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Andre L. A. J. Dekker – André L. A. J. Dekker
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2020 – today
- 2025
[j28]Swier Garst, Andre Dekker, Marcel J. T. Reinders:
A comprehensive experimental comparison between federated and centralized learning. Database J. Biol. Databases Curation 2025 (2025)- [j27]Weixing Li, Xipeng Pan, Zhen Zhang, Guangyao Wu, Guanchao Ye, Leonard Wee, Andre Dekker, Chu Han, Lei Shi, Zaiyi Liu, Zhenbing Liu, Zhenwei Shi:
Data-efficient federated semi-supervised learning framework via pseudo supervision refinement strategy for lung tumor segmentation. Biomed. Signal Process. Control. 107: 107793 (2025) - [j26]Zhenbing Liu
, Weixing Li, Yanfen Cui, Xin Chen, Xipeng Pan, Guanchao Ye, Guangyao Wu, Yongde Liao, Leroy Volmer, Leonard Wee, Andre Dekker, Chu Han, Zaiyi Liu, Zhenwei Shi:
Label-efficient transformer-based framework with self-supervised strategies for heterogeneous lung tumor segmentation. Expert Syst. Appl. 269: 126364 (2025) - 2024
- [j25]Zhihe Zhao, Siyao Du, Zeyan Xu, Zhi Yin, Xiaomei Huang, Xin Huang, Chinting Wong, Yanting Liang, Jing Shen, Jianlin Wu, Jinrong Qu, Lina Zhang, Yanfen Cui, Ying Wang, Leonard Wee, Andre Dekker, Chu Han, Zaiyi Liu, Zhenwei Shi, Changhong Liang:
SwinHR: Hemodynamic-powered hierarchical vision transformer for breast tumor segmentation. Comput. Biol. Medicine 169: 107939 (2024) - [j24]Pedro Mateus, Justine E. F. Moonen, Magdalena Beran, Eva Jaarsma, Sophie M. van der Landen, Joost Heuvelink, Mahlet A. Birhanu, Alexander G. J. Harms, Esther Bron, Frank J. Wolters, Davy Cats, Hailiang Mei, Julie Oomens, Willemijn Jansen, Miranda T. Schram, Andre Dekker, Iñigo Bermejo:
Data harmonization and federated learning for multi-cohort dementia research using the OMOP common data model: A Netherlands consortium of dementia cohorts case study. J. Biomed. Informatics 155: 104661 (2024) - [j23]Ananya Choudhury, Esther R. C. Janssen, Bart C. Bongers, Nico L. U. van Meeteren, Andre Dekker, Johan van Soest:
Colorectal cancer health and care quality indicators in a federated setting using the Personal Health Train. BMC Medical Informatics Decis. Mak. 24(1): 121 (2024) - [j22]Esther R. C. Janssen, Ilona M. Punt, Johan van Soest, Yvonne F. Heerkens, Hillegonda A. Stallinga, Huib ten Napel, Lodewijk W. van Rhijn, Barend Mons, Andre Dekker, Paul C. Willems, Nico L. U. van Meeteren:
Operationalizing and digitizing person-centered daily functioning: a case for functionomics. BMC Medical Informatics Decis. Mak. 24(1): 184 (2024) - [i15]Florian Van Daalen, Lianne Ippel, Andre Dekker, Iñigo Bermejo:
Federated Bayesian Network Ensembles. CoRR abs/2402.12142 (2024) - [i14]Pedro Mateus, Swier Garst, Jing Yu, Davy Cats, Alexander G. J. Harms, Mahlet A. Birhanu, Marian Beekman, P. Eline Slagboom, Marcel J. T. Reinders, Jeroen van der Grond, Andre Dekker, Jacobus F. A. Jansen, Magdalena Beran, Miranda T. Schram, Pieter Jelle Visser, Justine E. F. Moonen, Mohsen Ghanbari, Gennady Roshchupkin, Dina Vojinovic, Iñigo Bermejo, Hailiang Mei, Esther E. Bron:
MRI-based and metabolomics-based age scores act synergetically for mortality prediction shown by multi-cohort federated learning. CoRR abs/2409.01235 (2024) - [i13]Florian Van Daalen, Lianne Ippel, Andre Dekker, Iñigo Bermejo:
