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Osamu Maruyama
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2020 – today
- 2023
- [c40]Tsukasa Koga
, Osamu Maruyama
:
CBOEP: Generating negative enhancer-promoter interactions to train classifiers. BCB 2023: 27:1-27:6 - 2022
- [j15]Osamu Maruyama, Yinuo Li, Hiroki Narita, Hidehiro Toh
, Wan Kin Au Yeung
, Hiroyuki Sasaki:
CMIC: predicting DNA methylation inheritance of CpG islands with embedding vectors of variable-length k-mers. BMC Bioinform. 23(1): 371 (2022) - 2021
- [j14]Wan Kin Au Yeung
, Osamu Maruyama, Hiroyuki Sasaki:
A convolutional neural network-based regression model to infer the epigenetic crosstalk responsible for CG methylation patterns. BMC Bioinform. 22(1): 341 (2021)
2010 – 2019
- 2019
- [c39]Osamu Maruyama, Fumiko Matsuzaki
:
DegSampler3: Pairwise Dependency Model in Degradation Motif Site Prediction of Substrate Protein Sequences. BIBE 2019: 11-17 - 2018
- [c38]Osamu Maruyama, Fumiko Matsuzaki
:
DegSampler: Collapsed Gibbs Sampler for Detecting E3 Binding Sites. BIBE 2018: 1-9 - [c37]Takuro Maruyama, Tomotaka Murashige, Daisuke Sakota, Osamu Maruyama, Wataru Hijikata:
Development of an Intelligent Ventricular Assist Device with a Function of Sensorless Thrombus Detection. EMBC 2018: 4516-4519 - 2017
- [j13]Osamu Maruyama, Yuki Kuwahara:
RocSampler: regularizing overlapping protein complexes in protein-protein interaction networks. BMC Bioinform. 18(15): 51-62 (2017) - 2016
- [c36]Koki Kawakami, Daisuke Sakota, Ryo Kosaka, Masahiro Nishida, Yasuo Kawaguchi, Osamu Maruyama:
Reaction mechanism of blood coagulation factors in shear flow field. EMBC 2016: 4309-4312 - [c35]Osamu Maruyama, Yuki Kuwahara:
RocSampler: Regularizing overlapping protein complexes in protein-protein interaction networks. ICCABS 2016: 1 - 2015
- [c34]Osamu Maruyama, Limsoon Wong
:
Regularizing predicted complexes by mutually exclusive protein-protein interactions. ASONAM 2015: 1068-1075 - [c33]Tomotaka Murashige, Ryo Kosaka, Daisuke Sakota, Masahiro Nishida, Yasuo Kawaguchi, Takashi Yamane, Osamu Maruyama:
Evaluation of erythrocyte flow at a bearing gap in a hydrodynamically levitated centrifugal blood pump. EMBC 2015: 270-273 - [c32]Ryo Kosaka, Fumihiko Yoshida, Masahiro Nishida, Osamu Maruyama, Yasuo Kawaguchi, Takashi Yamane:
Bearing gap adjustment for improvement of levitation performance in a hydrodynamically levitated centrifugal blood pump. EMBC 2015: 3295-3298 - [c31]Daisuke Sakota, Eiki Nagaoka, Osamu Maruyama:
Hyperspectral imaging of vascular anastomosis associated with blood flow and hemoglobin concentration. EMBC 2015: 4246-4249 - [c30]Daisuke Sakota, Ryo Kosaka, Masahiro Nishida, Osamu Maruyama:
Development of a photon-cell interactive monte carlo simulation for non-invasive measurement of blood glucose level by Raman spectroscopy. EMBC 2015: 6409-6412 - 2014
- [j12]Peiying Ruan, Morihiro Hayashida, Osamu Maruyama, Tatsuya Akutsu
:
Prediction of heterotrimeric protein complexes by two-phase learning using neighboring kernels. BMC Bioinform. 15(S-2): S6 (2014) - [j11]Chern Han Yong, Osamu Maruyama, Limsoon Wong
:
Discovery of small protein complexes from PPI networks with size-specific supervised weighting. BMC Syst. Biol. 8(S-5): S3 (2014) - [j10]So Kobiki, Osamu Maruyama:
ReSAPP: Predicting overlapping protein complexes by merging multiple-sampled partitions of proteins. J. Bioinform. Comput. Biol. 12(6) (2014) - [c29]Osamu Maruyama, Shota Shikita:
A scale-free structure prior for Bayesian inference of Gaussian graphical models. BIBM 2014: 131-138 - 2013
- [j9]Osamu Maruyama:
Heterodimeric protein complex identification by naïve Bayes classifiers. BMC Bioinform. 14: 347 (2013) - [j8]Chasanah Kusumastuti Widita, Osamu Maruyama:
PPSampler2: Predicting protein complexes more accurately and efficiently by sampling. BMC Syst. Biol. 7(S-6): S14 (2013) - [j7]Yuta Taniguchi, Yasuhiro Yamada, Osamu Maruyama, Satoru Kuhara, Daisuke Ikeda:
The Purity Measure for genomic Regions leads to Horizontally Transferred genes. J. Bioinform. Comput. Biol. 11(6) (2013) - [c28]Daisuke Ikeda, Osamu Maruyama, Satoru Kuhara:
Infrequent, Unexpected, and Contrast Pattern Discovery from Bacterial Genomes by Genome-wide Comparative Analysis. BIOINFORMATICS 2013: 308-311 - [c27]Tomotaka Murashige, Ryo Kosaka, Masahiro Nishida, Osamu Maruyama, Takashi Yamane, Katsuyuki Kuwana, Yasuo Kawaguchi:
Fluid dynamic design for low hemolysis in a hydrodynamically levitated centrifugal blood pump. EMBC 2013: 2732-2735 - [c26]Masahiro Nishida, Kento Nakayama, Ryo Kosaka, Osamu Maruyama, Yasuo Kawaguchi, Katsuyuki Kuwana, Takashi Yamane:
Effect of impeller flow path on pump performance and impeller stability of the monopivot circulatory pump. EMBC 2013: 2736-2739 - [c25]Achyut Sapkota, Yuta Asakura, Osamu Maruyama, Ryo Kosaka, Takashi Yamane, Masahiro Takei
:
Risk analysis and detection of thrombosis by measurement of electrical resistivity of blood. EMBC 2013: 4086-4089 - [c24]Ryo Kosaka, Kyohei Fukuda, Masahiro Nishida, Osamu Maruyama, Takashi Yamane:
Noninvasive blood-flow meter using a curved cannula with zero compensation for an axial flow blood pump. EMBC 2013: 4090-4093 - [c23]Daisuke Sakota, Yuki Kani, Ryo Kosaka, Masahiro Nishida, Osamu Maruyama:
Simultaneous determination of hemolysis and hematocrit in extracorporeal circulation by plasma surface reflectance spectroscopy. EMBC 2013: 6764-6767 - 2011
- [c22]Osamu Maruyama:
Heterodimeric protein complex identification. BCB 2011: 499-501 - [c21]Ryo Kosaka, Toru Yada, Masahiro Nishida, Osamu Maruyama, Takashi Yamane:
Improvement of hemocompatibility for hydrodynamic levitation centrifugal pump by optimizing step bearings. EMBC 2011: 1331-1334 - [c20]Ryo Kosaka, Masahiro Nishida, Osamu Maruyama, Takashi Yamane:
Noninvasive miniaturized mass-flow meter using a curved cannula for implantable axial flow blood pump. EMBC 2011: 1343-1346 - 2010
- [c19]Osamu Maruyama, Ayaka Chihara:
NWE: Node-weighted expansion for protein complex prediction using random walk distances. BIBM 2010: 590-594 - [c18]Osamu Maruyama, Ayaka Chihara:
NWE: Node-weighted expansion for protein complex prediction using random walk distances. BIBM Workshops 2010: 825-826
2000 – 2009
- 2008
- [c17]Osamu Maruyama, Hideki Hirakawa, Takao Iwayanagi, Yoshiko Ishida, Shizu Takeda, Jun Otomo, Satoru Kuhara:
Evaluating Protein Sequence Signatures Inferred from Protein-Protein Interaction Data by Gene Ontology Annotations. BIBM 2008: 417-420 - 2005
- [j6]Osamu Maruyama, Akiko Matsuda, Satoru Kuhara:
Reconstructing phylogenetic trees of prokaryote genomes by randomly sampling oligopeptides. Int. J. Bioinform. Res. Appl. 1(4): 429-446 (2005) - [c16]Osamu Maruyama, Akiko Matsuda, Satoru Kuhara:
Reconstructing Phylogenetic Trees of Prokaryote Genomes by Randomly Sampling Oligopeptides. International Conference on Computational Science (2) 2005: 911-918 - 2004
