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ORCIDErik Bongcam-Rudloff
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- affiliation: Swedish University of Agricultural Sciences, Uppsala, Sweden
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Journal Articles
- 2021
[j13]Renaud Van Damme
, Martin Hölzer, Adrian Viehweger, Bettina Müller, Erik Bongcam-Rudloff, Christian Brandt:
Metagenomics workflow for hybrid assembly, differential coverage binning, metatranscriptomics and pathway analysis (MUFFIN). PLoS Comput. Biol. 17(2) (2021)- 2019
- [j12]Hadrien Gourlé, Oskar Karlsson-Lindsjö, Juliette Hayer, Erik Bongcam-Rudloff:
Simulating Illumina metagenomic data with InSilicoSeq. Bioinform. 35(3): 521-522 (2019) - 2017
- [j11]Rafael Hernández-de-Diego, Etienne Pierre de Villiers, Tomas Klingström, Hadrien Gourlé, Ana Conesa, Erik Bongcam-Rudloff:
The eBioKit, a stand-alone educational platform for bioinformatics. PLoS Comput. Biol. 13(9) (2017) - 2015
- [j10]Manuel Corpas, Rafael C. Jiménez, Erik Bongcam-Rudloff, Aidan Budd, Michelle D. Brazas, Pedro L. Fernandes, Bruno A. Gaëta, Celia W. G. van Gelder, Eija Korpelainen, Fran Lewitter, Annette McGrath, Daniel MacLean, Patricia M. Palagi, Kristian Rother, Jan Taylor, Allegra Via, Mick Watson, Maria Victoria Schneider, Teresa K. Attwood:
The GOBLET training portal: a global repository of bioinformatics training materials, courses and trainers. Bioinform. 31(1): 140-142 (2015) - [j9]Teresa K. Attwood, Erik Bongcam-Rudloff, Michelle D. Brazas, Manuel Corpas, Pascale Gaudet, Fran Lewitter, Nicola J. Mulder, Patricia M. Palagi, Maria Victoria Schneider, Celia W. G. van Gelder:
GOBLET: The Global Organisation for Bioinformatics Learning, Education and Training. PLoS Comput. Biol. 11(4) (2015) - 2014
- [j8]Marco Masseroli, Barend Mons, Erik Bongcam-Rudloff, Stefano Ceri, Alexander E. Kel, François Rechenmann, Frédérique Lisacek, Paolo Romano:
Integrated Bio-Search: challenges and trends for the integration, search and comprehensive processing of biological information. BMC Bioinform. 15(S-1): S2 (2014) - [j7]David Gomez-Cabrero, Imad Abugessaisa, Dieter Maier, Andrew E. Teschendorff, Matthias Merkenschlager, Andreas Gisel, Esteban Ballestar, Erik Bongcam-Rudloff, Ana Conesa, Jesper Tegnér:
Data integration in the era of omics: current and future challenges. BMC Syst. Biol. 8(S-2): I1 (2014) - 2013
- [j6]Allegra Via, Thomas Blicher, Erik Bongcam-Rudloff, Michelle D. Brazas, Catherine Brooksbank, Aidan Budd, Javier De Las Rivas, Jacqueline Dreyer, Pedro L. Fernandes, Celia W. G. van Gelder, Joachim Jacob, Rafael C. Jiménez, Jane E. Loveland, Federico Morán, Nicola J. Mulder, Tommi H. Nyrönen, Kristian Rother, Maria Victoria Schneider, Teresa K. Attwood:
Best practices in bioinformatics training for life scientists. Briefings Bioinform. 14(5): 528-537 (2013) - 2010
- [j5]Damian Smedley, Paul N. Schofield, Chao-Kung Chen, Vassilis Aidinis, Crysanthi Ainali, Jonathan B. L. Bard, Rudi Balling, Ewan Birney, Andrew Blake, Erik Bongcam-Rudloff, Anthony J. Brookes, Gianni Cesareni, Christina Chandras, Janan T. Eppig, Paul Flicek, Georgios V. Gkoutos, Simon Greenaway, Michael Gruenberger, Jean-Karim Hériché, Andrew Lyall, Ann-Marie Mallon, Dawn Muddyman, Florian Reisinger, Martin Ringwald, Nadia A. Rosenthal, Klaus Schughart, Morris A. Swertz, Gudmundur A. Thorisson, Michael Zouberakis, John M. Hancock:
Finding and sharing: new approaches to registries of databases and services for the biomedical sciences. Database J. Biol. Databases Curation 2010 (2010) - [j4]Steve Pettifer, Jon C. Ison, Matús Kalas, Dave Thorne, Philip McDermott, Inge Jonassen, Ali Liaquat, José María Fernández, Jose Manuel Rodriguez, David G. Pisano, Christophe Blanchet, Mahmut Uludag, Peter M. Rice, Edita Bartaseviciute, Kristoffer Rapacki, Maarten L. Hekkelman, Olivier Sand, Heinz Stockinger, Andrew B. Clegg, Erik Bongcam-Rudloff, Jean Salzemann, Vincent Breton, Teresa K. Attwood, Graham Cameron, Gert Vriend:
The EMBRACE web service collection. Nucleic Acids Res. 38(Web-Server-Issue): 683-688 (2010) - 2009
- [j3]Alvaro Martinez Barrio, Erik Lagercrantz, Göran O. Sperber, Jonas Blomberg, Erik Bongcam-Rudloff:
Annotation and visualization of endogenous retroviral sequences using the Distributed Annotation System (DAS) and eBioX. BMC Bioinform. 10(S-6) (2009) - [j2]Domenica D'Elia, Andreas Gisel, Nils-Einar Eriksson, Sophia Kossida, Kimmo Mattila, Lubos Klucar, Erik Bongcam-Rudloff:
The 20th anniversary of EMBnet: 20 years of bioinformatics for the Life Sciences community. BMC Bioinform. 10(S-6) (2009) - 2007
- [j1]Alvaro Martinez Barrio, Daniel Soeria-Atmadja, Anders Nistér, Mats G. Gustafsson, Ulf Hammerling, Erik Bongcam-Rudloff:
EVALLER: a web server for in silico assessment of potential protein allergenicity. Nucleic Acids Res. 35(Web-Server-Issue): 694-700 (2007)
Conference and Workshop Papers
- 2018
- [c2]Susanne Hollmann, Teresa K. Attwood, Erik Bongcam-Rudloff, Deborah Duca, Domenica D'Elia, Christoph Endrullat, Marcus Frohme, Katrin Messerschmidt, Babette Regierer:
Standardization and Quality Assurance in Life-Science Research - Crucially Needed or Unnecessary and Annoying Regulation? ICT Innovations 2018: 13-20 - 2008
- [c1]Erik Bongcam-Rudloff:
"Biobanks, biomolecular resources and bioinformatics for health care and medical research in Europe". BIBE 2008: 1
Informal and Other Publications
- 2020
- [i1]Susanne Hollmann, Andreas Kremer, Spela Baebler, Christophe Trefois, Kristina Gruden, Witold R. Rudnicki, Weida Tong, Aleksandra Gruca, Erik Bongcam-Rudloff, Chris T. A. Evelo, Alina S. Nechyporenko, Marcus Frohme, David Safránek, Babette Regierer, Domenica D'Elia:
The need for standardisation in life science research - an approach to excellence and trust. F1000Research 9: 1398 (2020)
Coauthor Index
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