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ORCIDPaolo Ribeca
Person information
- affiliation: Biomathematics and Statistics Scotland (BioSS), Edinburgh, UK
- affiliation: Centre Nacional d'Anàlisi Genòmica (CNAG), Barcelona, Spain
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Journal Articles
- 2023
[j5]Xavier Didelot
, David Helekal, Michelle Kendall, Paolo Ribeca:
Distinguishing imported cases from locally acquired cases within a geographically limited genomic sample of an infectious disease. Bioinform. 39(1) (2023)- 2015
- [j4]Alejandro Chacón, Santiago Marco-Sola, Antonio Espinosa, Paolo Ribeca, Juan Carlos Moure:
Boosting the FM-Index on the GPU: Effective Techniques to Mitigate Random Memory Access. IEEE ACM Trans. Comput. Biol. Bioinform. 12(5): 1048-1059 (2015) - 2011
- [j3]Paolo Ribeca, Gabriel Valiente:
Computational challenges of sequence classification in microbiomic data. Briefings Bioinform. 12(6): 614-625 (2011) - 2010
- [j2]Emanuele Raineri, Paolo Ribeca, Luis Serrano, Tobias Maier:
A more precise characterization of chaperonin substrates. Bioinform. 26(14): 1685-1689 (2010) - 2008
- [j1]Paolo Ribeca, Emanuele Raineri:
Faster exact Markovian probability functions for motif occurrences: a DFA-only approach. Bioinform. 24(24): 2839-2848 (2008)
Conference and Workshop Papers
- 2024
- [c8]Ünsal Öztürk, Utku Görkem Ertürk, Simone Casale-Brunet, Paolo Ribeca, Marco Mattavelli:
Efficient Neural Clustering and Compression of Strings Through Approximate Euclidean Embeddings of the Levenshtein Distance. DCC 2024: 575 - 2023
- [c7]Unsal Ozturk, Paolo Ribeca, Marco Mattavelli:
FM-Directories: Extending the Burrows-Wheeler Transform for String Labeled Vertex Graphs of (Almost) Arbitrary Topology. DCC 2023: 355 - [c6]Aitor Arjona, Arnau Gabriel-Atienza, Sara Lanuza-Orna, Xavier Roca-Canals, Ayman Bourramouss, Tyler K. Chafin, Lucio Marcello, Paolo Ribeca, Pedro García López:
Scaling a Variant Calling Genomics Pipeline with FaaS. WOSC@Middleware 2023: 59-64 - 2022
- [c5]Simone Casale-Brunet, Paolo Ribeca, Claudio Alberti, Unsal Ozturk, Marco Mattavelli:
A Benchmark of Entropy Coders for the Compression of Genome Sequencing Data. DCC 2022: 1 - [c4]Unsal Ozturk, Simone Casale-Brunet, Paolo Ribeca, Marco Mattavelli:
MPEG-G Reference-Based Compression of Unaligned Reads Through Ultra-Fast Alignments. DCC 2022: 478 - 2021
- [c3]Simone Casale-Brunet, Paolo Ribeca, P. Doyle, Marco Mattavelli:
Networks of Ethereum Non-Fungible Tokens: A graph-based analysis of the ERC-721 ecosystem. Blockchain 2021: 188-195 - 2014
- [c2]Alejandro Chacón, Santiago Marco-Sola, Antonio Espinosa, Paolo Ribeca, Juan Carlos Moure:
Thread-cooperative, bit-parallel computation of levenshtein distance on GPU. ICS 2014: 103-112 - [c1]Alejandro Chacón, Santiago Marco-Sola, Antonio Espinosa, Paolo Ribeca, Juan Carlos Moure:
FM-Index on GPU: A Cooperative Scheme to Reduce Memory Footprint. ISPA 2014: 1-9
Informal and Other Publications
- 2023
- [i3]Aitor Arjona, Arnau Gabriel-Atienza, Sara Lanuza-Orna, Xavier Roca-Canals, Ayman Bourramouss, Tyler K. Chafin, Lucio Marcello, Paolo Ribeca, Pedro García López:
Scaling a Variant Calling Genomics Pipeline with FaaS. CoRR abs/2312.07090 (2023) - 2021
- [i2]Simone Casale-Brunet, Paolo Ribeca, P. Doyle, Marco Mattavelli:
Networks of Ethereum Non-Fungible Tokens: A graph-based analysis of the ERC-721 ecosystem. CoRR abs/2110.12545 (2021) - 2015
- [i1]Lukasz Roguski, Paolo Ribeca:
CARGO: Effective format-free compressed storage of genomic information. CoRR abs/1506.05185 (2015)
Coauthor Index
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