {63--77},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11885191\_5},
doi = {10.1007/11885191\_5},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/CalderDGH06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/CataldoBB06,
author = {Enrico Cataldo and
John H. Byrne and
Douglas A. Baxter},
editor = {Corrado Priami},
title = {Computational Model of a Central Pattern Generator},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4210},
pages = {242--256},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11885191\_17},
doi = {10.1007/11885191\_17},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/CataldoBB06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/CavaliereS06,
author = {Matteo Cavaliere and
Sean Sedwards},
editor = {Corrado Priami},
title = {Modelling Cellular Processes Using Membrane Systems with Peripheral
and Integral Proteins},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4210},
pages = {108--126},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11885191\_8},
doi = {10.1007/11885191\_8},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/CavaliereS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/ChettaouiDLVV06,
author = {Chafika Chettaoui and
Franck Delaplace and
Pierre Lescanne and
Mun'delanji Vestergaard and
Ren{\'{e}} Vestergaard},
editor = {Corrado Priami},
title = {Rewriting Game Theory as a Foundation for State-Based Models of Gene
Regulation},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4210},
pages = {257--270},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11885191\_18},
doi = {10.1007/11885191\_18},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/ChettaouiDLVV06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/ChiarugiCDBM06,
author = {Davide Chiarugi and
M. Chinellato and
Pierpaolo Degano and
G. Lo Brutto and
Roberto Marangoni},
editor = {Corrado Priami},
title = {Feedbacks and Oscillations in the Virtual Cell {VICE}},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4210},
pages = {93--107},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11885191\_7},
doi = {10.1007/11885191\_7},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/ChiarugiCDBM06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/FagesS06,
author = {Fran{\c{c}}ois Fages and
Sylvain Soliman},
editor = {Corrado Priami},
title = {Type Inference in Systems Biology},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4210},
pages = {48--62},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11885191\_4},
doi = {10.1007/11885191\_4},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/FagesS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/FilipponeMRMB06,
author = {Maurizio Filippone and
Francesco Masulli and
Stefano Rovetta and
Sushmita Mitra and
Haider Banka},
editor = {Corrado Priami},
title = {Possibilistic Approach to Biclustering: An Application to Oligonucleotide
Microarray Data Analysis},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4210},
pages = {312--322},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11885191\_22},
doi = {10.1007/11885191\_22},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/FilipponeMRMB06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/GambaCCTCBS06,
author = {Andrea Gamba and
Antonio de Candia and
Fausto Cavalli and
Stefano Di Talia and
Antonio Coniglio and
Federico Bussolino and
Guido Serini},
editor = {Corrado Priami},
title = {A Computational Model for Eukaryotic Directional Sensing},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4210},
pages = {184--195},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11885191\_13},
doi = {10.1007/11885191\_13},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/GambaCCTCBS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Gossler06,
author = {Gregor G{\"{o}}{\ss}ler},
editor = {Corrado Priami},
title = {Compositional Reachability Analysis of Genetic Networks},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4210},
pages = {212--226},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11885191\_15},
doi = {10.1007/11885191\_15},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/Gossler06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/GrantH06,
author = {Mark R. Grant and
C. Anthony Hunt},
editor = {Corrado Priami},
title = {An In Silico Analogue of In Vitro Systems Used to Study Epithelial
Cell Morphogenesis},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4210},
pages = {285--297},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11885191\_20},
doi = {10.1007/11885191\_20},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/GrantH06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/HeathKNPT06,
author = {John Heath and
Marta Z. Kwiatkowska and
Gethin Norman and
David Parker and
Oksana Tymchyshyn},
editor = {Corrado Priami},
title = {Probabilistic Model Checking of Complex Biological Pathways},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4210},
pages = {32--47},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11885191\_3},
doi = {10.1007/11885191\_3},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/HeathKNPT06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/KnijnenburgWR06,