A Response to: A Note on "Privacy Preserving n-Party Scalar Product Protocol". CoRR abs/2409.10057 (2024) - 2023
- [j21]Ashish Kumar Jha, Sneha Mithun, Umeshkumar B. Sherkhane, Vinay Jaiswar, Biche Osong, Nilendu Purandare, Sadhana Kannan, Kumar Prabhash, Sudeep Gupta, Ben G. L. Vanneste, Venkatesh Rangarajan, Andre Dekker, Leonard Wee:
Systematic review and meta-analysis of prediction models used in cervical cancer. Artif. Intell. Medicine 139: 102549 (2023) - [j20]Junhua Chen, Chong Zhang, Leonard Wee, Andre Dekker, Iñigo Bermejo:
Are all shortcuts in encoder-decoder networks beneficial for CT denoising? Comput. methods Biomech. Biomed. Eng. Imaging Vis. 11(1): 59-66 (2023) - [j19]Sneha Mithun, Ashish Kumar Jha, Umeshkumar B. Sherkhane, Vinay Jaiswar, Nilendu Purandare, Andre Dekker, Sander Puts, Iñigo Bermejo, Venkatesh Rangarajan, Catharina M. L. Zegers, Leonard Wee:
Clinical Concept-Based Radiology Reports Classification Pipeline for Lung Carcinoma. J. Digit. Imaging 36(3): 812-826 (2023) - [j18]Ashish Kumar Jha, Umeshkumar B. Sherkhane, Sneha Mithun, Vinay Jaiswar, Nilendu Purandare, Kumar Prabhash, Leonard Wee, Venkatesh Rangarajan, Andre Dekker:
External Validation of Robust Radiomic Signature to Predict 2-Year Overall Survival in Non-Small-Cell Lung Cancer. J. Digit. Imaging 36(6): 2519-2531 (2023) - [j17]Suraj Pai, Ibrahim Hadzic, Chinmay Rao, Ivan Zhovannik, Andre Dekker, Alberto Traverso, Stylianos Asteriadis, Enrique Hortal:
Frequency-Domain-Based Structure Losses for CycleGAN-Based Cone-Beam Computed Tomography Translation. Sensors 23(3): 1089 (2023) - [j16]Ye Zhang, Zhixiang Wang, Zhen Zhang, Junzhuo Liu, Ying Feng, Leonard Wee, Andre Dekker, Qiaosong Chen, Alberto Traverso:
GAN-based one dimensional medical data augmentation. Soft Comput. 27(15): 10481-10491 (2023) - [j15]Florian Van Daalen, Lianne Ippel, Andre Dekker, Iñigo Bermejo:
Privacy Preserving $n$n-Party Scalar Product Protocol. IEEE Trans. Parallel Distributed Syst. 34(4): 1060-1066 (2023) - [c26]Florian Van Daalen, Lianne Ippel, Andre Dekker, Iñigo Bermejo:
Federated Bayesian Network Ensembles. FMEC 2023: 22-33 - [c25]Varsha Gouthamchand, Ananya Choudhury, Frank Hoebers, Frederik Wesseling, Mattea Welch, Sejin Kim, Benjamin Haibe-Kains, Joanna Kazmierska, Andre Dekker, Johan van Soest, Leonard Wee:
Privacy-Preserving Dashboard for F.A.I.R Head and Neck Cancer data supporting multi-centered collaborations. SWAT4HCLS 2023: 11-21 - 2022
- [j14]Junzhuo Liu, Zhixiang Wang, Ye Zhang, Alberto Traverso, Andre Dekker, Zhen Zhang, Qiaosong Chen:
CycleGAN Clinical Image Augmentation Based on Mask Self-Attention Mechanism. IEEE Access 10: 105942-105953 (2022) - [c24]Mark Phillips, Andre Dekker, Charles Mayo, Peter Gabriel, Jonathan P. Bona:
Building a Radiation Therapy Ontology. ICBO 2022: 1 - [i12]Parnian Afshar, Arash Mohammadi, Konstantinos N. Plataniotis, Keyvan Farahani, Justin S. Kirby, Anastasia Oikonomou, Amir Asif, Leonard Wee, Andre Dekker, Xin Wu, Mohammad Ariful Haque, Shahruk Hossain, Md. Kamrul Hasan, Uday Kamal, Winston H. Hsu, Jhih-Yuan Lin, M. Sohel Rahman, Nabil Ibtehaz, Sh. M. Amir Foisol, Kin-Man Lam, Zhong Guang, Runze Zhang, Sumohana S. Channappayya, Shashank Gupta, Chander Dev:
