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ORCIDPetr Skoda 0001
Person information
- affiliation: Charles University in Prague, Faculty of Mathematics and Physics, Czech Republic
Other persons with the same name
- Petr Skoda 0002
![[0000-0002-4499-7020]](https://dblp1.uni-trier.de/img/orcid-mark.12x12.png "0000-0002-4499-7020")
— Simon Fraser University, Department of Mathematics, Burnaby, BC, Canada - Petr Skoda 0003 — Brno University of Technology, IT4Innovations Centre of Excellence, Czech Republic
- Petr Skoda 0004 — Astronomical Institute of the Academy of Sciences, Prague, Czech Republic
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Journal Articles
- 2023
[j11]Jiaoyan Chen, Hang Dong, Janna Hastings, Ernesto Jiménez-Ruiz, Vanessa López, Pierre Monnin, Catia Pesquita, Petr Skoda, Valentina A. M. Tamma:
Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities. TGDK 1(1): 5:1-5:33 (2023)- 2022
- [j10]David Bernhauer, Martin Necaský, Petr Skoda, Jakub Klímek, Tomás Skopal:
Open dataset discovery using context-enhanced similarity search. Knowl. Inf. Syst. 64(12): 3265-3291 (2022) - [j9]Mihaly Varadi, Stephen Anyango, David R. Armstrong, John M. Berrisford, Preeti Choudhary, Mandar S. Deshpande, Nurul Nadzirin, Sreenath Nair, Lukás Pravda, Ahsan Tanweer, Bissan Al-Lazikani, Claudia Andreini, Geoffrey J. Barton, David Bednar, Karel Berka, Tom L. Blundell, Kelly Brock, José María Carazo, Jirí Damborský, Alessia David, Sucharita Dey, Roland L. Dunbrack Jr., Juan Fernández-Recio, Franca Fraternali, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Thomas A. Hopf, David Jakubec, Natarajan Kannan, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Nir London, José Ramón Macías, Mallur Srivatsan Madhusudhan, Debora S. Marks, Lennart Martens, Stuart A McGowan, Jake E. McGreig, Vivek Modi, R. Gonzalo Parra, Gerardo Pepe, Damiano Piovesan, Jaime Prilusky, Valeria Putignano, Leandro G. Radusky, Pathmanaban Ramasamy, Atilio O. Rausch, Nathalie Reuter, Luis A. Rodriguez, Nathan J. Rollins, Antonio Rosato, Pawel Rubach, Luis Serrano, Gulzar Singh, Petr Skoda, Carlos Oscar Sánchez Sorzano, Jan Stourac, Joanna I. Sulkowska, Radka Svobodová Vareková, Natalia Tichshenko, Silvio C. E. Tosatto, Wim F. Vranken, Mark N. Wass, Dandan Xue, Daniel Zaidman, Janet M. Thornton, Michael J. E. Sternberg, Christine A. Orengo, Sameer Velankar:
PDBe-KB: collaboratively defining the biological context of structural data. Nucleic Acids Res. 50(D1): 534-542 (2022) - [j8]David Jakubec, Petr Skoda, Radoslav Krivák, Marian Novotny, David Hoksza:
PrankWeb 3: accelerated ligand-binding site predictions for experimental and modelled protein structures. Nucleic Acids Res. 50(W1): 593-597 (2022) - [j7]Martin Necaský, Petr Skoda, David Bernhauer, Jakub Klímek, Tomás Skopal:
Modular framework for similarity-based dataset discovery using external knowledge. Data Technol. Appl. 56(4): 506-535 (2022) - 2020
