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Journal Articles
- 2022
[j15]Bas van Stein
, Elena Raponi, Zahra Sadeghi, Niek Bouman, Roeland C. H. J. van Ham, Thomas Bäck:
A Comparison of Global Sensitivity Analysis Methods for Explainable AI With an Application in Genomic Prediction. IEEE Access 10: 103364-103381 (2022)- 2021
- [j14]Amelia Villegas-Morcillo, Stavros Makrodimitris, Roeland C. H. J. van Ham, Angel M. Gomez, Victoria E. Sánchez, Marcel J. T. Reinders:
Unsupervised protein embeddings outperform hand-crafted sequence and structure features at predicting molecular function. Bioinform. 37(2): 162-170 (2021) - 2020
- [j13]Stavros Makrodimitris, Marcel J. T. Reinders, Roeland C. H. J. van Ham:
Metric learning on expression data for gene function prediction. Bioinform. 36(4): 1182-1190 (2020) - 2019
- [j12]Stavros Makrodimitris, Roeland C. H. J. van Ham, Marcel J. T. Reinders:
Improving protein function prediction using protein sequence and GO-term similarities. Bioinform. 35(7): 1116-1124 (2019) - 2011
- [j11]Janrdanan Sreekumar, Cajo J. F. ter Braak, Roeland C. H. J. van Ham, Aalt D. J. van Dijk:
Correlated mutations via regularized multinomial regression. BMC Bioinform. 12: 444 (2011) - [j10]Jose M. Muiño, Marlous Hoogstraat, Roeland C. H. J. van Ham, Aalt D. J. van Dijk:
PRI-CAT: a web-tool for the analysis, storage and visualization of plant ChIP-seq experiments. Nucleic Acids Res. 39(Web-Server-Issue): 524-527 (2011) - [j9]Peter Boyen, Dries Van Dyck, Frank Neven, Roeland C. H. J. van Ham, Aalt D. J. van Dijk:
SLIDER: A Generic Metaheuristic for the Discovery of Correlated Motifs in Protein-Protein Interaction Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 8(5): 1344-1357 (2011) - 2010
- [j8]Simon van Mourik, Aalt D. J. van Dijk, Maarten de Gee, Richard G. H. Immink, Kerstin Kaufmann, Gerco C. Angenent, Roeland C. H. J. van Ham, Jaap Molenaar:
Continuous-time modeling of cell fate determination in Arabidopsis flowers. BMC Syst. Biol. 4: 101 (2010) - [j7]Aalt D. J. van Dijk, Giuseppa Morabito, Martijn Fiers, Roeland C. H. J. van Ham, Gerco C. Angenent, Richard G. H. Immink:
Sequence Motifs in MADS Transcription Factors Responsible for Specificity and Diversification of Protein-Protein Interaction. PLoS Comput. Biol. 6(11) (2010) - 2009
- [j6]V. V. Mihaleva, H. A. Verhoeven, R. C. H. de Vos, R. D. Hall, Roeland C. H. J. van Ham:
Automated procedure for candidate compound selection in GC-MS metabolomics based on prediction of Kovats retention index. Bioinform. 25(6): 787-794 (2009) - 2008
- [j5]Aalt D. J. van Dijk, Cajo J. F. ter Braak, Richard G. H. Immink, Gerco C. Angenent, Roeland C. H. J. van Ham:
Predicting and understanding transcription factor interactions based on sequence level determinants of combinatorial control. Bioinform. 24(1): 26-33 (2008) - [j4]Aalt D. J. van Dijk, D. Bosch, Cajo J. F. ter Braak, A. R. van der Krol, Roeland C. H. J. van Ham:
Predicting sub-Golgi localization of type II membrane proteins. Bioinform. 24(16): 1779-1786 (2008) - [j3]Mark W. E. J. Fiers, Ate van der Burgt, Erwin Datema, Joost C. W. de Groot, Roeland C. H. J. van Ham:
High-throughput bioinformatics with the Cyrille2 pipeline system. BMC Bioinform. 9 (2008) - 2007
- [j2]Yiannis Kourmpetis, Ate van der Burgt, Marco C. A. M. Bink, Cajo J. F. ter Braak, Roeland C. H. J. van Ham:
The Use of Multiple Hierarchically Independent Gene Ontology Terms in Gene Function Prediction and Genome Annotation. Silico Biol. 7(6): 575-582 (2007) - 2004
- [j1]Mark W. E. J. Fiers, Gijs A. Kleter, Herman Nijland, Jan Peter Nap, Roeland C. H. J. van Ham:
Allermatch(tm), a webtool for the prediction of potential allergenicity according to current FAO/WHO Codex alimentarius guidelines. BMC Bioinform. 5: 133 (2004)
Conference and Workshop Papers
- 2009
- [c1]Peter Boyen, Frank Neven, Dries Van Dyck, Aalt D. J. van Dijk, Roeland C. H. J. van Ham:
SLIDER: Mining Correlated Motifs in Protein-Protein Interaction Networks. ICDM 2009: 716-721
Coauthor Index
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