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ORCIDDennis R. Livesay
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2010 – 2019
- 2015
[j16]Luis C. González, Hui Wang, Dennis R. Livesay, Donald J. Jacobs:
A virtual pebble game to ensemble average graph rigidity. Algorithms Mol. Biol. 10: 11 (2015)- [j15]Tong Li, Malgorzata B. Tracka, Shahid Uddin, Jose Casas-Finet, Donald J. Jacobs, Dennis R. Livesay:
Rigidity Emerges during Antibody Evolution in Three Distinct Antibody Systems: Evidence from QSFR Analysis of Fab Fragments. PLoS Comput. Biol. 11(7) (2015) - 2013
- [j14]Deeptak Verma, Donald J. Jacobs, Dennis R. Livesay:
Variations within Class-A β-Lactamase Physiochemical Properties Reflect Evolutionary and Environmental Patterns, but not Antibiotic Specificity. PLoS Comput. Biol. 9(7) (2013) - [c5]Scott Barlowe, Jing Yang, Donald J. Jacobs, Dennis R. Livesay, Jamal Alsakran, Ye Zhao, Deeptak Verma, James Mottonen:
A visual analytics approach to exploring protein flexibility subspaces. PacificVis 2013: 193-200 - 2012
- [j13]Deeptak Verma, Donald J. Jacobs, Dennis R. Livesay:
Changes in Lysozyme Flexibility upon Mutation Are Frequent, Large and Long-Ranged. PLoS Comput. Biol. 8(3) (2012) - 2011
- [j12]Scott Barlowe, Yujie Liu, Jing Yang, Dennis R. Livesay, Donald J. Jacobs, James Mottonen, Deeptak Verma:
WaveMap: Interactively Discovering Features From Protein Flexibility Matrices Using Wavelet-based Visual Analytics. Comput. Graph. Forum 30(3): 1001-1010 (2011) - [j11]K. C. Dukka Bahadur, Dennis R. Livesay:
Topology Improves Phylogenetic Motif Functional Site Predictions. IEEE ACM Trans. Comput. Biol. Bioinform. 8(1): 226-233 (2011) - [c4]Luis C. González, Dennis R. Livesay, Donald J. Jacobs:
Improving protein flexibility predictions by combining statistical sampling with a mean-field virtual Pebble Game. BCB 2011: 294-298 - 2010
- [j10]Satish Chikkagoudar
, Dennis R. Livesay, Usman Roshan:
PLAST-ncRNA: Partition function Local Alignment Search Tool for non-coding RNA sequences. Nucleic Acids Res. 38(Web-Server-Issue): 59-63 (2010)
2000 – 2009
- 2008
- [j9]K. C. Dukka Bahadur, Dennis R. Livesay:
Improving position-specific predictions of protein functional sites using phylogenetic motifs. Bioinform. 24(20): 2308-2316 (2008) - [j8]Usman Roshan, Satish Chikkagoudar, Dennis R. Livesay:
Searching for evolutionary distant RNA homologs within genomic sequences using partition function posterior probabilities. BMC Bioinform. 9 (2008) - [j7]Oleg K. Vorov, Dennis R. Livesay, Donald J. Jacobs:
Conformational Entropy of an Ideal Cross-Linking Polymer Chain. Entropy 10(3): 285-308 (2008) - 2007
- [j6]Eric Chea, Dennis R. Livesay:
How accurate and statistically robust are catalytic site predictions based on closeness centrality? BMC Bioinform. 8 (2007) - [j5]Dennis R. Livesay, Patrick D. Kidd, Sepehr Eskandari, Usman Roshan:
Assessing the ability of sequence-based methods to provide functional insight within membrane integral proteins: a case study analyzing the neurotransmitter/Na+ symporter family. BMC Bioinform. 8 (2007) - [j4]Satish Chikkagoudar, Usman Roshan, Dennis R. Livesay:
eProbalign: generation and manipulation of multiple sequence alignments using partition function posterior probabilities. Nucleic Acids Res. 35(Web-Server-Issue): 675-677 (2007) - [c3]Swati Pande, Amar Raheja, Dennis R. Livesay:
Prediction of Enzyme Catalytic Sites from Sequence Using Neural Networks. CIBCB 2007: 247-253 - 2006
- [j3]Usman Roshan, Dennis R. Livesay:
Probalign: multiple sequence alignment using partition function posterior probabilities. Bioinform. 22(22): 2715-2721 (2006) - [c2]Usman Roshan, Dennis R. Livesay, Satish Chikkagoudar:
Improving progressive alignment for phylogeny reconstruction using parsimonious guide-trees. BIBE 2006: 159-164 - 2005
- [j2]David La, Dennis R. Livesay:
Predicting functional sites with an automated algorithm suitable for heterogeneous datasets. BMC Bioinform. 6: 116 (2005) - [j1]David La, Dennis R. Livesay:
MINER: software for phylogenetic motif identification. Nucleic Acids Res. 33(Web-Server-Issue): 267-270 (2005) - [c1]Usman Roshan, Dennis R. Livesay, David La:
Improved Phylogenetic Motif Detection Using Parsimony. BIBE 2005: 19-26
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