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2020 – today
- 2020
[j9]Lesley M. Chapman
, Noah Spies, Patrick Pai, Chun Shen Lim, Andrew Carroll, Giuseppe Narzisi, Christopher M. Watson, Christos Proukakis, Wayne E. Clarke, Naoki Nariai, Eric T. Dawson, Garan Jones, Daniel J. Blankenberg, Christian Brueffer, Chunlin Xiao, Sree Rohit Raj Kolora, Noah Alexander, Paul Wolujewicz, Azza E. Ahmed, Graeme Smith, Saadlee Shehreen, Aaron M. Wenger, Marc Salit, Justin M. Zook:
A crowdsourced set of curated structural variants for the human genome. PLoS Comput. Biol. 16(6) (2020)
2010 – 2019
- 2017
- [j8]William W. Greenwald, He Li, Erin N. Smith, Paola Benaglio, Naoki Nariai, Kelly A. Frazer:
Pgltools: a genomic arithmetic tool suite for manipulation of Hi-C peak and other chromatin interaction data. BMC Bioinform. 18(1): 207:1-207:6 (2017) - 2016
- [j7]Naoki Nariai, Kaname Kojima, Takahiro Mimori, Yosuke Kawai, Masao Nagasaki:
A Bayesian approach for estimating allele-specific expression from RNA-Seq data with diploid genomes. BMC Genom. 17(S-1): 2 (2016) - 2015
- [j6]Takahiro Mimori, Naoki Nariai, Kaname Kojima, Yukuto Sato, Yosuke Kawai, Yumi Yamaguchi-Kabata, Masao Nagasaki:
Estimating copy numbers of alleles from population-scale high-throughput sequencing data. BMC Bioinform. 16(S-1): S4 (2015) - [j5]Naoki Nariai, Kaname Kojima, Sakae Saito, Takahiro Mimori, Yukuto Sato, Yosuke Kawai, Yumi Yamaguchi-Kabata, Jun Yasuda, Masao Nagasaki:
HLA-VBSeq: accurate HLA typing at full resolution from whole-genome sequencing data. BMC Genom. 16(S-2): S7 (2015) - 2014
- [c6]Kaname Kojima, Naoki Nariai, Takahiro Mimori, Yumi Yamaguchi-Kabata, Yukuto Sato, Yosuke Kawai, Masao Nagasaki:
HapMonster: A Statistically Unified Approach for Variant Calling and Haplotyping Based on Phase-Informative Reads. AlCoB 2014: 107-118 - [c5]Tomohiko Ohtsuki, Naoki Nariai, Kaname Kojima, Takahiro Mimori, Yukuto Sato, Yosuke Kawai, Yumi Yamaguchi-Kabata, Tetsuo Shibuya, Masao Nagasaki:
SVEM: A Structural Variant Estimation Method Using Multi-mapped Reads on Breakpoints. AlCoB 2014: 208-219 - 2013
- [j4]Naoki Nariai, Osamu Hirose, Kaname Kojima, Masao Nagasaki:
TIGAR: transcript isoform abundance estimation method with gapped alignment of RNA-Seq data by variational Bayesian inference. Bioinform. 29(18): 2292-2299 (2013) - [j3]Kaname Kojima, Naoki Nariai, Takahiro Mimori, Mamoru Takahashi, Yumi Yamaguchi-Kabata, Yukuto Sato, Masao Nagasaki:
A statistical variant calling approach from pedigree information and local haplotyping with phase informative reads. Bioinform. 29(22): 2835-2843 (2013) - [j2]Takahiro Mimori, Naoki Nariai, Kaname Kojima, Mamoru Takahashi, Akira Ono, Yukuto Sato, Yumi Yamaguchi-Kabata, Masao Nagasaki:
iSVP: an integrated structural variant calling pipeline from high-throughput sequencing data. BMC Syst. Biol. 7(S-6): S8 (2013)
2000 – 2009
- 2008
- [j1]Xiaoyu Jiang, Naoki Nariai, Martin Steffen, Simon Kasif, Eric D. Kolaczyk:
Integration of relational and hierarchical network information for protein function prediction. BMC Bioinform. 9 (2008) - [c4]Xiaoyu Jiang, Naoki Nariai, Martin Steffen, Simon Kasif, David Gold, Eric D. Kolaczyk:
Combining Hierarchical Inference in Ontologies with Heterogeneous Data Sources Improves Gene Function Prediction. BIBM 2008: 411-416 - 2005
- [c3]Naoki Nariai, Yoshinori Tamada, Seiya Imoto, Satoru Miyano:
Estimating gene regulatory networks and protein-protein interactions of Saccharomyces cerevisiae from multiple genome-wide data. ECCB/JBI 2005: 212 - [c2]Osamu Hirose, Naoki Nariai, Yoshinori Tamada, Hideo Bannai, Seiya Imoto, Satoru Miyano:
Estimating Gene Networks from Expression Data and Binding Location Data via Boolean Networks. ICCSA (3) 2005: 349-356 - 2004
- [c1]Naoki Nariai, SunYong Kim, Seiya Imoto, Satoru Miyano:
Using Protein-Protein Interactions for Refining Gene Networks Estimated from Microarray Data by Bayesian Networks. Pacific Symposium on Biocomputing 2004: 336-347
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