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ORCIDJari Björne
Person information
- affiliation: University of Turku, Finland
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2020 – today
- 2023
[c18]Samuli Laato
, Benedikt Morschheuser, Juho Hamari, Jari Björne:
AI-Assisted Learning with ChatGPT and Large Language Models: Implications for Higher Education. ICALT 2023: 226-230- 2022
- [j13]Kai Hakala, Suwisa Kaewphan, Jari Björne, Farrokh Mehryary, Hans Moen, Martti Tolvanen, Tapio Salakoski, Filip Ginter:
Neural Network and Random Forest Models in Protein Function Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 19(3): 1772-1781 (2022) - [c17]Samuli Laato, Mika Murtojärvi, Antti Airola, Jari Björne:
Striving for platform independence in the e-learning landscape: a study on a flexible exercise creation system. ICALT 2022: 46-48 - 2021
- [j12]Olga Majewska, Charlotte Collins, Simon Baker, Jari Björne, Susan Windisch Brown, Anna Korhonen, Martha Palmer:
BioVerbNet: a large semantic-syntactic classification of verbs in biomedicine. J. Biomed. Semant. 12(1): 12 (2021) - [c16]Hans Moen, Dari AlHuwail, Jari Björne, Lori Block, Sven Celin, Eunjoo Jeon, Karl Kreiner, James Mitchell, Gabriela Ozegovic, Charlene Esteban Ronquillo, Lydia Sequeira, Jude L. Tayaben, Maxim Topaz, Sai Pavan Kumar Veeranki, Laura-Maria Peltonen:
Towards Automated Screening of Literature on Artificial Intelligence in Nursing. MedInfo 2021: 637-640 - 2020
- [c15]Samuli Laato, Henna Vilppu, Juho Heimonen, Antti Hakkala, Jari Björne, Ali Farooq, Tapio Salakoski, Antti Airola:
Propagating AI Knowledge Across University Disciplines- The Design of A Multidisciplinary AI Study Module. FIE 2020: 1-9
2010 – 2019
- 2018
- [j11]Farrokh Mehryary, Jari Björne, Tapio Salakoski, Filip Ginter:
Potent pairing: ensemble of long short-term memory networks and support vector machine for chemical-protein relation extraction. Database J. Biol. Databases Curation 2018: bay120 (2018) - [c14]Jari Björne, Tapio Salakoski:
Biomedical Event Extraction Using Convolutional Neural Networks and Dependency Parsing. BioNLP 2018: 98-108 - [c13]Murhaf Fares, Stephan Oepen, Lilja Øvrelid, Jari Björne, Richard Johansson:
The 2018 Shared Task on Extrinsic Parser Evaluation: On the Downstream Utility of English Universal Dependency Parsers. CoNLL Shared Task (2) 2018: 22-33 - 2017
- [c12]Farrokh Mehryary, Kai Hakala, Suwisa Kaewphan, Jari Björne, Tapio Salakoski, Filip Ginter:
End-to-End System for Bacteria Habitat Extraction. BioNLP 2017: 80-90 - 2016
- [c11]Farrokh Mehryary, Jari Björne, Sampo Pyysalo, Tapio Salakoski, Filip Ginter:
Deep Learning with Minimal Training Data: TurkuNLP Entry in the BioNLP Shared Task 2016. BioNLP (Shared Task) 2016: 73-81 - [c10]Jari Björne, Tapio Salakoski:
UTU at SemEval-2016 Task 10: Binary Classification for Expression Detection (BCED). SemEval@NAACL-HLT 2016: 925-930 - 2015
- [j10]Jari Björne, Tapio Salakoski:
TEES 2.2: Biomedical Event Extraction for Diverse Corpora. BMC Bioinform. 16(S16): S4 (2015) - 2013
- [c9]Jari Björne, Tapio Salakoski:
TEES 2.1: Automated Annotation Scheme Learning in the BioNLP 2013 Shared Task. BioNLP@ACL (Shared Task) 2013: 16-25 - [c8]Jari Björne, Suwisa Kaewphan, Tapio Salakoski:
UTurku: Drug Named Entity Recognition and Drug-Drug Interaction Extraction Using SVM Classification and Domain Knowledge. SemEval@NAACL-HLT 2013: 651-659 - 2012