Lung-Originated Tumor Segmentation from Computed Tomography Scan (LOTUS) Benchmark. CoRR abs/2201.00458 (2022) - [i11]Peter M. A. van Ooijen, Erfan Darzidehkalani, Andre Dekker:
AI Technical Considerations: Data Storage, Cloud usage and AI Pipeline. CoRR abs/2201.08356 (2022) - [i10]Hajar Hasannejadasl, Cheryl Roumen, Yolba Smit, Andre Dekker, Rianne Fijten:
Health literacy in e-oncology care: challenges and strategies. CoRR abs/2201.08718 (2022) - [i9]Florian Van Daalen, Lianne Ippel, Andre Dekker, Iñigo Bermejo:
VertiBayes: Learning Bayesian network parameters from vertically partitioned data with missing values. CoRR abs/2210.17228 (2022) - 2021
- [j13]Chang Sun, Lianne Ippel, Andre Dekker, Michel Dumontier, Johan van Soest:
A systematic review on privacy-preserving distributed data mining. Data Sci. 4(2): 121-150 (2021) - [j12]Leanne L. G. C. Ackermans, Leroy Volmer, Leonard Wee, Ralph Brecheisen, Patricia Sánchez-González, Alexander P. Seiffert, Enrique J. Gómez, Andre Dekker, Jan A. Ten Bosch, Steven M. W. Olde Damink, Taco J. Blokhuis:
Deep Learning Automated Segmentation for Muscle and Adipose Tissue from Abdominal Computed Tomography in Polytrauma Patients. Sensors 21(6): 2083 (2021) - [i8]Junhua Chen, Haiyan Zeng, Chong Zhang, Zhenwei Shi, Andre Dekker, Leonard Wee, Iñigo Bermejo:
Lung Cancer Diagnosis Using Deep Attention Based on Multiple Instance Learning and Radiomics. CoRR abs/2104.14655 (2021) - [i7]Junhua Chen, Chong Zhang, Alberto Traverso, Ivan Zhovannik, Andre Dekker, Leonard Wee, Iñigo Bermejo:
Generative Models Improve Radiomics Reproducibility in Low Dose CTs: A Simulation Study. CoRR abs/2104.15050 (2021) - [i6]Matthijs Sloep, Petros Kalendralis, Ananya Choudhury, Lerau Seyben, Jasper Snel, Nibin Moni George, Martijn Veening, Johannes A. Langendijk, Andre Dekker, Johan van Soest, Rianne Fijten:
A Knowledge graph representation of baseline characteristics for the Dutch proton therapy research registry. CoRR abs/2107.02482 (2021) - [i5]Junhua Chen, Iñigo Bermejo, Andre Dekker, Leonard Wee:
Generative Models Improve Radiomics Performance in Different Tasks and Different Datasets: An Experimental Study. CoRR abs/2109.02252 (2021) - [i4]Hajar Hasannejadasl, Cheryl Roumen, Henk van der Poel, Ben G. L. Vanneste, Joep G. van Roermund, Katja Aben, Petros Kalendralis, Biche Osong, Lambertus Kiemeney, Inge M. van Oort, Renée Verwey, Laura Hochstenbach, Esther Bloemen-van Gurp, Andre Dekker, Rianne Fijten:
Predicting erectile dysfunction after treatment for localized prostate cancer. CoRR abs/2110.00615 (2021) - [i3]Florian Van Daalen, Iñigo Bermejo, Lianne Ippel, Andre Dekker:
Privacy preserving n-party scalar product protocol. CoRR abs/2112.09436 (2021) - 2020
- [j11]Siva Teja Kakileti, Himanshu J. Madhu, Geetha Manjunath, Leonard Wee, Andre Dekker, Sudhakar Sampangi:
Personalized risk prediction for breast cancer pre-screening using artificial intelligence and thermal radiomics. Artif. Intell. Medicine 105: 101854 (2020) - [j10]Oya Beyan, Ananya Choudhury, Johan van Soest, Oliver Kohlbacher, Lukas Zimmermann, Holger Stenzhorn, Md. Rezaul Karim, Michel Dumontier, Stefan Decker, Luiz Olavo Bonino da Silva Santos, Andre Dekker:
