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ORCIDSofie Van Landeghem
Person information
- affiliation: Ghent University, Department of Plant Biotechnology and Bioinformatics, Belgium
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Journal Articles
- 2016
[j9]Suwisa Kaewphan, Sofie Van Landeghem, Tomoko Ohta, Yves Van de Peer, Filip Ginter, Sampo Pyysalo:
Cell line name recognition in support of the identification of synthetic lethality in cancer from text. Bioinform. 32(2): 276-282 (2016)- [j8]Sofie Van Landeghem, Thomas Van Parys, Marieke Dubois
, Dirk Inzé, Yves Van de Peer:
Diffany: an ontology-driven framework to infer, visualise and analyse differential molecular networks. BMC Bioinform. 17: 18 (2016) - 2015
- [j7]Kai Hakala, Sofie Van Landeghem, Tapio Salakoski, Yves Van de Peer, Filip Ginter:
Application of the EVEX resource to event extraction and network construction: Shared Task entry and result analysis. BMC Bioinform. 16(S16): S3 (2015) - 2012
- [j6]Sofie Van Landeghem, Kai Hakala, Samuel Rönnqvist, Tapio Salakoski, Yves Van de Peer, Filip Ginter:
Exploring Biomolecular Literature with EVEX: Connecting Genes through Events, Homology, and Indirect Associations. Adv. Bioinformatics 2012: 582765:1-582765:12 (2012) - [j5]Sofie Van Landeghem, Jari Björne, Thomas Abeel, Bernard De Baets, Tapio Salakoski, Yves Van de Peer:
Semantically linking molecular entities in literature through entity relationships. BMC Bioinform. 13(S-11): S6 (2012) - 2011
- [j4]Yoshinobu Kano, Jari Björne, Filip Ginter, Tapio Salakoski, Ekaterina Buyko, Udo Hahn, K. Bretonnel Cohen, Karin Verspoor, Christophe Roeder, Lawrence E. Hunter, Halil Kilicoglu, Sabine Bergler, Sofie Van Landeghem, Thomas Van Parys, Yves Van de Peer, Makoto Miwa, Sophia Ananiadou, Mariana L. Neves, Alberto D. Pascual-Montano, Arzucan Özgür, Dragomir R. Radev, Sebastian Riedel, Rune Sætre, Hong-Woo Chun, Jin-Dong Kim, Sampo Pyysalo, Tomoko Ohta, Jun'ichi Tsujii:
U-Compare bio-event meta-service: compatible BioNLP event extraction services. BMC Bioinform. 12: 481 (2011) - [j3]Sofie Van Landeghem, Bernard De Baets, Yves Van de Peer, Yvan Saeys:
High-Precision Bio-molecular Event Extraction from Text Using Parallel Binary Classifiers. Comput. Intell. 27(4): 645-664 (2011) - 2010
- [j2]Sofie Van Landeghem, Thomas Abeel, Yvan Saeys, Yves Van de Peer:
Discriminative and informative features for biomolecular text mining with ensemble feature selection. Bioinform. 26(18) (2010) - [j1]Thomas Abeel, Sofie Van Landeghem, Roser Morante, Vincent Van Asch, Yves Van de Peer, Walter Daelemans, Yvan Saeys:
Highlights of the BioTM 2010 workshop on advances in bio text mining. BMC Bioinform. 11(S-5): I1 (2010)
Conference and Workshop Papers
- 2013
- [c8]Kai Hakala, Sofie Van Landeghem, Tapio Salakoski, Yves Van de Peer, Filip Ginter:
EVEX in ST'13: Application of a large-scale text mining resource to event extraction and network construction. BioNLP@ACL (Shared Task) 2013: 26-34 - [c7]Sofie Van Landeghem, Suwisa Kaewphan, Filip Ginter, Yves Van de Peer:
Evaluating Large-scale Text Mining Applications Beyond the Traditional Numeric Performance Measures. BioNLP@ACL 2013: 63-71 - 2012
- [c6]Jari Björne, Sofie Van Landeghem, Sampo Pyysalo, Tomoko Ohta, Filip Ginter, Yves Van de Peer, Sophia Ananiadou, Tapio Salakoski:
PubMed-Scale Event Extraction for Post-Translational Modifications, Epigenetics and Protein Structural Relations. BioNLP@HLT-NAACL 2012: 82-90 - 2011
- [c5]Sofie Van Landeghem, Filip Ginter, Yves Van de Peer, Tapio Salakoski:
EVEX: A PubMed-Scale Resource for Homology-Based Generalization of Text Mining Predictions. BioNLP@ACL 2011: 28-37 - [c4]Sofie Van Landeghem, Thomas Abeel, Bernard De Baets, Yves Van de Peer:
Detecting Entity Relations as a Supporting Task for Bio-Molecular Event Extraction. BioNLP@ACL (Shared Task) 2011: 147-148 - 2010
- [c3]Sofie Van Landeghem, Sampo Pyysalo, Tomoko Ohta, Yves Van de Peer:
Integration of Static Relations to Enhance Event Extraction from Text. BioNLP@ACL 2010: 144-152 - [c2]Yvan Saeys, Sofie Van Landeghem, Yves Van de Peer:
Event based text mining for integrated network construction. MLSB 2010: 112-121 - 2009
- [c1]Sofie Van Landeghem, Yvan Saeys, Bernard De Baets, Yves Van de Peer:
Analyzing text in search of bio-molecular events: a high-precision machine learning framework. BioNLP@HLT-NAACL (Shared Task) 2009: 128-136
Informal and Other Publications
- 2022
- [i1]Lester James Miranda, Ákos Kádár, Adriane Boyd, Sofie Van Landeghem, Anders Søgaard, Matthew Honnibal:
Multi hash embeddings in spaCy. CoRR abs/2212.09255 (2022)
Coauthor Index
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