- [j6]Mihaly Varadi, John M. Berrisford, Mandar S. Deshpande, Sreenath Nair, Aleksandras Gutmanas, David R. Armstrong, Lukás Pravda, Bissan Al-Lazikani, Stephen Anyango, Geoffrey J. Barton, Karel Berka, Tom L. Blundell, Neera Borkakoti, Jose M. Dana, Sayoni Das, Sucharita Dey, Patrizio Di Micco, Franca Fraternali, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Liang-Chin Huang, Rishabh Jain, Harry Jubb, Christos C. Kannas, Natarajan Kannan, Jaroslav Koca, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Fábio Madeira, M. S. Madhusudhan, Henry J. Martell, Stuart A. MacGowan, Jake E. McGreig, Saqib Mir, Abhik Mukhopadhyay, Luca Parca, Typhaine Paysan-Lafosse, Leandro G. Radusky, António J. M. Ribeiro, Luis Serrano, Ian Sillitoe, Gulzar Singh, Petr Skoda, Radka Svobodová Vareková, Jonathan D. Tyzack, Alfonso Valencia, Eloy D. Villasclaras-Fernández, Wim F. Vranken, Mark N. Wass, Janet M. Thornton, Michael J. E. Sternberg, Christine A. Orengo, Sameer Velankar:
PDBe-KB: a community-driven resource for structural and functional annotations. Nucleic Acids Res. 48(Database-Issue): D344-D353 (2020) - 2019
- [j5]Lukás Jendele, Radoslav Krivák, Petr Skoda, Marian Novotny, David Hoksza:
PrankWeb: a web server for ligand binding site prediction and visualization. Nucleic Acids Res. 47(Webserver-Issue): W345-W349 (2019) - [j4]Jakub Klímek, Petr Skoda, Martin Necaský:
Survey of tools for Linked Data consumption. Semantic Web 10(4): 665-720 (2019) - 2018
- [j3]Tomás Knap, Peter Hanecák, Jakub Klímek, Christian Mader, Martin Necaský, Bert Van Nuffelen, Petr Skoda:
UnifiedViews: An ETL tool for RDF data management. Semantic Web 9(5): 661-676 (2018) - 2017
- [j2]Jan Jelínek, Petr Skoda, David Hoksza:
Utilizing knowledge base of amino acids structural neighborhoods to predict protein-protein interaction sites. BMC Bioinform. 18(15): 63-72 (2017) - 2014
- [j1]David Hoksza, Petr Skoda, Milan Vorsilák, Daniel Svozil:
Molpher: a software framework for systematic chemical space exploration. J. Cheminformatics 6(1): 7 (2014)
Conference and Workshop Papers
- 2023
- [c27]Jakub Klímek, Pavel Koupil, Petr Skoda, Jáchym Bártík, Stepán Stenchlák, Martin Necaský, Irena Holubová:
Atlas: A Toolset for Efficient Model-Driven Data Exchange in Data Spaces. MoDELS (Companion) 2023: 4-8 - 2022
- [c26]Stepán Stenchlák, Martin Necaský, Petr Skoda, Jakub Klímek:
DataSpecer: A Model-Driven Approach to Managing Data Specifications. ESWC (Satellite Events) 2022: 52-56 - 2021
- [c25]Tomás Skopal, David Bernhauer, Petr Skoda, Jakub Klímek, Martin Necaský:
Similarity vs. Relevance: From Simple Searches to Complex Discovery. SISAP 2021: 104-117 - 2020
- [c24]Martin Víta, Petr Skoda:
Open IE-Triples Inference - Corpora Development and DNN Architectures. FedCSIS 2020: 199-204 - [c23]Petr Skoda, David Bernhauer, Martin Necaský, Jakub Klímek, Tomás Skopal:
Evaluation Framework for Search Methods Focused on Dataset Findability in Open Data Catalogs. iiWAS 2020: 200-209 - [c22]Petr Skoda, Jakub Matejík, Tomás Skopal:
Visualizer of Dataset Similarity Using Knowledge Graph. SISAP 2020: 371-378 - 2019
- [c21]Petr Skoda, Jakub Klímek, Martin Necaský, Tomás Skopal:
Explainable Similarity of Datasets Using Knowledge Graph. SISAP 2019: 103-110 - 2018