Distributed Analytics on Sensitive Medical Data: The Personal Health Train. Data Intell. 2(1-2): 96-107 (2020) - [j9]J. Martijn Nobel, Sander Puts, Frans C. H. Bakers, Simon G. F. Robben, André L. A. J. Dekker:
Natural Language Processing in Dutch Free Text Radiology Reports: Challenges in a Small Language Area Staging Pulmonary Oncology. J. Digit. Imaging 33(4): 1002-1008 (2020) - [c23]Ravindra Patil, Leonard Wee, Andre Dekker:
Auto Segmentation of Lung in Non-small Cell Lung Cancer Using Deep Convolution Neural Network. ICACDS 2020: 340-351 - [c22]Alberto Traverso, Ali Hosni-Abdalaty, Mohammad Hasan, Tony Tadic, Tirth Patel, Meredith Giuliani, John Kim, Jolie Ringash, John Cho, Scott V. Bratman, Andrew Bayley, John Waldron, Brian O'Sullivan, Jonathan C. Irish, Douglas Chepeha, John De Almeida, David Goldstein, David A. Jaffray, Leonard Wee, Andre Dekker, Andrew Hope:
Non-invasive prediction of lymph node risk in oral cavity cancer patients using a combination of supervised and unsupervised machine learning algorithms. Biomedical Applications in Molecular, Structural, and Functional Imaging 2020: 113172C - [c21]Chinmay Rao, Suraj Pai, Ibrahim Hadzic, Ivan Zhovannik, Dennis Bontempi, Andre Dekker, Jonas Teuwen, Alberto Traverso:
Oropharyngeal Tumour Segmentation Using Ensemble 3D PET-CT Fusion Networks for the HECKTOR Challenge. HECKTOR@MICCAI 2020: 65-77 - [c20]Anshu Ankolekar, Britt van der Heijden, Andre Dekker, Cheryl Roumen, Dirk De Ruysscher, Bart Reymen, Ruud Houben, Peter Fick, Sander Puts, Joeri Veugen, Adriana Berlanga, Cary Oberije, Rianne Fijten:
Implications of Clinicians' Attitudes Towards Clinical Decision Support Systems. MIE 2020: 1319-1320 - [c19]Ananya Choudhury, Johan van Soest, Stuti Nayak, Andre Dekker:
Personal Health Train on FHIR: A Privacy Preserving Federated Approach for Analyzing FAIR Data in Healthcare. MIND (1) 2020: 85-95 - [i2]Anshu Ankolekar, Ben G. L. Vanneste, Esther Bloemen-van Gurp, Joep G. van Roermund, Adriana Berlanga, Cheryl Roumen, Evert J. van Limbergen, Ludy Lutgens, Tom Marcelissen, Philippe Lambin, Andre Dekker, Rianne Fijten:
Nine Recommendations for Decision Aid Implementation from the Clinician Perspective. CoRR abs/2007.10797 (2020)
2010 – 2019
- 2019
- [j8]Roberto Gatta, Mauro Vallati, Nicola Dinapoli, Carlotta Masciocchi, Jacopo Lenkowicz, Davide Cusumano, Calogero Casà, Alessandra Farchione, Andrea Damiani, Johan van Soest, Andre Dekker, Vincenzo Valentini:
Towards a modular decision support system for radiomics: A case study on rectal cancer. Artif. Intell. Medicine 96: 145-153 (2019) - [j7]Maria Jacobs, Liesbeth J. Boersma, Rachelle Swart, Rob Mannens, Bart Reymen, Fred Körver, Frits van Merode, Andre Dekker:
Electronic Health Record implementation in a large academic radiotherapy department: Temporarily disruptions but long-term benefits. Int. J. Medical Informatics 129: 342-348 (2019) - [j6]Anshu Ankolekar, Ben G. L. Vanneste, Esther Bloemen-van Gurp, Joep G. van Roermund, Evert J. van Limbergen, Kees van de Beek, Tom Marcelissen, Victor Zambon, Matthias Oelke, Andre Dekker, Cheryl Roumen, Philippe Lambin, Adriana Berlanga, Rianne Fijten:
