BibTeX records: Matús Kalas

download as .bib file

@article{DBLP:journals/bib/IsonMBJSRLPKCHS20,
  author    = {Jon C. Ison and
               Herv{\'{e}} M{\'{e}}nager and
               Bryan Brancotte and
               Erik Jaaniso and
               Ahto Salumets and
               Tom{\'{a}}s Racek and
               Anna{-}Lena Lamprecht and
               Magnus Palmblad and
               Mat{\'{u}}s Kalas and
               Piotr Chmura and
               John M. Hancock and
               Veit Schw{\"{a}}mmle and
               Hans{-}Ioan Ienasescu},
  title     = {Community curation of bioinformatics software and data resources},
  journal   = {Briefings Bioinform.},
  volume    = {21},
  number    = {5},
  pages     = {1697--1705},
  year      = {2020},
  url       = {https://doi.org/10.1093/bib/bbz075},
  doi       = {10.1093/bib/bbz075},
  timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/journals/bib/IsonMBJSRLPKCHS20.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dase/MollerPWRCPSKBK17,
  author    = {Steffen M{\"{o}}ller and
               Stuart W. Prescott and
               Lars Wirzenius and
               Petter Reinholdtsen and
               Brad Chapman and
               Pjotr Prins and
               Stian Soiland{-}Reyes and
               Fabian Kl{\"{o}}tzl and
               Andrea Bagnacani and
               Mat{\'{u}}s Kalas and
               Andreas Tille and
               Michael R. Crusoe},
  title     = {Robust Cross-Platform Workflows: How Technical and Scientific Communities
               Collaborate to Develop, Test and Share Best Practices for Data Analysis},
  journal   = {Data Sci. Eng.},
  volume    = {2},
  number    = {3},
  pages     = {232--244},
  year      = {2017},
  url       = {https://doi.org/10.1007/s41019-017-0050-4},
  doi       = {10.1007/s41019-017-0050-4},
  timestamp = {Tue, 01 Sep 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/dase/MollerPWRCPSKBK17.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/IsonRMKRCABBBBB16,
  author    = {Jon C. Ison and
               Kristoffer Rapacki and
               Herv{\'{e}} M{\'{e}}nager and
               Mat{\'{u}}s Kalas and
               Emil Rydza and
               Piotr Chmura and
               Christian Anthon and
               Niall Beard and
               Karel Berka and
               Dan M. Bolser and
               Tim Booth and
               Anthony Bretaudeau and
               Jan Brezovsky and
               Rita Casadio and
               Gianni Cesareni and
               Frederik Coppens and
               Michael Cornell and
               Gianmauro Cuccuru and
               Kristian Davidsen and
               Gianluca Della Vedova and
               Tunca Dogan and
               Olivia Doppelt{-}Azeroual and
               Laura Emery and
               Elisabeth Gasteiger and
               Thomas Gatter and
               Tatyana Goldberg and
               Marie Grosjean and
               Bj{\"{o}}rn A. Gr{\"{u}}ning and
               Manuela Helmer{-}Citterich and
               Hans Ienasescu and
               Vassilios Ioannidis and
               Martin Closter Jespersen and
               Rafael C. Jimenez and
               Nick S. Juty and
               Peter Juvan and
               Maximilian Koch and
               Camille Laibe and
               Jing{-}Woei Li and
               Luana Licata and
               Fabien Mareuil and
               Ivan Micetic and
               Rune M{\o}llegaard Friborg and
               S{\'{e}}bastien Moretti and
               Chris Morris and
               Steffen M{\"{o}}ller and
               Aleksandra Nenadic and
               Hedi Peterson and
               Giuseppe Profiti and
               Peter M. Rice and
               Paolo Romano and
               Paola Roncaglia and
               Rabie Saidi and
               Andrea Schafferhans and
               Veit Schw{\"{a}}mmle and
               Callum Smith and
               Maria Maddalena Sperotto and
               Heinz Stockinger and
               Radka Svobodov{\'{a}} Varekov{\'{a}} and
               Silvio C. E. Tosatto and
               Victor de la Torre and
               Paolo Uva and
               Allegra Via and
               Guy Yachdav and
               Federico Zambelli and
               Gert Vriend and
               Burkhard Rost and
               Helen E. Parkinson and
               Peter L{\o}ngreen and
               S{\o}ren Brunak},