author = {Theo A. Knijnenburg and
Lodewyk F. A. Wessels and
Marcel J. T. Reinders},
editor = {Corrado Priami},
title = {Condition Transition Analysis Reveals {TF} Activity Related to Nutrient-Limitation-Specific
Effects of Oxygen Presence in Yeast},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4210},
pages = {271--284},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11885191\_19},
doi = {10.1007/11885191\_19},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/KnijnenburgWR06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/LagomarsinoJB06,
author = {Marco Cosentino Lagomarsino and
P. Jona and
Bruno Bassetti},
editor = {Corrado Priami},
title = {Randomization and Feedback Properties of Directed Graphs Inspired
by Gene Networks},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4210},
pages = {227--241},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11885191\_16},
doi = {10.1007/11885191\_16},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/LagomarsinoJB06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/MiculanB06,
author = {Marino Miculan and
Giorgio Bacci},
editor = {Corrado Priami},
title = {Modal Logics for Brane Calculus},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4210},
pages = {1--16},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11885191\_1},
doi = {10.1007/11885191\_1},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/MiculanB06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Prandi06,
author = {Davide Prandi},
editor = {Corrado Priami},
title = {A Formal Approach to Molecular Docking},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4210},
pages = {78--92},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11885191\_6},
doi = {10.1007/11885191\_6},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/Prandi06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/SanguinettiRL06,
author = {Guido Sanguinetti and
Magnus Rattray and
Neil D. Lawrence},
editor = {Corrado Priami},
title = {Identifying Submodules of Cellular Regulatory Networks},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4210},
pages = {155--168},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11885191\_11},
doi = {10.1007/11885191\_11},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/SanguinettiRL06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/SguanciLB06,
author = {Luca Sguanci and
Pietro Li{\`{o}} and
Franco Bagnoli},
editor = {Corrado Priami},
title = {Modeling Evolutionary Dynamics of {HIV} Infection},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4210},
pages = {196--211},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11885191\_14},
doi = {10.1007/11885191\_14},
timestamp = {Fri, 02 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/SguanciLB06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/SiebertB06,
author = {Heike Siebert and
Alexander Bockmayr},
editor = {Corrado Priami},
title = {Incorporating Time Delays into the Logical Analysis of Gene Regulatory
Networks},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4210},
pages = {169--183},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11885191\_12},
doi = {10.1007/11885191\_12},
timestamp = {Fri, 02 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/SiebertB06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/StegglesBW06,
author = {L. Jason Steggles and
Richard Banks and
Anil Wipat},
editor = {Corrado Priami},
title = {Modelling and Analysing Genetic Networks: From Boolean Networks to
Petri Nets},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4210},
pages = {127--141},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11885191\_9},
doi = {10.1007/11885191\_9},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/StegglesBW06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/WilczynskiT06,
author = {Bartek Wilczynski and
Jerzy Tiuryn},
editor = {Corrado Priami},
title = {Regulatory Network Reconstruction Using Stochastic Logical Networks},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4210},
pages = {142--154},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11885191\_10},
doi = {10.1007/11885191\_10},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/WilczynskiT06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/cmsb/2006,
editor = {Corrado Priami},
title = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4210},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11885191},
doi = {10.1007/11885191},
isbn = {3-540-46166-3},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/2006.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/cmsb/2004,
editor = {Vincent Danos and
Vincent Sch{\"{a}}chter},
title = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {3082},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/b107287},
doi = {10.1007/B107287},
isbn = {3-540-25375-0},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/2004.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BenteleE04,
author = {Martin Bentele and
Roland Eils},
editor = {Vincent Danos and
Vincent Sch{\"{a}}chter},
title = {General Stochastic Hybrid Method for the Simulation of Chemical Reaction