Development and validation of a patient decision aid for prostate Cancer therapy: from paternalistic towards participative shared decision making. BMC Medical Informatics Decis. Mak. 19(1): 130:1-130:11 (2019) - [j5]Bas Schipaanboord, Djamal Boukerroui, Devis Peressutti, Johan van Soest, Tim Lustberg, Timor Kadir, Andre Dekker, Wouter van Elmpt, Mark J. Gooding:
Can Atlas-Based Auto-Segmentation Ever Be Perfect? Insights From Extreme Value Theory. IEEE Trans. Medical Imaging 38(1): 99-106 (2019) - [j4]Bas Schipaanboord, Djamal Boukerroui, Devis Peressutti, Johan van Soest, Tim Lustberg, Andre Dekker, Wouter van Elmpt, Mark J. Gooding:
An Evaluation of Atlas Selection Methods for Atlas-Based Automatic Segmentation in Radiotherapy Treatment Planning. IEEE Trans. Medical Imaging 38(11): 2654-2664 (2019) - [c18]Chang Sun, Lianne Ippel, Johan van Soest, Birgit Wouters, Alexander Malic, Onaopepo Adekunle, Bob van den Berg, Ole Mussmann, Annemarie Koster, Carla van der Kallen, Claudia van Oppen, David Townend, Andre Dekker, Michel Dumontier:
A Privacy-Preserving Infrastructure for Analyzing Personal Health Data in a Vertically Partitioned Scenario. MedInfo 2019: 373-377 - [c17]Zhenwei Shi, Chong Zhang, Inge Compter, Maikel Verduin, Ann Hoeben, Danielle Eekers, Andre Dekker, Leonard Wee:
A Feature-Pooling and Signature-Pooling Method for Feature Selection for Quantitative Image Analysis: Application to a Radiomics Model for Survival in Glioma. RNO-AI@MICCAI 2019: 70-80 - [c16]Johan van Soest, Ananya Choudhury, Nikhil Gaikwad, Matthijs Sloep, Michel Dumontier, Andre Dekker:
Annotation of Existing Databases using Semantic Web Technologies: Making Data more FAIR. SWAT4HCLS 2019: 94-101 - [c15]Alberto Traverso, Zhenwei Shi, Leonard Wee, Andre Dekker:
FAIR Quantitative Imaging in Oncology: how Semantic Web and Ontologies will support Reproducible Science. SWAT4HCLS 2019: 122-126 - [c14]Chang Sun, Vincent Emonet, Johan van Soest, Annemarie Koster, Andre Dekker, Michel Dumontier:
Transformation and Integration of Heterogeneous Health Data in a Privacy-preserving Distributed Learning Infrastructure. SWAT4HCLS 2019: 141-142 - [c13]Alberto Traverso, Martin Vallières, Johan van Soest, Leonard Wee, Olivier Morin, Andre Dekker:
Publishing Linked and FAIR-compliant Radiomics Data in Radiation Oncology via Ontologies and Semantic Web Techniques. SWAT4HCLS 2019: 143-144 - 2018
- [c12]Martine de Vos, Berend Weel, Adriënne M. Mendrik, Andre Dekker, Johan van Soest:
Fast and Easy Mapping of Relational Data to RDF for Rapid Learning Health Care. eScience 2018: 382-383 - [c11]Johan van Soest, Chang Sun, Ole Mussmann, Marco Puts, Bob van den Berg, Alexander Malic, Claudia van Oppen, David Townend, Andre Dekker, Michel Dumontier:
Using the Personal Health Train for Automated and Privacy-Preserving Analytics on Vertically Partitioned Data. MIE 2018: 581-585 - [c10]Tim Lustberg, Johan van Soest, Peter Fick, Rianne Fijten, Tim Hendriks, Sander Puts, Andre Dekker:
Radiation Oncology Terminology Linker: A Step Towards a Linked Data Knowledge Base. MIE 2018: 855-859 - [i1]Chang Sun, Lianne Ippel, Birgit Wouters, Johan van Soest, Alexander Malic, Onaopepo Adekunle, Bob van den Berg, Marco Puts, Ole Mussmann, Annemarie Koster, Carla van der Kallen, David Townend, Andre Dekker, Michel Dumontier:
Analyzing Partitioned FAIR Health Data Responsibly. CoRR abs/1812.00991 (2018) - 2017
