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ORCIDLuiz M. R. Gadelha Jr.
Person information
- affiliation: Friedrich Schiller University Jena, Germany
- affiliation: National Laboratory of Scientific Computing, Petrópolis, Brazil
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Journal Articles
- 2024
[j11]Raquel Lopes Costa, Luiz M. R. Gadelha Jr., Mirela D'arc, Marcelo Ribeiro-Alves, David L. Robertson, Jean-Marc Schwartz, Marcelo A. Soares, Fábio Porto:
HIHISIV: a database of gene expression in HIV and SIV host immune response. BMC Bioinform. 25(1): 125 (2024)- 2023
- [j10]Mahnoor Zulfiqar, Luiz M. R. Gadelha Jr.
, Christoph Steinbeck, Maria Sorokina, Kristian Peters:
MAW: the reproducible Metabolome Annotation Workflow for untargeted tandem mass spectrometry. J. Cheminformatics 15(1): 32 (2023) - 2022
- [j9]Lucas Cruz, Micaella Coelho, Marcelo Galheigo, André Ramos Carneiro, Diego Carvalho, Luiz M. R. Gadelha Jr., Francieli Zanon Boito, Philippe O. A. Navaux, Carla Osthoff, Kary A. C. S. Ocaña:
Parallel Performance and I/O Profiling of HPC RNA-Seq Applications. Computación y Sistemas 26(4) (2022) - 2021
- [j8]Luiz M. R. Gadelha Jr., Pedro C. de Siracusa, Eduardo Couto Dalcin, Luís Alexandre Estevão da Silva, Douglas Adriano Augusto, Eduardo Krempser, Helen Michelle Affe, Raquel Lopes Costa, Maria Luiza Mondelli, Pedro Milet Meirelles, Fabiano L. Thompson, Marcia Chame, Artur Ziviani, Marinez Ferreira de Siqueira:
A survey of biodiversity informatics: Concepts, practices, and challenges. WIREs Data Mining Knowl. Discov. 11(1) (2021) - 2020
- [j7]Kary A. C. S. Ocaña, Marcelo Galheigo, Carla Osthoff, Luiz M. R. Gadelha Jr., Fábio Porto, Antônio Tadeu A. Gomes, Daniel de Oliveira, Ana Tereza Ribeiro de Vasconcelos:
BioinfoPortal: A scientific gateway for integrating bioinformatics applications on the Brazilian national high-performance computing network. Future Gener. Comput. Syst. 107: 192-214 (2020) - 2019
- [j6]Maria Luiza Mondelli, Luiz M. R. Gadelha Jr., Artur Ziviani:
O Que os Países escutam: Analisando a Rede de Gêneros Musicais ao Redor do Mundo. Braz. J. Inf. Syst. 12(3): 53-72 (2019) - [j5]Marcia Chame, Helio J. C. Barbosa, Luiz M. R. Gadelha Jr., Douglas Adriano Augusto, Eduardo Krempser, Livia Abdalla:
SISS-Geo: Leveraging Citizen Science to Monitor Wildlife Health Risks in Brazil. J. Heal. Informatics Res. 3(4): 414-440 (2019) - 2015
- [j4]Pedro Milet Meirelles, Luiz M. R. Gadelha Jr., Ronaldo Bastos Francini-Filho, Rodrigo Leão de Moura, Gilberto Menezes Amado-Filho, Alex Cardoso Bastos, Rodolfo Pinheiro da Rocha Paranhos, Carlos Eduardo Rezende, Jean Swings, Eduardo Siegle, Nils Edvin Asp Neto, Sigrid Neumann Leitão, Ricardo Coutinho, Marta Mattoso, Paulo S. Salomon, Rogério A. B. Valle, Renato Crespo Pereira, Ricardo Henrique Kruger, Cristiane Thompson, Fabiano L. Thompson:
BaMBa: towards the integrated management of Brazilian marine environmental data. Database J. Biol. Databases Curation 2015 (2015) - 2014
- [j3]Rocío Zorrilla, Maira Poltosi, Luiz M. R. Gadelha Jr., Fábio Porto, Ana Maria de Carvalho Moura, A. Dalto, Helena P. Lavrado, Yocie Yoneshigue-Valentin, M. Tenório, E. Xavier:
Conceptual View Representation of the Brazilian Information System on Antarctic Environmental Research. Data Sci. J. 13: PDA20-PDA26 (2014) - 2012
- [j2]Luiz M. R. Gadelha Jr., Michael Wilde, Marta Mattoso, Ian T. Foster:
MTCProv: a practical provenance query framework for many-task scientific computing. Distributed Parallel Databases 30(5-6): 351-370 (2012) - 2011
- [j1]Luiz M. R. Gadelha Jr., Ben Clifford, Marta Mattoso, Michael Wilde, Ian T. Foster:
Provenance management in Swift. Future Gener. Comput. Syst. 27(6): 775-780 (2011)
Conference and Workshop Papers
- 2023
- [c15]Luiz M. R. Gadelha Jr., Jan Eufinger:
The German Human Genome-Phenome Archive in an International Context: Toward a Federated Infrastructure for Managing and Analyzing Genomics and Health Data. CoRDI 2023 - 2022
- [c14]Kary A. C. S. Ocaña, Lucas Cruz, Micaella Coelho, Rafael Terra, Marcelo Galheigo, Andre Ramos Carneiro, Diego Carvalho, Luiz M. R. Gadelha Jr., Francieli Zanon Boito, Philippe O. A. Navaux, Carla Osthoff:
ParslRNA-Seq: An Efficient and Scalable RNAseq Analysis Workflow for Studies of Differentiated Gene Expression. CARLA 2022: 174-189 - [c13]Luiz M. R. Gadelha Jr., Martin Hohmuth, Mahnoor Zulfiqar, David Schöne, Sheeba Samuel, Maria Sorokina, Christoph Steinbeck, Birgitta König-Ries:
Toward a Framework for Integrative, FAIR, and Reproducible Management of Data on the Dynamic Balance of Microbial Communities. e-Science 2022: 443-449 - 2021
- [c12]Maria Luiza Mondelli, Sheeba Samuel, Birgitta König-Ries, Luiz M. R. Gadelha Jr.:
Capturing and Semantically Describing Provenance to Tell the Story of R Scripts. e-Science 2021: 283-288 - 2019
- [c11]Kary Ann del Carmen Ocaña Gautherot, Marcelo Galheigo, Carla Osthoff, Luiz M. R. Gadelha Jr., Antônio Tadeu A. Gomes, Daniel de Oliveira, Fábio Porto, Ana Tereza Ribeiro de Vasconcelos:
Towards a Science Gateway for Bioinformatics: Experiences in the Brazilian System of High Performance Computing. CCGRID 2019: 638-647 - [c10]Maria Luiza Mondelli, A. Townsend Peterson, Luiz M. R. Gadelha Jr.:
Exploring Reproducibility and FAIR Principles in Data Science Using Ecological Niche Modeling as a Case Study. ER Workshops 2019: 23-33 - 2017
- [c9]Andrea Sánchez-Tapia, Marinez Ferreira de Siqueira, Rafael Oliveira Lima, Felipe Sodré M. Barros, Guilherme M. Gall, Luiz M. R. Gadelha Jr., Luís Alexandre Estevão da Silva, Carla Osthoff:
Model-R: A Framework for Scalable and Reproducible Ecological Niche Modeling. CARLA 2017: 218-232 - 2014
- [c8]Luiz M. R. Gadelha Jr., Marta Mattoso:
Applying Provenance to Protect Attribution in Distributed Computational Scientific Experiments. IPAW 2014: 139-151 - 2013
- [c7]Luiz M. R. Gadelha Jr., Michael Wilde, Marta Mattoso, Ian T. Foster:
Provenance traces of the swift parallel scripting system. EDBT/ICDT Workshops 2013: 325-326 - 2011
- [c6]Luiz M. R. Gadelha Jr., Marta Mattoso, Michael Wilde, Ian T. Foster:
Provenance Query Patterns for Many-Task Scientific Computing. TaPP 2011 - 2010
- [c5]Luiz M. R. Gadelha Jr., Marta Mattoso, Michael Wilde, Ian T. Foster:
Towards a Threat Model for Provenance in e-Science. IPAW 2010: 277-279 - 2008
- [c4]Sérgio Manuel Serra da Cruz, Fabrício Nogueira da Silva, Luiz M. R. Gadelha Jr., Maria Cláudia Reis Cavalcanti, Maria Luiza Machado Campos, Marta Mattoso:
A Lightweight Middleware Monitor for Distributed Scientific Workflows. CCGRID 2008: 693-698 - [c3]Luiz M. R. Gadelha Jr., Marta Mattoso:
Kairos: An Architecture for Securing Authorship and Temporal Information of Provenance Data in Grid-Enabled Workflow Management Systems. eScience 2008: 597-602 - 2007
- [c2]Luiz M. R. Gadelha Jr., Bruno Schulze:
On the management of grid credentials. MGC 2007: 10 - 2001
- [c1]Luiz M. R. Gadelha Jr., Mauricio Ayala-Rincón:
An Efficient Strategy for Word-Cycle Completion in Finitely Presented Groups. SCCC 2001: 80-85
Informal and Other Publications
- 2022
- [i4]Luiz M. R. Gadelha Jr., Martin Hohmuth, Mahnoor Zulfiqar, David Schöne, Sheeba Samuel, Maria Sorokina, Christoph Steinbeck, Birgitta König-Ries:
Toward a Framework for Integrative, FAIR, and Reproducible Management of Data on the Dynamic Balance of Microbial Communities. CoRR abs/2207.06890 (2022) - 2019
- [i3]Maria Luiza Mondelli, A. Townsend Peterson, Luiz M. R. Gadelha Jr.:
Exploring Reproducibility and FAIR Principles in Data Science Using Ecological Niche Modeling as a Case Study. CoRR abs/1909.00271 (2019) - 2018
- [i2]Maria Luiza Mondelli, Thiago Magalhães, Guilherme Loss, Michael Wilde, Ian T. Foster, Marta Mattoso, Daniel S. Katz, Helio J. C. Barbosa, Ana Tereza Ribeiro de Vasconcelos, Kary A. C. S. Ocaña, Luiz M. R. Gadelha Jr.:
BioWorkbench: A High-Performance Framework for Managing and Analyzing Bioinformatics Experiments. CoRR abs/1801.03915 (2018) - [i1]Luiz M. R. Gadelha Jr., Pedro C. de Siracusa, Artur Ziviani, Eduardo Couto Dalcin, Helen Michelle Affe, Marinez Ferreira de Siqueira, Luís Alexandre Estevão da Silva, Douglas Adriano Augusto, Eduardo Krempser, Marcia Chame, Raquel Lopes Costa, Pedro Milet Meirelles, Fabiano L. Thompson:
A Survey of e-Biodiversity: Concepts, Practices, and Challenges. CoRR abs/1810.00224 (2018)
Coauthor Index
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