Processes in Cells},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {3082},
pages = {248--251},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-25974-9\_22},
doi = {10.1007/978-3-540-25974-9\_22},
timestamp = {Tue, 14 May 2019 10:00:49 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/BenteleE04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BockmayrCEV04,
author = {Alexander Bockmayr and
Arnaud Courtois and
Damien Eveillard and
M. Vezain},
editor = {Vincent Danos and
Vincent Sch{\"{a}}chter},
title = {Building and Analysing an Integrative Model of {HIV-1} {RNA} Alternative
Splicing},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {3082},
pages = {43--57},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-25974-9\_5},
doi = {10.1007/978-3-540-25974-9\_5},
timestamp = {Fri, 02 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/BockmayrCEV04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Bosnacki04,
author = {Dragan Bosnacki},
editor = {Vincent Danos and
Vincent Sch{\"{a}}chter},
title = {Black Box Checking for Biochemical Networks},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {3082},
pages = {225--230},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-25974-9\_18},
doi = {10.1007/978-3-540-25974-9\_18},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/Bosnacki04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Cardelli04,
author = {Luca Cardelli},
editor = {Vincent Danos and
Vincent Sch{\"{a}}chter},
title = {Brane Calculi},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {3082},
pages = {257--278},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-25974-9\_24},
doi = {10.1007/978-3-540-25974-9\_24},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/Cardelli04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Chabrier-RivierFS04,
author = {Nathalie Chabrier{-}Rivier and
Fran{\c{c}}ois Fages and
Sylvain Soliman},
editor = {Vincent Danos and
Vincent Sch{\"{a}}chter},
title = {The Biochemical Abstract Machine {BIOCHAM}},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {3082},
pages = {172--191},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-25974-9\_14},
doi = {10.1007/978-3-540-25974-9\_14},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/Chabrier-RivierFS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/ChaumeGCGL04,
author = {Denys Chaume and
V{\'{e}}ronique Giudicelli and
Kora Combres and
Chantal Ginestoux and
Marie{-}Paule Lefranc},
editor = {Vincent Danos and
Vincent Sch{\"{a}}chter},
title = {IMGT-Choreography: Processing of Complex Immunogenetics Knowledge},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {3082},
pages = {73--84},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-25974-9\_7},
doi = {10.1007/978-3-540-25974-9\_7},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/ChaumeGCGL04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/ChiarugiCDM04,
author = {Davide Chiarugi and
Michele Curti and
Pierpaolo Degano and
Roberto Marangoni},
editor = {Vincent Danos and
Vincent Sch{\"{a}}chter},
title = {{VICE:} {A} VIrtual CEll},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {3082},
pages = {207--220},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-25974-9\_16},
doi = {10.1007/978-3-540-25974-9\_16},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/ChiarugiCDM04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/DanosP04,
author = {Vincent Danos and
Sylvain Pradalier},
editor = {Vincent Danos and
Vincent Sch{\"{a}}chter},
title = {Projective Brane Calculus},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {3082},
pages = {134--148},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-25974-9\_11},
doi = {10.1007/978-3-540-25974-9\_11},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/DanosP04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/FanchonCTHG04,
author = {Eric Fanchon and
Fabien Corblin and
Laurent Trilling and
Bastien Hermant and
Danielle Gulino},
editor = {Vincent Danos and
Vincent Sch{\"{a}}chter},
title = {Modeling the Molecular Network Controlling Adhesion Between Human
Endothelial Cells: Inference and Simulation Using Constraint Logic
Programming},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {3082},
pages = {104--118},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-25974-9\_9},
doi = {10.1007/978-3-540-25974-9\_9},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/FanchonCTHG04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Finney04,
author = {Andrew Finney},
editor = {Vincent Danos and
Vincent Sch{\"{a}}chter},
title = {Developing {SBML} Beyond Level 2: Proposals for Development},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {3082},
pages = {242--247},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-25974-9\_21},
doi = {10.1007/978-3-540-25974-9\_21},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/Finney04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/FisherHHPSS04,
author = {Jasmin Fisher and
David Harel and
E. Jane Albert Hubbard and
Nir Piterman and
Michael J. Stern and
Naamah Swerdlin},
editor = {Vincent Danos and
Vincent Sch{\"{a}}chter},
title = {Combining State-Based and Scenario-Based Approaches in Modeling Biological