- [c20]Jan Jelínek, Petr Skoda, David Hoksza:
Software framework for similarity-based prediction of protein interfaces. BIBM 2018: 2759-2761 - [c19]Jakub Klímek, Petr Skoda:
LinkedPipes DCAT-AP Viewer: A Native DCAT-AP Data Catalog. ISWC (P&D/Industry/BlueSky) 2018 - 2017
- [c18]Petr Skoda, David Hoksza, Jan Jelínek:
Platform for ligand-based virtual screening integration. BIBM 2017: 2256-2259 - [c17]Radoslav Krivák, David Hoksza, Petr Skoda:
Improving quality of ligand-binding site prediction with Bayesian optimization. BIBM 2017: 2278-2279 - [c16]Martin Necaský, Jakub Klímek, Petr Skoda:
Practical Use Cases for Linked Open Data in eGovernment Demonstrated on the Czech Republic. EGOVIS 2017: 80-96 - [c15]Jakub Klímek, Petr Skoda:
LinkedPipes ETL in use: practical publication and consumption of linked data. iiWAS 2017: 441-445 - [c14]Jakub Klímek, Petr Skoda:
Speeding up Publication of Linked Data Using Data Chunking in LinkedPipes ETL. OTM Conferences (2) 2017: 144-160 - 2016
- [c13]Petr Skoda, David Hoksza:
Benchmarking platform for ligand-based virtual screening. BIBM 2016: 1220-1227 - [c12]David Hoksza, Petr Skoda:
Using Bayesian modeling on molecular fragments features for virtual screening. CIBCB 2016: 1-6 - [c11]Jakub Klímek, Petr Skoda, Martin Necaský:
LinkedPipes ETL: Evolved Linked Data Preparation. ESWC (Satellite Events) 2016: 95-100 - [c10]Jan Jelínek, Petr Skoda, David Hoksza:
Utilizing knowledge base of amino acids structural neighborhoods to predict protein-protein interaction sites. ICCABS 2016: 1 - [c9]Jindrich Mynarz, Jakub Klímek, Marek Dudás, Petr Skoda, Christiane Engels, Fathoni A. Musyaffa, Vojtech Svátek:
Reusable transformations of Data Cube Vocabulary datasets from the fiscal domain. SemStats@ISWC 2016 - [c8]Jakub Klímek, Petr Skoda, Martin Necaský:
Requirements on Linked Data Consumption Platform. LDOW@WWW 2016 - 2015
- [c7]Petr Skoda, David Hoksza:
Exploration of topological torsion fingerprints. BIBM 2015: 822-828 - [c6]Tomás Knap, Petr Skoda, Jakub Klímek, Martin Necaský:
UnifiedViews: Towards ETL Tool for Simple yet Powerfull RDF Data Management. DATESO 2015: 111-120 - 2014
- [c5]David Hoksza, Petr Skoda:
Scaffold-based chemical space exploration. BIBM 2014: 1-3 - [c4]Tomás Knap, Maria Kukhar, Bohuslav Machác, Petr Skoda, Jirí Tomes, Ján Vojt:
UnifiedViews: An ETL Framework for Sustainable RDF Data Processing. ESWC (Satellite Events) 2014: 379-383 - [c3]David Hoksza, Petr Skoda:
2D Pharmacophore Query Generation. ISBRA 2014: 289-300 - 2013
- [c2]Petr Skoda, David Hoksza:
Chemical space visualization using ViFrame. ICIS 2013: 541-546 - 2009
- [c1]Petr Skoda:
Computability of Width of Submodular Partition Functions. IWOCA 2009: 450-459
Informal and Other Publications
- 2023
- [i1]Jiaoyan Chen, Hang Dong, Janna Hastings, Ernesto Jiménez-Ruiz, Vanessa López, Pierre Monnin, Catia Pesquita, Petr Skoda, Valentina A. M. Tamma:
Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities. CoRR abs/2309.17255 (2023)
Coauthor Index
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