- [c15]Hiroki Sakai, Osamu Maruyama:
Extensive Search for Discriminative Features of Alternative Splicing. Pacific Symposium on Biocomputing 2004: 54-65 - [c14]Daichi Shigemizu, Osamu Maruyama:
Searching for Regulatory Elements of Alternative Splicing Events Using Phylogenetic Footprinting. WABI 2004: 147-158 - 2003
- [j5]Tatsuya Akutsu
, Satoru Kuhara, Osamu Maruyama, Satoru Miyano:
Identification of genetic networks by strategic gene disruptions and gene overexpressions under a boolean model. Theor. Comput. Sci. 298(1): 235-251 (2003) - [c13]Daisuke Shinozaki, Tatsuya Akutsu, Osamu Maruyama:
Finding optimal degenerate patterns in DNA sequences. ECCB 2003: 206-214 - 2002
- [j4]Hideo Bannai, Yoshinori Tamada, Osamu Maruyama, Kenta Nakai, Satoru Miyano
:
Extensive feature detection of N-terminal protein sorting signals. Bioinform. 18(2): 298-305 (2002) - [j3]Osamu Maruyama, Hideo Bannai, Yoshinori Tamada
, Satoru Kuhara, Satoru Miyano:
Fast algorithm for extracting multiple unordered short motifs using bit operations. Inf. Sci. 146(1-4): 115-126 (2002) - [c12]Osamu Maruyama, Takayoshi Shoudai, Satoru Miyano:
Toward Drawing an Atlas of Hypothesis Classes: Approximating a Hypothesis via Another Hypothesis Model. Discovery Science 2002: 220-232 - [c11]Yoshinori Tamada
, Hideo Bannai, Osamu Maruyama, Satoru Miyano:
Foundations of Designing Computational Knowledge Discovery Processes. Progress in Discovery Science 2002: 459-470 - [c10]Osamu Maruyama, Satoru Kuhara, Hideo Bannai, Satoru Miyano, Yoshinori Tamada:
Fast Algorithm for Extracting Multiple Unordered Short Motifs Using Bit Operations. JCIS 2002: 1180-1185 - 2001
- [j2]Hideo Bannai, Yoshinori Tamada, Osamu Maruyama, Satoru Miyano:
HypothesisCreator: Concepts for Accelerating the Computational Knowledge Discovery Process. Electron. Trans. Artif. Intell. 5(B): 73-83 (2001) - [c9]Hideo Bannai, Yoshinori Tamada
, Osamu Maruyama, Satoru Miyano:
VML: A View Modeling Language for Computational Knowledge Discovery. Discovery Science 2001: 30-44 - [c8]Osamu Maruyama, Takayoshi Shoudai, Emiko Furuichi, Satoru Kuhara, Satoru Miyano:
Learning Conformation Rules. Discovery Science 2001: 243-257 - [c7]Hideo Bannai, Yoshinori Tamada, Osamu Maruyama, Kenta Nakai, Satoru Miyano:
Views: Fundamental Building Blocks in the Process of Knowledge Discovery. FLAIRS 2001: 233-238
1990 – 1999
- 1999
- [c6]Osamu Maruyama, Tomoyuki Uchida, Kim Lan Sim, Satoru Miyano:
Designing Views in HypothesisCreator: System for Assisting in Discovery. Discovery Science 1999: 115-127 - 1998
- [c5]Osamu Maruyama, Tomoyuki Uchida, Takayoshi Shoudai, Satoru Miyano:
Toward Genomic Hypothesis Creator: View Designer for Discovery. Discovery Science 1998: 105-116 - [c4]Tatsuya Akutsu, Satoru Kuhara, Osamu Maruyama, Satoru Miyano:
Identification of Gene Regulatory Networks by Strategic Gene Disruptions and Gene Overexpressions. SODA 1998: 695-702 - 1996
- [j1]Osamu Maruyama, Satoru Miyano:
Inferring a Tree from Walks. Theor. Comput. Sci. 161(1&2): 289-300 (1996) - [c3]Erika Tateishi, Osamu Maruyama, Satoru Miyano:
Extracting Best Consensus Motifs from Positive and Negative Examples. STACS 1996: 219-230 - 1995
- [c2]Osamu Maruyama, Satoru Miyano:
Graph Inference from a Walk for TRees of Bounded Degree 3 is NP-Complete. MFCS 1995: 257-266 - 1992
- [c1]Osamu Maruyama, Satoru Miyano:
Inferring a Tree from Walks. MFCS 1992: 383-391
Coauthor Index
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