Systems},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {3082},
pages = {236--241},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-25974-9\_20},
doi = {10.1007/978-3-540-25974-9\_20},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/FisherHHPSS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/HuntRRY04,
author = {C. Anthony Hunt and
Glen E. P. Ropella and
Michael S. Roberts and
Li Yan},
editor = {Vincent Danos and
Vincent Sch{\"{a}}chter},
title = {Biomimetic in Silico Devices},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {3082},
pages = {34--42},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-25974-9\_4},
doi = {10.1007/978-3-540-25974-9\_4},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/HuntRRY04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/ImotoHKJM04,
author = {Seiya Imoto and
Tomoyuki Higuchi and
SunYong Kim and
Euna Jeong and
Satoru Miyano},
editor = {Vincent Danos and
Vincent Sch{\"{a}}chter},
title = {Residual Bootstrapping and Median Filtering for Robust Estimation
of Gene Networks from Microarray Data},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {3082},
pages = {149--160},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-25974-9\_12},
doi = {10.1007/978-3-540-25974-9\_12},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/ImotoHKJM04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/LodhiM04,
author = {Huma Lodhi and
Stephen H. Muggleton},
editor = {Vincent Danos and
Vincent Sch{\"{a}}chter},
title = {Modelling Metabolic Pathways Using Stochastic Logic Programs-Based
Ensemble Methods},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {3082},
pages = {119--133},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-25974-9\_10},
doi = {10.1007/978-3-540-25974-9\_10},
timestamp = {Sat, 30 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/LodhiM04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/MardarePQV04,
author = {Radu Mardare and
Corrado Priami and
Paola Quaglia and
Oleksandr Vagin},
editor = {Vincent Danos and
Vincent Sch{\"{a}}chter},
title = {Model Checking Biological Systems Described Using Ambient Calculus},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {3082},
pages = {85--103},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-25974-9\_8},
doi = {10.1007/978-3-540-25974-9\_8},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/MardarePQV04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/NemeM04,
author = {Antonio Neme and
Pedro Miramontes},
editor = {Vincent Danos and
Vincent Sch{\"{a}}chter},
title = {Biological Domain Identification Based in Codon Usage by Means of
Rule and Tree Induction},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {3082},
pages = {221--224},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-25974-9\_17},
doi = {10.1007/978-3-540-25974-9\_17},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/NemeM04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/OnsumA04,
author = {Matthew D. Onsum and
Adam P. Arkin},
editor = {Vincent Danos and
Vincent Sch{\"{a}}chter},
title = {Autonomous Mobile Robot Control Based on White Blood Cell Chemotaxis},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {3082},
pages = {9--19},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-25974-9\_2},
doi = {10.1007/978-3-540-25974-9\_2},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/OnsumA04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/PazosGGTLV04,
author = {Florencio Pazos and
David Guijas and
Manuel J. G{\'{o}}mez and
Almudena Trigo and
Victor de Lorenzo and
Alfonso Valencia},
editor = {Vincent Danos and
Vincent Sch{\"{a}}chter},
title = {The Biodegradation Network, a New Scenario for Computational Systems
Biology Research},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {3082},
pages = {252--256},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-25974-9\_23},
doi = {10.1007/978-3-540-25974-9\_23},
timestamp = {Sat, 19 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/PazosGGTLV04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/PozziVM04,
author = {Sergio Pozzi and
Gianluca Della Vedova and
Giancarlo Mauri},
editor = {Vincent Danos and
Vincent Sch{\"{a}}chter},
title = {An Explicit Upper Bound for the Approximation Ratio of the Maximum
Gene Regulatory Network Problem},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {3082},
pages = {1--8},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-25974-9\_1},
doi = {10.1007/978-3-540-25974-9\_1},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/PozziVM04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/PriamiQ04,
author = {Corrado Priami and
Paola Quaglia},
editor = {Vincent Danos and
Vincent Sch{\"{a}}chter},
title = {Beta Binders for Biological Interactions},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {3082},
pages = {20--33},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-25974-9\_3},
doi = {10.1007/978-3-540-25974-9\_3},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/PriamiQ04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/RichardCB04,
author = {Adrien Richard and
Jean{-}Paul Comet and
Gilles Bernot},
