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Jason E. Shoemaker
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2020 – today
- 2021
- [j10]Robert W. Gregg
, Fathima Shabnam, Jason E. Shoemaker:
Agent-based modeling reveals benefits of heterogeneous and stochastic cell populations during cGAS-mediated IFNβ production. Bioinform. 37(10): 1428-1434 (2021) - [j9]Heeju Noh
, Ziyi Hua, Panagiotis Chrysinas, Jason E. Shoemaker, Rudiyanto Gunawan
:
DeltaNeTS+: elucidating the mechanism of drugs and diseases using gene expression and transcriptional regulatory networks. BMC Bioinform. 22(1): 108 (2021) - [j8]Josua Aponte-Serrano
, Jordan J. A. Weaver
, T. J. Sego
, James A. Glazier
, Jason E. Shoemaker
:
Multicellular spatial model of RNA virus replication and interferon responses reveals factors controlling plaque growth dynamics. PLoS Comput. Biol. 17(10) (2021)
2010 – 2019
- 2019
- [j7]Emily E. Ackerman
, John F. Alcorn, Takeshi Hase, Jason E. Shoemaker:
A dual controllability analysis of influenza virus-host protein-protein interaction networks for antiviral drug target discovery. BMC Bioinform. 20(1): 297:1-297:13 (2019) - 2013
- [j6]Yukiko Matsuoka, Hiromi Matsumae, Manami Katoh, Amie J. Eisfeld
, Gabriele Neumann, Takeshi Hase, Samik Ghosh, Jason E. Shoemaker
, Tiago J. S. Lopes, Tokiko Watanabe, Shinji Watanabe, Satoshi Fukuyama, Hiroaki Kitano, Yoshihiro Kawaoka:
A comprehensive map of the influenza A virus replication cycle. BMC Syst. Biol. 7: 97 (2013) - [j5]Martin H. Schaefer
, Tiago J. S. Lopes, Nancy Mah
, Jason E. Shoemaker
, Yukiko Matsuoka, Jean-Fred Fontaine, Caroline Louis-Jeune, Amie J. Eisfeld
, Gabriele Neumann, Carol Perez-Iratxeta, Yoshihiro Kawaoka, Hiroaki Kitano, Miguel A. Andrade-Navarro
:
Adding Protein Context to the Human Protein-Protein Interaction Network to Reveal Meaningful Interactions. PLoS Comput. Biol. 9(1) (2013) - 2012
- [j4]Jason E. Shoemaker
, Satoshi Fukuyama, Amie J. Eisfeld
, Yukiko Muramoto, Shinji Watanabe, Tokiko Watanabe, Yukiko Matsuoka, Hiroaki Kitano, Yoshihiro Kawaoka:
Integrated network analysis reveals a novel role for the cell cycle in 2009 pandemic influenza virus-induced inflammation in macaque lungs. BMC Syst. Biol. 6: 117 (2012) - 2011
- [j3]Tiago J. S. Lopes, Martin H. Schaefer
, Jason E. Shoemaker
, Yukiko Matsuoka, Jean-Fred Fontaine, Gabriele Neumann, Miguel A. Andrade-Navarro
, Yoshihiro Kawaoka, Hiroaki Kitano:
Tissue-specific subnetworks and characteristics of publicly available human protein interaction databases. Bioinform. 27(17): 2414-2421 (2011) - 2010
- [j2]Jason E. Shoemaker
, Kalyan Gayen
, Natàlia Garcia-Reyero, Edward J. Perkins, Daniel L. Villeneuve, Li Liu, Francis J. Doyle:
Fathead minnow steroidogenesis: in silico analyses reveals tradeoffs between nominal target efficacy and robustness to cross-talk. BMC Syst. Biol. 4: 89 (2010) - [j1]Camilla Luni
, Jason E. Shoemaker
, Kevin R. Sanft, Linda R. Petzold, Francis J. Doyle III:
Confidence from uncertainty - A multi-target drug screening method from robust control theory. BMC Syst. Biol. 4: 161 (2010)
2000 – 2009
- 2009
- [p1]Henry Mirsky, Jörg Stelling, Rudiyanto Gunawan
, Neda Bagheri, Stephanie R. Taylor, Eric Kwei, Jason E. Shoemaker, Francis J. Doyle III:
Automatic Control in Systems Biology. Handbook of Automation 2009: 1335-1360
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