- [j3]Mohamed S. Barakat, Matthew Field, Aditya Ghose, David Stirling, Lois Holloway, Shalini K. Vinod, Andre Dekker, David I. Thwaites:
The effect of imputing missing clinical attribute values on training lung cancer survival prediction model performance. Health Inf. Sci. Syst. 5(1): 16 (2017) - 2016
- [c9]Qing Hu, Zhisheng Huang, Annette ten Teije, Frank van Harmelen, M. Scott Marshall, Andre Dekker:
A Topic-centric Approach to Detecting New Evidences for Evidence-based Medical Guidelines. HEALTHINF 2016: 282-289 - 2015
- [j2]Stefan Klein, Erwin Vast, Johan van Soest, Andre Dekker, Marcel Koek, Wiro J. Niessen:
XNAT imaging platform for BioMedBridges and CTMM TraIT. J. Clin. Bioinform. 5(S-1): S18 (2015) - [c8]Andrea Damiani, Mauro Vallati, Roberto Gatta, Nicola Dinapoli, Arthur Jochems, Timo Deist, Johan van Soest, Andre Dekker, Vincenzo Valentini:
Distributed Learning to Protect Privacy in Multi-centric Clinical Studies. AIME 2015: 65-75 - [c7]M. Scott Marshall, Johan van Soest, R. Dresens, J. Paulissen, Philippe Lambin, Andre Dekker:
Information extraction of eligibility criteria for trial enrolment support. MIE 2015: 1034 - 2014
- [c6]Ahmed Ibrahim, Anca I. D. Bucur, Andre Dekker, M. Scott Marshall, David Pérez-Rey, Raúl Alonso-Calvo, Holger Stenzhorn, Sheng Yu, Cyril Krykwinski, Anouar Laarif, Keyur Mehta:
Analysis of the Suitability of Existing Medical Ontologies for Building a Scalable Semantic Interoperability Solution Supporting Multi-site Collaboration in Oncology. BIBE 2014: 204-211 - [c5]Zhisheng Huang, Frank van Harmelen, Annette ten Teije, Andre Dekker:
Feasibility Estimation for Clinical Trials. HEALTHINF 2014: 68-77 - [c4]Johan van Soest, Tim Lustberg, Detlef Grittner, M. Scott Marshall, Lucas Persoon, Bas Nijsten, Peter Feltens, Andre Dekker:
Towards a semantic PACS: Using Semantic Web technology to represent imaging data. MIE 2014: 166-170 - 2013
- [j1]Yuhua Gu, Virendra Kumar, Lawrence O. Hall, Dmitry B. Goldgof, Ching-Yen Li, René Korn, Claus Bendtsen, Emmanuel Rios Velazquez, Andre Dekker, Hugo J. W. L. Aerts, Philippe Lambin, Xiuli Li, Jie Tian, Robert A. Gatenby, Robert J. Gillies:
Automated delineation of lung tumors from CT images using a single click ensemble segmentation approach. Pattern Recognit. 46(3): 692-702 (2013) - 2011
- [c3]Georgi I. Nalbantov, Andre Dekker, Dirk De Ruysscher, Philippe Lambin, Evgueni N. Smirnov:
The Combination of Clinical, Dose-Related and Imaging Features Helps Predict Radiation-Induced Normal-Tissue Toxicity in Lung-cancer Patients - An in-silico Trial Using Machine Learning Techniques. ICMLA (2) 2011: 220-224
2000 – 2009
- 2009
- [c2]Andre Dekker, Cary Dehing-Oberije, Dirk De Ruysscher, Philippe Lambin, Kartik Komati, Glenn Fung, Shipeng Yu, Andrew Hope, Wilfried De Neve, Yolande Lievens:
Survival Prediction in Lung Cancer Treated with Radiotherapy: Bayesian Networks vs. Support Vector Machines in Handling Missing Data. ICMLA 2009: 494-497 - 2008
- [c1]Guillaume Janssens, Jonathan Orban de Xivry, Hugo J. W. L. Aerts, Geert Bosmans, Andre L. A. J. Dekker, Benoît Macq:
Improving physical behavior in image registration. ICIP 2008: 2952-2955
Coauthor Index
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