editor = {Vincent Danos and
Vincent Sch{\"{a}}chter},
title = {Graph-Based Modeling of Biological Regulatory Networks: Introduction
of Singular States},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {3082},
pages = {58--72},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-25974-9\_6},
doi = {10.1007/978-3-540-25974-9\_6},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/RichardCB04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/SolimanF04,
author = {Sylvain Soliman and
Fran{\c{c}}ois Fages},
editor = {Vincent Danos and
Vincent Sch{\"{a}}chter},
title = {CMBSlib: {A} Library for Comparing Formalisms and Models of Biological
Systems},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {3082},
pages = {231--235},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-25974-9\_19},
doi = {10.1007/978-3-540-25974-9\_19},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/SolimanF04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/UhrmacherDLK04,
author = {Adelinde M. Uhrmacher and
Daniela Degenring and
Jens Lemcke and
Mario Krahmer},
editor = {Vincent Danos and
Vincent Sch{\"{a}}chter},
title = {Towards Reusing Model Components in Systems Biology},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {3082},
pages = {192--206},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-25974-9\_15},
doi = {10.1007/978-3-540-25974-9\_15},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/UhrmacherDLK04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/VolzEABHKE04,
author = {Dietmar Volz and
Martin Eigel and
Chaitanya A. Athale and
Peter Bastian and
Harald Hermann and
Constantin Kappel and
Roland Eils},
editor = {Vincent Danos and
Vincent Sch{\"{a}}chter},
title = {Spatial Modeling and Simulation of Diffusion in Nuclei of Living Cells},
booktitle = {Computational Methods in Systems Biology, International Conference,
{CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {3082},
pages = {161--171},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-25974-9\_13},
doi = {10.1007/978-3-540-25974-9\_13},
timestamp = {Fri, 29 Mar 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/VolzEABHKE04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/AntoniottiMPPS03,
author = {Marco Antoniotti and
Bhubaneswar Mishra and
Carla Piazza and
Alberto Policriti and
Marta Simeoni},
editor = {Corrado Priami},
title = {Modeling Cellular Behavior with Hybrid Automata: Bisimulation and
Collapsing},
booktitle = {Computational Methods in Systems Biology, First International Workshop,
{CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2602},
pages = {57--74},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/3-540-36481-1\_6},
doi = {10.1007/3-540-36481-1\_6},
timestamp = {Tue, 14 May 2019 10:00:49 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/AntoniottiMPPS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/BadeaT03,
author = {Liviu Badea and
Doina Tilivea},
editor = {Corrado Priami},
title = {Integrating Biological Process Modelling with Gene Expression Data
and Ontologies for Functional Genomics},
booktitle = {Computational Methods in Systems Biology, First International Workshop,
{CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2602},
pages = {187--193},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/3-540-36481-1\_27},
doi = {10.1007/3-540-36481-1\_27},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/BadeaT03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Casey03,
author = {Will Casey},
editor = {Corrado Priami},
title = {Coupled Oscillator Models for a Set of Communicating Cells},
booktitle = {Computational Methods in Systems Biology, First International Workshop,
{CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2602},
pages = {163},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/3-540-36481-1\_14},
doi = {10.1007/3-540-36481-1\_14},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/Casey03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/ChabrierF03,
author = {Nathalie Chabrier and
Fran{\c{c}}ois Fages},
editor = {Corrado Priami},
title = {Symbolic Model Checking of Biochemical Networks},
booktitle = {Computational Methods in Systems Biology, First International Workshop,
{CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2602},
pages = {149--162},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/3-540-36481-1\_13},
doi = {10.1007/3-540-36481-1\_13},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/ChabrierF03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/ChiaveriniD03,
author = {Marc Chiaverini and
Vincent Danos},
editor = {Corrado Priami},
title = {A Core Modeling Language for the Working Molecular Biologist (Abstract)},
booktitle = {Computational Methods in Systems Biology, First International Workshop,
{CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2602},
pages = {166},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/3-540-36481-1\_16},
doi = {10.1007/3-540-36481-1\_16},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/ChiaveriniD03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/ChoCW03,
author = {Kwang{-}Hyun Cho and
Jong{-}Ho Cha and
Olaf Wolkenhauer},
editor = {Corrado Priami},
