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Jeroen Raes
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2010 – 2019
- 2016
- [j9]Federico Mattiello, Bie M. P. Verbist, Karoline Faust
, Jeroen Raes
, William D. Shannon, Luc Bijnens, Olivier Thas
:
A web application for sample size and power calculation in case-control microbiome studies. Bioinform. 32(13): 2038-2040 (2016) - [j8]Mohamed Mysara
, Natalie Leys, Jeroen Raes
, Pieter Monsieurs:
IPED: a highly efficient denoising tool for Illumina MiSeq Paired-end 16S rRNA gene amplicon sequencing data. BMC Bioinform. 17: 192 (2016) - [i1]Karoline Faust, Jeroen Raes
:
CoNet app: inference of biological association networks using Cytoscape. F1000Research 5: 1519 (2016) - 2015
- [j7]Mohamed Mysara
, Natalie Leys, Jeroen Raes
, Pieter Monsieurs:
NoDe: a fast error-correction algorithm for pyrosequencing amplicon reads. BMC Bioinform. 16: 88:1-88:10 (2015) - [j6]Kristoffer Forslund
, Falk Hildebrand
, Trine Nielsen
, Gwen Falony
, Emmanuelle Le Chatelier, Shinichi Sunagawa
, Edi Prifti
, Sara Vieira-Silva
, Valborg Gudmundsdottir
, Helle Krogh Pedersen
, Manimozhiyan Arumugam
, Karsten Kristiansen, Anita Yvonne Voigt
, Henrik Vestergaard
, Rajna Hercog, Paul I. Costea
, Jens Roat Kultima, Junhua Li
, Torben Jørgensen
, Florence Levenez, Joël Dore
, Henrik Bjørn Nielsen, Søren Brunak
, Jeroen Raes
, Torben Hansen
, Jun Wang, S. Dusko Ehrlich, Peer Bork
, Oluf Pedersen
:
Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota. Nat. 528(7582): 262-266 (2015) - 2014
- [j5]Manimozhiyan Arumugam, Jeroen Raes
, Eric Pelletier, Denis Le Paslier, Takuji Yamada, Daniel R. Mende, Gabriel R. Fernandes, Julien Tap, Thomas Brüls, Jean-Michel Batto, Marcelo Bertalan, Natalia Borruel, Francesc Casellas
, Leyden Fernández, Laurent Gautier, Torben Hansen
, Masahira Hattori, Tetsuya Hayashi, Michiel Kleerebezem, Ken Kurokawa, Marion Leclerc, Florence Levenez, Chaysavanh Manichanh, Henrik Bjørn Nielsen, Trine Nielsen
, Nicolas Pons, Julie Poulain, Junjie Qin, Thomas Sicheritz-Pontén, Sebastian Tims, David Torrents, Edgardo Ugarte, Erwin G. Zoetendal, Jun Wang
, Francisco Guarner, Oluf Pedersen
, Willem M. de Vos, Søren Brunak, Joël Dore, MetaHIT consortium, Jean Weissenbach, S. Dusko Ehrlich, Peer Bork
:
Addendum: Enterotypes of the human gut microbiome. Nat. 506(7489): 516 (2014) - 2012
- [j4]Karoline Faust
, Jarupon Fah Sathirapongsasuti
, Jacques Izard
, Nicola Segata
, Dirk Gevers, Jeroen Raes
, Curtis Huttenhower
:
Microbial Co-occurrence Relationships in the Human Microbiome. PLoS Comput. Biol. 8(7) (2012) - 2010
- [j3]Manimozhiyan Arumugam
, Eoghan D. Harrington, Konrad U. Foerstner
, Jeroen Raes
, Peer Bork
:
SmashCommunity: a metagenomic annotation and analysis tool. Bioinform. 26(23): 2977-2978 (2010) - [j2]Eoghan D. Harrington, Manimozhiyan Arumugam
, Jeroen Raes
, Peer Bork
, David A. Relman
:
SmashCell: a software framework for the analysis of single-cell amplified genome sequences. Bioinform. 26(23): 2979-2980 (2010)
2000 – 2009
- 2005
- [j1]Sébastien Aubourg, Véronique Brunaud, Clémence Bruyère, J. Mark Cock
, Richard Cooke
, Annick Cottet, Arnaud Couloux
, Patrice Déhais, Gilbert Deléage, Aymeric Duclert, Manuel Echeverria, Aimée Eschbach, Denis Falconet, Ghislain Filippi, Christine Gaspin, Christophe Geourjon, Jean-Michel Grienenberger, Guy Houlné, Elisabeth Jamet, Frédéric Lechauve, Olivier Leleu, Philippe Leroy, Régis Mache, Christian Meyer, Hafed Nedjari, Ioan Negrutiu, Valérie Orsini, Eric Peyretaillade, Cyril Pommier
, Jeroen Raes
, Jean-Loup Risler, Stéphane Rivière, Stephane Rombauts
, Pierre Rouzé, Michel Schneider
, Philippe Schwob, Ian Small
, Ghislain Soumayet-Kampetenga, Darko Stankovski, Claire Toffano, Michael Tognolli
, Michel Caboche, Alain Lecharny:
GeneFarm, structural and functional annotation of Arabidopsis gene and protein families by a network of experts. Nucleic Acids Res. 33(Database-Issue): 641-646 (2005)
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