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Dennis Kostka
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2020 – today
- 2023
- [j12]Hannah Schriever, Dennis Kostka
:
Vaeda computationally annotates doublets in single-cell RNA sequencing data. Bioinform. 39(1) (2023) - [j11]Jonathan Klonowski, Qianqian Liang, Zeynep H. Coban Akdemir, Cecilia Lo, Dennis Kostka
:
aenmd: annotating escape from nonsense-mediated decay for transcripts with protein-truncating variants. Bioinform. 39(9) (2023) - [j10]Ali Tugrul Balci, Mark Maher Ebeid, Panayiotis V. Benos, Dennis Kostka
, Maria Chikina:
An intrinsically interpretable neural network architecture for sequence-to-function learning. Bioinform. 39(Supplement-1): 413-422 (2023) - 2022
- [j9]Weiguang Mao
, Maziyar Baran Pouyan, Dennis Kostka
, Maria Chikina:
Non-negative Independent Factor Analysis disentangles discrete and continuous sources of variation in scRNA-seq data. Bioinform. 38(10): 2749-2756 (2022) - 2020
- [j8]Abha S. Bais
, Dennis Kostka
:
scds: computational annotation of doublets in single-cell RNA sequencing data. Bioinform. 36(4): 1150-1158 (2020)
2010 – 2019
- 2019
- [j7]Markus List
, Azim Dehghani Amirabad, Dennis Kostka
, Marcel H. Schulz
:
Large-scale inference of competing endogenous RNA networks with sparse partial correlation. Bioinform. 35(14): i596-i604 (2019) - 2018
- [j6]Maziyar Baran Pouyan, Dennis Kostka:
Random forest based similarity learning for single cell RNA sequencing data. Bioinform. 34(13): i79-i88 (2018) - 2014
- [j5]John A. Capra, Dennis Kostka:
Modeling DNA methylation dynamics with approaches from phylogenetics. Bioinform. 30(17): 408-414 (2014) - [j4]Genevieve D. Erwin, Nir Oksenberg, Rebecca M. Truty, Dennis Kostka, Karl K. Murphy, Nadav Ahituv
, Katherine S. Pollard, John A. Capra:
Integrating Diverse Datasets Improves Developmental Enhancer Prediction. PLoS Comput. Biol. 10(6) (2014)
2000 – 2009
- 2008
- [j3]Juby Jacob, Marcel Jentsch, Dennis Kostka, Stefan Bentink, Rainer Spang
:
Detecting hierarchical structure in molecular characteristics of disease using transitive approximations of directed graphs. Bioinform. 24(7): 995-1001 (2008) - [j2]Holger Fröhlich
, Tim Beißbarth, Achim Tresch, Dennis Kostka, Juby Jacob, Rainer Spang
, Florian Markowetz:
Analyzing gene perturbation screens with nested effects models in R and bioconductor. Bioinform. 24(21): 2549-2550 (2008) - [j1]Dennis Kostka, Rainer Spang
:
Microarray Based Diagnosis Profits from Better Documentation of Gene Expression Signatures. PLoS Comput. Biol. 4(2) (2008) - 2007
- [b1]Dennis Kostka:
Methodology for exploring and communicating molecular characteristics of disease (Methodik zum Erkennen und zur Kommunikation molekularer Krankheitssignaturen). FU Berlin, Germany, 2007 - [c3]Ho-Ryun Chung, Dennis Kostka, Martin Vingron:
A physical model for tiling array analysis. ISMB/ECCB (Supplement of Bioinformatics) 2007: 80-86 - [c2]Florian Markowetz, Dennis Kostka, Olga G. Troyanskaya
, Rainer Spang
:
Nested effects models for high-dimensional phenotyping screens. ISMB/ECCB (Supplement of Bioinformatics) 2007: 305-312 - 2004
- [c1]Dennis Kostka, Rainer Spang
:
Finding disease specific alterations in the co-expression of genes. ISMB/ECCB (Supplement of Bioinformatics) 2004: 194-199
Coauthor Index
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