title = {How to Synthesize an Optimized Genetic-Switching System? {A} System-Theoretic
Approach Based on {SQP}},
booktitle = {Computational Methods in Systems Biology, First International Workshop,
{CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2602},
pages = {170},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/3-540-36481-1\_19},
doi = {10.1007/3-540-36481-1\_19},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/ChoCW03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/ChoSKWMK03,
author = {Kwang{-}Hyun Cho and
Sung{-}Young Shin and
Hyun Woo Kim and
Olaf Wolkenhauer and
Brian McFerran and
Walter Kolch},
editor = {Corrado Priami},
title = {Mathematical Modeling of the Influence of {RKIP} on the {ERK} Signaling
Pathway},
booktitle = {Computational Methods in Systems Biology, First International Workshop,
{CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2602},
pages = {127--141},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/3-540-36481-1\_11},
doi = {10.1007/3-540-36481-1\_11},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/ChoSKWMK03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/ChoSLW03,
author = {Kwang{-}Hyun Cho and
Sung{-}Young Shin and
Hyeon{-}Woo Lee and
Olaf Wolkenhauer},
editor = {Corrado Priami},
title = {Simulation Study of the {TNF} alpha Mediated NF-kappa {B} Signaling
Pathway},
booktitle = {Computational Methods in Systems Biology, First International Workshop,
{CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2602},
pages = {171},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/3-540-36481-1\_20},
doi = {10.1007/3-540-36481-1\_20},
timestamp = {Fri, 02 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/ChoSLW03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/CiobanuH03,
author = {Gabriel Ciobanu and
Dorin Huzum},
editor = {Corrado Priami},
title = {Discrete Event Systems and Client-Server Model for Signaling Mechanisms},
booktitle = {Computational Methods in Systems Biology, First International Workshop,
{CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2602},
pages = {175--177},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/3-540-36481-1\_24},
doi = {10.1007/3-540-36481-1\_24},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/CiobanuH03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Corpas03,
author = {Manuel Corpas},
editor = {Corrado Priami},
title = {Integrating Simulation Packages via Systems Biology Mark-Up Language},
booktitle = {Computational Methods in Systems Biology, First International Workshop,
{CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2602},
pages = {167},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/3-540-36481-1\_17},
doi = {10.1007/3-540-36481-1\_17},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/Corpas03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/CurtiDB03,
author = {Michele Curti and
Pierpaolo Degano and
Cosima Tatiana Baldari},
editor = {Corrado Priami},
title = {Causal pi-Calculus for Biochemical Modelling},
booktitle = {Computational Methods in Systems Biology, First International Workshop,
{CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2602},
pages = {21--33},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/3-540-36481-1\_3},
doi = {10.1007/3-540-36481-1\_3},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/CurtiDB03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/DanosL03,
author = {Vincent Danos and
Cosimo Laneve},
editor = {Corrado Priami},
title = {Graphs for Core Molecular Biology},
booktitle = {Computational Methods in Systems Biology, First International Workshop,
{CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2602},
pages = {34--46},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/3-540-36481-1\_4},
doi = {10.1007/3-540-36481-1\_4},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/DanosL03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/DeganoP03,
author = {Pierpaolo Degano and
Corrado Priami},
editor = {Corrado Priami},
title = {Enhanced Operational Semantics in Systems Biology},
booktitle = {Computational Methods in Systems Biology, First International Workshop,
{CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2602},
pages = {178--181},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/3-540-36481-1\_25},
doi = {10.1007/3-540-36481-1\_25},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/DeganoP03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/DegenringRU03,
author = {Daniela Degenring and
Mathias R{\"{o}}hl and
Adelinde M. Uhrmacher},
editor = {Corrado Priami},
title = {Discrete Event Simulation for a Better Understanding of Metabolite
Channeling - {A} System Theoretic Approach},
booktitle = {Computational Methods in Systems Biology, First International Workshop,
{CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2602},
pages = {114--126},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/3-540-36481-1\_10},
doi = {10.1007/3-540-36481-1\_10},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/DegenringRU03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/DevilleGHW03,
author = {Yves Deville and
David R. Gilbert and
Jacques van Helden and
