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2020 – today
- 2023
[j32]Zhichao Hou, Jiacheng Leng, Jiating Yu, Zheng Xia, Ling-Yun Wu:
PathExpSurv: pathway expansion for explainable survival analysis and disease gene discovery. BMC Bioinform. 24(1): 434 (2023)- [j31]Tao Ren
, Canping Chen, Alexey V. Danilov, Susan Liu, Xiangnan Guan, Shunyi Du, Xiwei Wu, Mara H. Sherman, Paul T. Spellman, Lisa M. Coussens, Andrew C. Adey, Gordon B. Mills, Ling-Yun Wu, Zheng Xia:
Supervised learning of high-confidence phenotypic subpopulations from single-cell data. Nat. Mac. Intell. 5(5): 528-541 (2023) - [j30]Tao Ren, Canping Chen, Alexey V. Danilov, Susan Liu, Xiangnan Guan, Shunyi Du, Xiwei Wu, Mara H. Sherman, Paul T. Spellman, Lisa M. Coussens, Andrew C. Adey, Gordon B. Mills, Ling-Yun Wu, Zheng Xia:
Author Correction: Supervised learning of high-confidence phenotypic subpopulations from single-cell data. Nat. Mac. Intell. 5(6): 676 (2023) - 2022
- [j29]Yong Lu, Gang Xue, Ningbo Zheng, Kun Han, Wenzhong Yang, Rui-Sheng Wang, Ling-Yun Wu, Lance D. Miller, Timothy Pardee, Pierre L. Triozzi, Hui-Wen Lo, Kounosuke Watabe, Stephen T. C. Wong, Boris C. Pasche, Wei Zhang, Guangxu Jin:
hDirect-MAP: projection-free single-cell modeling of response to checkpoint immunotherapy. Briefings Bioinform. 23(2) (2022) - [j28]Jiacheng Leng, Ling-Yun Wu:
Interaction-based transcriptome analysis via differential network inference. Briefings Bioinform. 23(6) (2022) - [j27]Jiacheng Leng, Ling-Yun Wu:
Importance-Penalized Joint Graphical Lasso (IPJGL): differential network inference via GGMs. Bioinform. 38(3): 770-777 (2022) - 2021
- [c3]Can Jin, Xin Peng, Qing Liu, Xinhan Ye, Lang Chen, Qiuyue Yuan, Xiang-Sun Zhang, Ling-Yun Wu, Yong Wang:
An Optimization Method for Calibrating Wireline Conveyance Tension. CSDM Asia / CSDM 2021: 159-174 - [i4]Jiating Yu, Jiacheng Leng, Ling-Yun Wu:
Network Refinement: A unified framework for enhancing signal or removing noise of networks. CoRR abs/2109.09119 (2021) - [i3]Jiating Yu, Ling-Yun Wu:
Understanding the network formation pattern for better link prediction. CoRR abs/2110.08850 (2021)
2010 – 2019
- 2019
- [j26]Duanchen Sun, Xian-Wen Ren, Eszter Ari, Tamás Korcsmáros, Peter Csermely, Ling-Yun Wu:
Discovering cooperative biomarkers for heterogeneous complex disease diagnoses. Briefings Bioinform. 20(1): 89-101 (2019) - 2017
- [j25]Zhi-Ping Liu, Shutang Liu, Ruitang Chen, Xiaopeng Huang, Ling-Yun Wu:
Structure alignment-based classification of RNA-binding pockets reveals regional RNA recognition motifs on protein surfaces. BMC Bioinform. 18(1): 27:1-27:13 (2017) - [j24]Duanchen Sun, Yinliang Liu, Xiang-Sun Zhang, Ling-Yun Wu:
NetGen: a novel network-based probabilistic generative model for gene set functional enrichment analysis. BMC Syst. Biol. 11(S-4): 61-74 (2017) - 2015
- [i2]Hui-Jia Li, Yong Wang, Ling-Yun Wu, Junhua Zhang, Xiang-Sun Zhang:
Potts model based on a Markov process computation solves the community structure problem effectively. CoRR abs/1503.08035 (2015) - 2014
- [j23]Junhua Zhang, Ling-Yun Wu, Xiang-Sun Zhang, Shihua Zhang:
Discovery of co-occurring driver pathways in cancer. BMC Bioinform. 15: 271 (2014) - 2013
- [j22]Qiang Huang, Ling-Yun Wu, Xiang-Sun Zhang:
Corbi: a new R package for biological network alignment and querying. BMC Syst. Biol. 7(S-2): S6 (2013) - [j21]Peter Csermely, András London, Ling-Yun Wu, Brian Uzzi:
Structure and dynamics of core/periphery networks. J. Complex Networks 1(2): 93-123 (2013) - [i1]Peter Csermely, András London, Ling-Yun Wu, Brian Uzzi:
Structure and dynamics of core-periphery networks. CoRR abs/1309.6928 (2013) - 2012
- [j20]Junfei Zhao, Shi-Hua Zhang, Ling-Yun Wu, Xiang-Sun Zhang:
Efficient methods for identifying mutated driver pathways in cancer. Bioinform. 28(22): 2940-2947 (2012) - [j19]Yong Wang, Qiao-Feng Wu, Chen Chen, Ling-Yun Wu, Xian-Zhong Yan, ShuGuang Yu, Xiang-Sun Zhang, Fan-Rong Liang:
Revealing metabolite biomarkers for acupuncture treatment by linear programming based feature selection. BMC Syst. Biol. 6(S-1): S15 (2012) - [c2]Qiang Huang, Ling-Yun Wu, Xiang-Sun Zhang:
CNetA: Network alignment by combining biological and topological features. ISB 2012: 220-225 - 2011
- [j18]Qiang Huang, Ling-Yun Wu, Xiang-Sun Zhang:
An efficient network querying method based on conditional random fields. Bioinform. 27(22): 3173-3178 (2011) - 2010
- [j17]Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, Luonan Chen:
Prediction of protein-RNA binding sites by a random forest method with combined features. Bioinform. 26(13): 1616-1622 (2010) - [j16]Xian-Wen Ren, Xiaobo Zhou, Ling-Yun Wu, Xiang-Sun Zhang:
An information-flow-based model with dissipation, saturation and direction for active pathway inference. BMC Syst. Biol. 4: 72 (2010) - [j15]Zheng Xia, Ling-Yun Wu, Xiaobo Zhou, Stephen T. C. Wong:
Semi-supervised drug-protein interaction prediction from heterogeneous biological spaces. BMC Syst. Biol. 4(S-2): S6 (2010)
2000 – 2009
- 2009
- [j14]Ling-Yun Wu, Xiaobo Zhou, Fuhai Li, Xiaorong Yang, Chung-Che Chang, Stephen T. C. Wong:
Conditional random pattern algorithm for LOH inference and segmentation. Bioinform. 25(1): 61-67 (2009) - [j13]Ling-Yun Wu, Zhen-Ping Li, Rui-Sheng Wang, Xiang-Sun Zhang, Luonan Chen:
Self-organizing map approaches for the haplotype assembly problem. Math. Comput. Simul. 79(10): 3026-3037 (2009) - [j12]Yong Wang, Ling-Yun Wu, Ji-Hong Zhang, Zhong-Wei Zhan, Xiang-Sun Zhang, Luonan Chen:
Evaluating Protein Similarity from Coarse Structures. IEEE ACM Trans. Comput. Biol. Bioinform. 6(4): 583-593 (2009) - 2008
- [j11]Ji-Hong Zhang, Ling-Yun Wu, Jian Chen, Xiang-Sun Zhang:
A fast haplotype inference method for large population genotype data. Comput. Stat. Data Anal. 52(11): 4891-4902 (2008) - [j10]Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, Luonan Chen:
Protein cavity clustering based on community structure of pocket similarity network. Int. J. Bioinform. Res. Appl. 4(4): 445-460 (2008) - 2007
- [j9]Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Luonan Chen, Xiang-Sun Zhang:
Predicting gene ontology functions from protein's regional surface structures. BMC Bioinform. 8 (2007) - [j8]Rui-Sheng Wang, Yong Wang, Ling-Yun Wu, Xiang-Sun Zhang, Luonan Chen:
Analysis on multi-domain cooperation for predicting protein-protein interactions. BMC Bioinform. 8 (2007) - [j7]Ji-Hong Zhang, Ling-Yun Wu, Yu-Ying Zhao, Xiang-Sun Zhang:
An optimization approach to the reconstruction of positional DNA sequencing by hybridization with errors. Eur. J. Oper. Res. 182(1): 413-427 (2007) - [j6]Yong Wang, Ling-Yun Wu, Luonan Chen, Xiang-Sun Zhang:
Supervised classification of protein structures based on convex hull representation. Int. J. Bioinform. Res. Appl. 3(2): 123-144 (2007) - 2006
- [j5]Ling-Yun Wu, Xiang-Sun Zhang, Ju-Liang Zhang:
Capacitated facility location problem with general setup cost. Comput. Oper. Res. 33: 1226-1241 (2006) - [c1]Yong Wang, Ling-Yun Wu, Xiang-Sun Zhang, Luonan Chen:
Automatic Classification of Protein Structures Based on Convex Hull Representation by Integrated Neural Network. TAMC 2006: 505-514 - 2005
- [j4]Rui-Sheng Wang, Ling-Yun Wu, Zhen-Ping Li, Xiang-Sun Zhang:
Haplotype reconstruction from SNP fragments by minimum error correction. Bioinform. 21(10): 2456-2462 (2005) - [j3]Yu-Ying Zhao, Ling-Yun Wu, Ji-Hong Zhang, Rui-Sheng Wang, Xiang-Sun Zhang:
Haplotype assembly from aligned weighted SNP fragments. Comput. Biol. Chem. 29(4): 281-287 (2005) - [j2]Xiang-Sun Zhang, Yong Wang, Zhong-Wei Zhan, Ling-Yun Wu, Luonan Chen:
Exploring Protein's Optimal Hp Configurations by Self-organizing Mapping. J. Bioinform. Comput. Biol. 3(2): 385-400 (2005) - 2003
- [j1]Ji-Hong Zhang, Ling-Yun Wu, Xiang-Sun Zhang:
Reconstruction of DNA sequencing by hybridization. Bioinform. 19(1): 14-21 (2003)
Coauthor Index
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