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ORCIDSteffen Neumann
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- affiliation: Leibniz Institute of Plant Biochemistry, Halle, Germany
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Journal Articles
- 2021
[j18]Emma Schymanski
, Todor Kondic, Steffen Neumann, Paul A. Thiessen, Jian Zhang, Evan Bolton:
Empowering large chemical knowledge bases for exposomics: PubChemLite meets MetFrag. J. Cheminformatics 13(1): 19 (2021)- 2019
- [j17]Payam Emami Khoonsari, Pablo A. Moreno, Sven Bergmann, Joachim Burman, Marco Capuccini, Matteo Carone, Marta Cascante, Pedro de Atauri, Carles Foguet, Alejandra N. González-Beltrán, Thomas Hankemeier, Kenneth Haug, Sijin He, Stephanie Herman, David Johnson, Namrata Kale, Anders Larsson, Steffen Neumann, Kristian Peters, Luca Pireddu, Philippe Rocca-Serra, Pierrick Roger, Rico Rueedi, Christoph Ruttkies, Noureddin Sadawi, Reza M. Salek, Susanna-Assunta Sansone, Daniel Schober, Vitaly A. Selivanov, Etienne A. Thévenot, Michael van Vliet, Gianluigi Zanetti, Christoph Steinbeck, Kim Kultima, Ola Spjuth:
Interoperable and scalable data analysis with microservices: applications in metabolomics. Bioinform. 35(19): 3752-3760 (2019) - [j16]Christoph Ruttkies, Steffen Neumann, Stefan Posch:
Improving MetFrag with statistical learning of fragment annotations. BMC Bioinform. 20(1): 376:1-376:14 (2019) - 2017
- [j15]Emma Schymanski, Christoph Ruttkies, Martin Krauss, Céline Brouard, Tobias Kind, Kai Dührkop, Felicity Allen, Arpana Vaniya, Dries Verdegem, Sebastian Böcker, Juho Rousu, Huibin Shen, Hiroshi Tsugawa, Tanvir Sajed, Oliver Fiehn, Bart Ghesquière, Steffen Neumann:
Critical Assessment of Small Molecule Identification 2016: automated methods. J. Cheminformatics 9(1): 22:1-22:21 (2017) - 2016
- [j14]Christoph Ruttkies, Emma Schymanski, Sebastian Wolf, Juliane Hollender, Steffen Neumann:
MetFrag relaunched: incorporating strategies beyond in silico fragmentation. J. Cheminformatics 8(1): 3:1-3:16 (2016) - 2015
- [j13]Pablo A. Moreno, Stephan Beisken, Bhavana Harsha, Venkatesh Muthukrishnan, Ilinca Tudose, Adriano Dekker, Stefanie Dornfeldt, Franziska Taruttis, Ivo Grosse, Janna Hastings, Steffen Neumann, Christoph Steinbeck:
BiNChE: A web tool and library for chemical enrichment analysis based on the ChEBI ontology. BMC Bioinform. 16: 56:1-56:7 (2015) - [j12]Gunnar Libiseller, Michaela Dvorzak, Ulrike Kleb, Edgar Gander, Tobias Eisenberg, Frank Madeo, Steffen Neumann, Gert Trausinger, Frank Sinner, Thomas R. Pieber, Christoph Magnes:
IPO: a tool for automated optimization of XCMS parameters. BMC Bioinform. 16: 118:1-118:10 (2015) - 2014
- [j11]Alejandra N. González-Beltrán, Steffen Neumann, Eamonn Maguire, Susanna-Assunta Sansone, Philippe Rocca-Serra:
The Risa R/Bioconductor package: integrative data analysis from experimental metadata and back again. BMC Bioinform. 15(S-1): S11 (2014) - 2013
- [j10]Kenneth Haug, Reza M. Salek, Pablo Conesa, Janna Hastings, Paula de Matos, Mark Rijnbeek, Tejasvi Mahendraker, Mark Williams, Steffen Neumann, Philippe Rocca-Serra, Eamonn Maguire, Alejandra N. González-Beltrán, Susanna-Assunta Sansone, Julian L. Griffin, Christoph Steinbeck:
MetaboLights - an open-access general-purpose repository for metabolomics studies and associated meta-data. Nucleic Acids Res. 41(Database-Issue): 781-786 (2013) - 2011
- [j9]Christian Hildebrandt, Sebastian Wolf, Steffen Neumann:
Database supported candidate search for Metabolite identification. J. Integr. Bioinform. 8(2) (2011) - 2010
- [j8]Philippe Rocca-Serra, Marco Brandizi, Eamonn Maguire, Nataliya Sklyar, Chris F. Taylor, Kimberly Begley, Dawn Field, Stephen C. Harris, Winston Hide, Oliver Hofmann, Steffen Neumann, Peter Sterk, Weida Tong, Susanna-Assunta Sansone:
ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level. Bioinform. 26(18): 2354-2356 (2010) - [j7]Sebastian Wolf, Stephan Schmidt, Matthias Müller-Hannemann, Steffen Neumann:
In silico fragmentation for computer assisted identification of metabolite mass spectra. BMC Bioinform. 11: 148 (2010) - 2008
- [j6]Stefan Kuhn, Björn Egert, Steffen Neumann, Christoph Steinbeck:
Building blocks for automated elucidation of metabolites: Machine learning methods for NMR prediction. BMC Bioinform. 9 (2008) - [j5]Eva Lange, Ralf Tautenhahn, Steffen Neumann, Clemens Gröpl:
Critical assessment of alignment procedures for LC-MS proteomics and metabolomics measurements. BMC Bioinform. 9 (2008) - [j4]Ralf Tautenhahn, Christoph Böttcher, Steffen Neumann:
Highly sensitive feature detection for high resolution LC/MS. BMC Bioinform. 9 (2008) - 2007
- [j3]Antje Gaida, Steffen Neumann:
MetHouse: Raw and Preprocessed Mass Spectrometry Data. J. Integr. Bioinform. 4(1) (2007) - 2005
- [j2]Frank Zöllner, Steffen Neumann, Franz Kummert, Gerhard Sagerer:
Database driven test case generation for protein?Cprotein docking. Bioinform. 21(5): 683-684 (2005) - 2002
- [j1]Kerstin Koch, Frank Zöllner, Steffen Neumann, Franz Kummert, Gerhard Sagerer:
Comparing bound and unbound protein structures using energy calculation and rotamer statistics. Silico Biol. 2(3): 351-368 (2002)
Conference and Workshop Papers
- 2023
- [c10]Leyla Jael Castro, Juliane Fluck, Daniel Arend, Matthias Lange, Daniel Martini, Steffen Neumann, Sonja Schimmler, Dietrich Rebholz-Schuhmann:
Schema.org as a Lightweight Harmonization Approach for NFDI. CoRDI 2023 - [c9]Oliver Koepler, Christoph Steinbeck, Felix Bach, Sonja Herres-Pawlis, Nicole Jung, Johannes Liermann, Steffen Neumann, Matthias Razum:
Digitalizing the Chemical Landscape: A Comprehensive Overview and Progress Report of NFDI4Chem. CoRDI 2023 - [c8]Steffen Neumann, Felix Bach, Leyla Jael Castro, Tillmann Fischer, Stefan Hofmann, Pei-Chi Huang, Nicole Jung, Bhavin Katabathuni, Fabian Mauz, René Meier, Venkata Chandrasekhar Nainala, Noura Rayya, Christoph Steinbeck, Oliver Koepler:
Harmonising, Harvesting, and Searching Metadata Across a Repository Federation. CoRDI 2023 - 2016
- [c7]Daniel Schober, Reza M. Salek, Steffen Neumann:
Towards standardized evidence descriptors for metabolite annotations. ODLS 2016: 1-5 - 2013
- [c6]Daniel Schober, Gerhard Mayer, Annick Moing, Martin Eisenacher, Steffen Neumann:
Ontological analysis of controlled vocabularies used in PSI/MSI supported XML standards. GI-Jahrestagung 2013: 1875-1888 - 2007
- [c5]Ralf Tautenhahn, Christoph Böttcher, Steffen Neumann:
Annotation of LC/ESI-MS Mass Signals. BIRD 2007: 371-380 - [c4]Björn Egert, Steffen Neumann, Alexander Hinneburg:
Fast Approximate Duplicate Detection for 2D-NMR Spectra. DILS 2007: 139-155 - [c3]Alexander Hinneburg, Ralf Klinkenberg, Ingo Mierswa, Stefan Posch, Steffen Neumann:
Workshop on Knowledge Discovery, Data Mining, and Machine Learning and Workshop on Bioinformatics. LWA 2007: 12 - 2006
- [c2]Sebastian Klie, Steffen Neumann:
Storage and Processing of Mass Spectrometry Data. DEXA Workshops 2006: 211-215 - 1999
- [c1]Steffen Neumann, Stefan Posch, Gerhard Sagerer:
Towards Evaluation of Docking Hypotheses using elastic Matching. German Conference on Bioinformatics 1999: 220-221
Editorship
- 2009
- [e1]Ivo Grosse, Steffen Neumann, Stefan Posch, Falk Schreiber, Peter F. Stadler:
German Conference on Bioinformatics 2009, 28th to 30th September 2009, Martin Luther University Halle-Wittenberg, Germany. LNI P-157, GI 2009, ISBN 978-3-88579-251-2 [contents]
Informal and Other Publications
- 2023
- [i3]Kathryn Dumschott, Hannah Dörpholz, Marie-Angélique Laporte, Dominik Brilhaus, Andrea Schrader, Björn Usadel, Steffen Neumann, Elizabeth Arnaud, Angela Kranz:
Ontologies for increasing the FAIRness of plant research data. CoRR abs/2309.07129 (2023) - 2017
- [i2]Merlijn N. van Rijswijk, Charlie Beirnaert, Christophe Caron, Marta Cascante, Victoria Dominguez Del Angel, Warwick B. Dunn, Timothy M. D. Ebbels, Franck Giacomoni, Alejandra N. González-Beltrán, Thomas Hankemeier, Kenneth Haug, Jose L. Izquierdo-García, Rafael C. Jiménez, Fabien Jourdan, Namrata Kale, Maria I. Klapa, Oliver Kohlbacher, Kairi Koort, Kim Kultima, Gildas Le Corguillé, Nicholas K. Moschonas, Steffen Neumann, Claire O'Donovan, Martin Reczko, Philippe Rocca-Serra, Antonio Rosato, Reza M. Salek, Susanna-Assunta Sansone, Venkata P. Satagopam, Daniel Schober, Ruth Shimmo, Rachel A. Spicer, Ola Spjuth, Etienne A. Thévenot, Mark R. Viant, Ralf J. M. Weber, Egon L. Willighagen, Gianluigi Zanetti, Christoph Steinbeck:
The future of metabolomics in ELIXIR. F1000Research 6: 1649- (2017) - [i1]Masanori Arita, Sebastian Böcker, Steffen Neumann:
Computational Metabolomics (NII Shonan Meeting 2017-3). NII Shonan Meet. Rep. 2017 (2017)
Coauthor Index
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last updated on 2023-11-14 02:02 CET by the dblp team
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