Shoshana J. Wodak},
editor = {Corrado Priami},
title = {An Overview of Data Models for the Analysis of Biochemical Pathways},
booktitle = {Computational Methods in Systems Biology, First International Workshop,
{CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2602},
pages = {174},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/3-540-36481-1\_23},
doi = {10.1007/3-540-36481-1\_23},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/DevilleGHW03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/DillL03,
author = {David L. Dill and
Patrick Lincoln},
editor = {Corrado Priami},
title = {Evolution as Design Engineer},
booktitle = {Computational Methods in Systems Biology, First International Workshop,
{CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2602},
pages = {202--206},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/3-540-36481-1\_30},
doi = {10.1007/3-540-36481-1\_30},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/DillL03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/EkerLLST03,
author = {Steven Eker and
Keith Laderoute and
Patrick Lincoln and
M. G. Sriram and
Carolyn L. Talcott},
editor = {Corrado Priami},
title = {Representing and Simulating Protein Functional Domains in Signal Transduction
Using Maude},
booktitle = {Computational Methods in Systems Biology, First International Workshop,
{CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2602},
pages = {164--165},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/3-540-36481-1\_15},
doi = {10.1007/3-540-36481-1\_15},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/EkerLLST03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/EveillardRJBB03,
author = {Damien Eveillard and
Delphine Ropers and
Hidde de Jong and
Christiane Branlant and
Alexander Bockmayr},
editor = {Corrado Priami},
title = {Multiscale Modeling of Alternative Splicing Regulation},
booktitle = {Computational Methods in Systems Biology, First International Workshop,
{CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2602},
pages = {75--87},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/3-540-36481-1\_7},
doi = {10.1007/3-540-36481-1\_7},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/EveillardRJBB03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/HeinerKW03,
author = {Monika Heiner and
Ina Koch and
J{\"{u}}rgen Will},
editor = {Corrado Priami},
title = {Model Validation of Biological Pathways Using Petri Nets - Demonstrated
for Apoptosis},
booktitle = {Computational Methods in Systems Biology, First International Workshop,
{CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2602},
pages = {173},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/3-540-36481-1\_22},
doi = {10.1007/3-540-36481-1\_22},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/HeinerKW03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/KamHKMPHS03,
author = {Na'aman Kam and
David Harel and
Hillel Kugler and
Rami Marelly and
Amir Pnueli and
E. Jane Albert Hubbard and
Michael J. Stern},
editor = {Corrado Priami},
title = {Formal Modeling of C. elegans Development: {A} Scenario-Based Approach},
booktitle = {Computational Methods in Systems Biology, First International Workshop,
{CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2602},
pages = {4--20},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/3-540-36481-1\_2},
doi = {10.1007/3-540-36481-1\_2},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/KamHKMPHS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/KimIM03,
author = {SunYong Kim and
Seiya Imoto and
Satoru Miyano},
editor = {Corrado Priami},
title = {Dynamic Bayesian Network and Nonparametric Regression for Nonlinear
Modeling of Gene Networks from Time Series Gene Expression Data},
booktitle = {Computational Methods in Systems Biology, First International Workshop,
{CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2602},
pages = {104--113},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/3-540-36481-1\_9},
doi = {10.1007/3-540-36481-1\_9},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/KimIM03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Lancet03,
author = {Doron Lancet},
editor = {Corrado Priami},
title = {Computer Simulation of Protocells},
booktitle = {Computational Methods in Systems Biology, First International Workshop,
{CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2602},
pages = {194--197},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/3-540-36481-1\_28},
doi = {10.1007/3-540-36481-1\_28},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/Lancet03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Langmack03,
author = {Olaf Langmack},
editor = {Corrado Priami},
title = {How to Solve Semantic Puzzles of Systems Biology},
booktitle = {Computational Methods in Systems Biology, First International Workshop,
{CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2602},
pages = {198--201},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/3-540-36481-1\_29},
doi = {10.1007/3-540-36481-1\_29},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/Langmack03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/LemkeHBM03,
author = {Ney Lemke and