- [j9]Jari Björne, Filip Ginter, Tapio Salakoski:
University of Turku in the BioNLP'11 Shared Task. BMC Bioinform. 13(S-11): S4 (2012) - [j8]Sofie Van Landeghem, Jari Björne, Thomas Abeel, Bernard De Baets, Tapio Salakoski, Yves Van de Peer:
Semantically linking molecular entities in literature through entity relationships. BMC Bioinform. 13(S-11): S6 (2012) - [c7]Jari Björne, Sofie Van Landeghem, Sampo Pyysalo, Tomoko Ohta, Filip Ginter, Yves Van de Peer, Sophia Ananiadou, Tapio Salakoski:
PubMed-Scale Event Extraction for Post-Translational Modifications, Epigenetics and Protein Structural Relations. BioNLP@HLT-NAACL 2012: 82-90 - 2011
- [j7]Yoshinobu Kano, Jari Björne, Filip Ginter, Tapio Salakoski, Ekaterina Buyko, Udo Hahn, K. Bretonnel Cohen, Karin Verspoor, Christophe Roeder, Lawrence E. Hunter, Halil Kilicoglu, Sabine Bergler, Sofie Van Landeghem, Thomas Van Parys, Yves Van de Peer, Makoto Miwa, Sophia Ananiadou, Mariana L. Neves, Alberto D. Pascual-Montano, Arzucan Özgür, Dragomir R. Radev, Sebastian Riedel, Rune Sætre, Hong-Woo Chun, Jin-Dong Kim, Sampo Pyysalo, Tomoko Ohta, Jun'ichi Tsujii:
U-Compare bio-event meta-service: compatible BioNLP event extraction services. BMC Bioinform. 12: 481 (2011) - [j6]Jari Björne, Juho Heimonen, Filip Ginter, Antti Airola, Tapio Pahikkala, Tapio Salakoski:
Extracting Contextualized Complex Biological Events with Rich Graph-Based Feature Sets. Comput. Intell. 27(4): 541-557 (2011) - [c6]Jari Björne, Tapio Salakoski:
Generalizing Biomedical Event Extraction. BioNLP@ACL (Shared Task) 2011: 183-191 - 2010
- [j5]Jari Björne, Filip Ginter, Sampo Pyysalo, Jun'ichi Tsujii, Tapio Salakoski:
Complex event extraction at PubMed scale. Bioinform. 26(12): 382-390 (2010) - [j4]Filip Ginter, Jari Björne, Sampo Pyysalo:
Event extraction on PubMed scale. BMC Bioinform. 11(S-5): O2 (2010) - [c5]Jari Björne, Filip Ginter, Sampo Pyysalo, Jun'ichi Tsujii, Tapio Salakoski:
Scaling up Biomedical Event Extraction to the Entire PubMed. BioNLP@ACL 2010: 28-36 - [c4]Juho Heimonen, Jari Björne, Tapio Salakoski:
Reconstruction of Semantic Relationships from Their Projections in Biomolecular Domain. BioNLP@ACL 2010: 108-116
2000 – 2009
- 2009
- [c3]Jari Björne, Juho Heimonen, Filip Ginter, Antti Airola, Tapio Pahikkala, Tapio Salakoski:
Extracting Complex Biological Events with Rich Graph-Based Feature Sets. BioNLP@HLT-NAACL (Shared Task) 2009: 10-18 - [c2]Jari Björne, Filip Ginter, Juho Heimonen, Sampo Pyysalo, Tapio Salakoski:
Learning to Extract Biological Event and Relation Graphs. NODALIDA 2009: 18-25 - 2008
- [j3]Antti Airola, Sampo Pyysalo, Jari Björne, Tapio Pahikkala, Filip Ginter, Tapio Salakoski:
All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning. BMC Bioinform. 9(S-11) (2008) - [j2]Sampo Pyysalo, Antti Airola, Juho Heimonen, Jari Björne, Filip Ginter, Tapio Salakoski:
Comparative analysis of five protein-protein interaction corpora. BMC Bioinform. 9(S-3) (2008) - [c1]Antti Airola, Sampo Pyysalo, Jari Björne, Tapio Pahikkala, Filip Ginter, Tapio Salakoski:
A Graph Kernel for Protein-Protein Interaction Extraction. BioNLP 2008: 1-9 - 2007
- [j1]Sampo Pyysalo, Filip Ginter, Juho Heimonen, Jari Björne, Jorma Boberg, Jouni Järvinen, Tapio Salakoski:
BioInfer: a corpus for information extraction in the biomedical domain. BMC Bioinform. 8 (2007)
Coauthor Index
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