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2020 – today
- 2022
[j14]Joe Wandy
, Vinny Davies, Ross McBride, Stefan Weidt, Simon Rogers, Rónán Daly:
ViMMS 2.0: A framework to develop, test and optimise fragmentation strategies in LC-MS metabolomics. J. Open Source Softw. 7(71): 3990 (2022)- 2021
- [j13]Joe Wandy, Rónán Daly:
GraphOmics: an interactive platform to explore and integrate multi-omics data. BMC Bioinform. 22(1): 603 (2021) - [j12]Mu Niu, Joe Wandy, Rónán Daly, Simon Rogers, Dirk Husmeier:
R package for statistical inference in dynamical systems using kernel based gradient matching: KGode. Comput. Stat. 36(1): 715-747 (2021) - [j11]Grímur Hjörleifsson Eldjárn, Andrew Ramsay, Justin J. J. van der Hooft, Katherine R. Duncan, Sylvia Soldatou, Juho Rousu, Rónán Daly, Joe Wandy, Simon Rogers:
Ranking microbial metabolomic and genomic links in the NPLinker framework using complementary scoring functions. PLoS Comput. Biol. 17(5) (2021)
2010 – 2019
- 2018
- [j10]Joe Wandy, Yunfeng Zhu, Justin J. J. van der Hooft, Rónán Daly, Michael P. Barrett, Simon Rogers:
Ms2lda.org: web-based topic modelling for substructure discovery in mass spectrometry. Bioinform. 34(2): 317-318 (2018) - [j9]Joe Wandy, Mu Niu, Diana Giurghita, Rónán Daly, Simon Rogers, Dirk Husmeier:
ShinyKGode: an interactive application for ODE parameter inference using gradient matching. Bioinform. 34(13): 2314-2315 (2018) - [j8]Anargyros Megalios, Rónán Daly, Karl E. V. Burgess:
MetaboCraft: building a Minecraft plugin for metabolomics. Bioinform. 34(15): 2693-2694 (2018) - 2017
- [j7]Yoann Gloaguen, Fraser R. Morton, Rónán Daly, Ross Gurden, Simon Rogers, Joe Wandy, David Wilson, Michael P. Barrett, Karl E. V. Burgess:
PiMP my metabolome: an integrated, web-based tool for LC-MS metabolomics data. Bioinform. 33(24): 4007-4009 (2017) - 2015
- [j6]Joe Wandy, Rónán Daly, Rainer Breitling, Simon Rogers:
Incorporating peak grouping information for alignment of multiple liquid chromatography-mass spectrometry datasets. Bioinform. 31(12): 1999-2006 (2015) - 2014
- [j5]Rónán Daly, Simon Rogers, Joe Wandy, Andris Jankevics, Karl E. V. Burgess, Rainer Breitling:
MetAssign: probabilistic annotation of metabolites from LC-MS data using a Bayesian clustering approach. Bioinform. 30(19): 2764-2771 (2014) - [i1]Rónán Daly, Qiang Shen:
Learning Bayesian Network Equivalence Classes with Ant Colony Optimization. CoRR abs/1401.3464 (2014) - 2012
- [j4]Rónán Daly, Shishir Kumar, Gyongyi Lukacs, Kangho Lee, Anne Weidlich, Martin Hegner, Georg S. Duesberg:
Cell Proliferation Tracking Using Graphene Sensor Arrays. J. Sensors 2012: 219485:1-219485:7 (2012) - 2011
- [j3]Rónán Daly, Qiang Shen, J. Stuart Aitken:
Learning Bayesian networks: approaches and issues. Knowl. Eng. Rev. 26(2): 99-157 (2011)
2000 – 2009
- 2009
- [j2]Rónán Daly, Qiang Shen:
Learning Bayesian Network Equivalence Classes with Ant Colony Optimization. J. Artif. Intell. Res. 35: 391-447 (2009) - [c2]Rónán Daly, Kieron D. Edwards, John S. O'Neill, J. Stuart Aitken, Andrew J. Millar, Mark A. Girolami:
Using Higher-Order Dynamic Bayesian Networks to Model Periodic Data from the Circadian Clock of Arabidopsis Thaliana. PRIB 2009: 67-78 - 2006
- [c1]Rónán Daly, Qiang Shen, J. Stuart Aitken:
Speeding up the learning of equivalence classes of bayesian network structures. Artificial Intelligence and Soft Computing 2006: 34-39 - 2005
- [j1]J. Stuart Aitken, Thanyaluk Jirapech-Umpai, Rónán Daly:
Inferring gene regulatory networks from classified microarray data: Initial results. BMC Bioinform. 6(S-3) (2005)
Coauthor Index
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