Fabiana Her{\'{e}}dia and
Cl{\'{a}}udia K. Barcellos and
Jos{\'{e}} C. M. Mombach},
editor = {Corrado Priami},
title = {A Method to Identify Essential Enzymes in the Metabolism: Application
to Escherichia Coli},
booktitle = {Computational Methods in Systems Biology, First International Workshop,
{CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2602},
pages = {142--148},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/3-540-36481-1\_12},
doi = {10.1007/3-540-36481-1\_12},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/LemkeHBM03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Miyano03,
author = {Satoru Miyano},
editor = {Corrado Priami},
title = {Inference, Modeling and Simulation of Gene Networks},
booktitle = {Computational Methods in Systems Biology, First International Workshop,
{CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2602},
pages = {207--211},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/3-540-36481-1\_31},
doi = {10.1007/3-540-36481-1\_31},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/Miyano03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/NagasakiDMM03,
author = {Masao Nagasaki and
Atsushi Doi and
Hiroshi Matsuno and
Satoru Miyano},
editor = {Corrado Priami},
title = {Recreating Biopathway Databases towards Simulation},
booktitle = {Computational Methods in Systems Biology, First International Workshop,
{CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2602},
pages = {168--169},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/3-540-36481-1\_18},
doi = {10.1007/3-540-36481-1\_18},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/NagasakiDMM03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/PagnoniV03,
author = {Anastasia Pagnoni and
Andrea Visconti},
editor = {Corrado Priami},
title = {Detection and Analysis of Unexpected State Components in Biological
Systems},
booktitle = {Computational Methods in Systems Biology, First International Workshop,
{CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2602},
pages = {172},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/3-540-36481-1\_21},
doi = {10.1007/3-540-36481-1\_21},
timestamp = {Sat, 16 Sep 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/PagnoniV03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/PeresC03,
author = {Sabine P{\'{e}}r{\`{e}}s and
Jean{-}Paul Comet},
editor = {Corrado Priami},
title = {Contribution of Computational Tree Logic to Biological Regulatory
Networks: Example from Pseudomonas Aeruginosa},
booktitle = {Computational Methods in Systems Biology, First International Workshop,
{CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2602},
pages = {47--56},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/3-540-36481-1\_5},
doi = {10.1007/3-540-36481-1\_5},
timestamp = {Tue, 14 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/PeresC03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/RegevS03,
author = {Amitai Regev and
Ehud Shapiro},
editor = {Corrado Priami},
title = {Cells as Computation},
booktitle = {Computational Methods in Systems Biology, First International Workshop,
{CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2602},
pages = {1--3},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/3-540-36481-1\_1},
doi = {10.1007/3-540-36481-1\_1},
timestamp = {Thu, 04 Oct 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/RegevS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/RousuRMPSU03,
author = {Juho Rousu and
Ari Rantanen and
Hannu Maaheimo and
Esa Pitk{\"{a}}nen and
Katja Saarela and
Esko Ukkonen},
editor = {Corrado Priami},
title = {A Method for Estimating Metabolic Fluxes from Incomplete Isotopomer
Information},
booktitle = {Computational Methods in Systems Biology, First International Workshop,
{CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2602},
pages = {88--103},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/3-540-36481-1\_8},
doi = {10.1007/3-540-36481-1\_8},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/RousuRMPSU03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/Roux-RouquieHIA03,
author = {Magali Roux{-}Rouqui{\'{e}} and
Leroy E. Hood and
Sandrine Imbeaud and
Charles Auffray},
editor = {Corrado Priami},
title = {Issues in Computational Methods for Functional Genomics and Systems
Biology},
booktitle = {Computational Methods in Systems Biology, First International Workshop,
{CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2602},
pages = {182--186},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/3-540-36481-1\_26},
doi = {10.1007/3-540-36481-1\_26},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/Roux-RouquieHIA03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/cmsb/2003,
editor = {Corrado Priami},
title = {Computational Methods in Systems Biology, First International Workshop,
{CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2602},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/3-540-36481-1},
doi = {10.1007/3-540-36481-1},
isbn = {3-540-00605-2},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/2003.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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