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ORCIDRuslan N. Sharipov
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- affiliation: Institute of Systems Biology, Novosibirsk
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Journal Articles
- 2022
[j11]Fedor A. Kolpakov
, Ilya R. Akberdin, Ilya Kiselev, Semyon Kolmykov, Yury V. Kondrakhin, Mikhail Kulyashov, Elena Kutumova, Sergey Pintus, Anna Ryabova, Ruslan N. Sharipov, Ivan S. Yevshin, Sergey Zhatchenko, Alexander E. Kel:
BioUML - towards a universal research platform. Nucleic Acids Res. 50(W1): 124-131 (2022)- 2021
- [j10]Semyon Kolmykov, Ivan S. Yevshin, Mikhail Kulyashov, Ruslan N. Sharipov, Yury V. Kondrakhin, Vsevolod J. Makeev, Ivan V. Kulakovskiy, Alexander E. Kel, Fedor A. Kolpakov:
GTRD: an integrated view of transcription regulation. Nucleic Acids Res. 49(Database-Issue): D104-D111 (2021) - 2019
- [j9]Ivan S. Yevshin, Ruslan N. Sharipov, Semyon Kolmykov, Yury V. Kondrakhin, Fedor A. Kolpakov:
GTRD: a database on gene transcription regulation - 2019 update. Nucleic Acids Res. 47(Database-Issue): D100-D105 (2019) - [j8]Fedor A. Kolpakov, Ilya R. Akberdin, Timur A. Kashapov, llya Kiselev, Semyon Kolmykov, Yury V. Kondrakhin, Elena Kutumova, Nikita Mandrik, Sergey S. Pintus, Anna Ryabova, Ruslan N. Sharipov, Ivan S. Yevshin, Alexander E. Kel:
BioUML: an integrated environment for systems biology and collaborative analysis of biomedical data. Nucleic Acids Res. 47(Webserver-Issue): W225-W133 (2019) - 2018
- [j7]Oxana A. Volkova, Yury V. Kondrakhin, Timur A. Kashapov, Ruslan N. Sharipov:
Comparative analysis of protein-coding and long non-coding transcripts based on RNA sequence features. J. Bioinform. Comput. Biol. 16(2): 1840013:1-1840013:14 (2018) - [j6]Ivan V. Kulakovskiy, Ilya E. Vorontsov, Ivan S. Yevshin, Ruslan N. Sharipov, Alla D. Fedorova, Eugene I. Rumynskiy, Yulia A. Medvedeva, Arturo Magana-Mora, Vladimir B. Bajic, Dmitri A. Papatsenko, Fedor A. Kolpakov, Vsevolod J. Makeev:
HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis. Nucleic Acids Res. 46(Database-Issue): D252-D259 (2018) - 2017
- [j5]Ivan S. Yevshin, Ruslan N. Sharipov, Tagir F. Valeev, Alexander E. Kel, Fedor A. Kolpakov:
GTRD: a database of transcription factor binding sites identified by ChIP-seq experiments. Nucleic Acids Res. 45(Database-Issue): D61-D67 (2017) - 2016
- [j4]Oxana A. Volkova, Yury V. Kondrakhin, Ivan S. Yevshin, Tagir F. Valeev, Ruslan N. Sharipov:
Assessment of translational importance of mammalian mRNA sequence features based on Ribo-Seq and mRNA-Seq data. J. Bioinform. Comput. Biol. 14(2): 1641006:1-1641006:15 (2016) - 2013
- [j3]Elena Kutumova, Andrei Yu. Zinovyev, Ruslan N. Sharipov, Fedor A. Kolpakov:
Model composition through model reduction: a combined model of CD95 and NF-κ. BMC Syst. Biol. 7: 13 (2013) - 2008
- [j2]Yury V. Kondrakhin, Ruslan N. Sharipov, Alexander E. Kel, Fedor A. Kolpakov:
Identification of Differentially Expressed Genes by Meta-Analysis of Microarray Data on Breast Cancer. Silico Biol. 8(5-6): 383-411 (2008) - 2007
- [j1]Fedor A. Kolpakov, Vladimir Poroikov, Ruslan N. Sharipov, Yury V. Kondrakhin, Alexey V. Zakharov, Alexey Lagunin, Luciano Milanesi, Alexander E. Kel:
CYCLONET - an integrated database on cell cycle regulation and carcinogenesis. Nucleic Acids Res. 35(Database-Issue): 550-556 (2007)
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