  title     = {Tools and data services registry: a community effort to document bioinformatics
               resources},
  journal   = {Nucleic Acids Res.},
  volume    = {44},
  number    = {Database-Issue},
  pages     = {38--47},
  year      = {2016},
  url       = {https://doi.org/10.1093/nar/gkv1116},
  doi       = {10.1093/nar/gkv1116},
  timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/journals/nar/IsonRMKRCABBBBB16.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sttt/MenagerKRI16,
  author    = {Herv{\'{e}} M{\'{e}}nager and
               Mat{\'{u}}s Kalas and
               Kristoffer Rapacki and
               Jon C. Ison},
  title     = {Using registries to integrate bioinformatics tools and services into
               workbench environments},
  journal   = {Int. J. Softw. Tools Technol. Transf.},
  volume    = {18},
  number    = {6},
  pages     = {581--586},
  year      = {2016},
  url       = {https://doi.org/10.1007/s10009-015-0392-z},
  doi       = {10.1007/s10009-015-0392-z},
  timestamp = {Thu, 02 Apr 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/sttt/MenagerKRI16.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KajanHKMR14,
  author    = {L{\'{a}}szl{\'{o}} Kaj{\'{a}}n and
               Thomas A. Hopf and
               Mat{\'{u}} Kala and
               Debora S. Marks and
               Burkhard Rost},
  title     = {FreeContact: fast and free software for protein contact prediction
               from residue co-evolution},
  journal   = {{BMC} Bioinform.},
  volume    = {15},
  pages     = {85},
  year      = {2014},
  url       = {https://doi.org/10.1186/1471-2105-15-85},
  doi       = {10.1186/1471-2105-15-85},
  timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/journals/bmcbi/KajanHKMR14.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MollerABBBCCGHHKKKPPQSSSSSSSTTGKC14,
  author    = {Steffen M{\"{o}}ller and
               Enis Afgan and
               Michael Banck and
               Raoul Jean Pierre Bonnal and
               Timothy Booth and
               John Chilton and
               Peter J. A. Cock and
               Markus Gumbel and
               Nomi L. Harris and
               Richard C. G. Holland and
               Mat{\'{u}}s Kalas and
               L{\'{a}}szl{\'{o}} Kaj{\'{a}}n and
               Eri Kibukawa and
               David R. Powell and
               Pjotr Prins and
               Jacqueline Quinn and
               Olivier Sallou and
               Francesco Strozzi and
               Torsten Seemann and
               Clare Sloggett and
               Stian Soiland{-}Reyes and
               William Spooner and
               Sascha Steinbiss and
               Andreas Tille and
               Anthony J. Travis and
               Roman Guimera and
               Toshiaki Katayama and
               Brad A. Chapman},
  title     = {Community-driven development for computational biology at Sprints,
               Hackathons and Codefests},
  journal   = {{BMC} Bioinform.},
  volume    = {15},
  number    = {{S-14}},
  pages     = {S7},
  year      = {2014},
  url       = {https://doi.org/10.1186/1471-2105-15-S14-S7},
  doi       = {10.1186/1471-2105-15-S14-S7},
  timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/journals/bmcbi/MollerABBBCCGHHKKKPPQSSSSSSSTTGKC14.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IsonKJBUMMLPR13,
  author    = {Jon C. Ison and
               Mat{\'{u}}s Kalas and
               Inge Jonassen and
               Dan M. Bolser and
               Mahmut Uludag and
               Hamish McWilliam and
               James Malone and
               Rodrigo Lopez and
               Steve Pettifer and
               Peter M. Rice},
  title     = {{EDAM:} an ontology of bioinformatics operations, types of data and
               identifiers, topics and formats},
  journal   = {Bioinform.},
  volume    = {29},
  number    = {10},
  pages     = {1325--1332},
  year      = {2013},
  url       = {https://doi.org/10.1093/bioinformatics/btt113},
  doi       = {10.1093/bioinformatics/btt113},
  timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/journals/bioinformatics/IsonKJBUMMLPR13.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SandveGJGGHHLNNPRTCDFKLRFH13,
  author    = {Geir Kjetil Sandve and
               Sveinung Gundersen and
               Morten Johansen and
               Ingrid K. Glad and
               Krishanthi Gunathasan and
               Lars Holden and
               Marit Holden and
               Knut Liest{\o}l and
               St{\aa}le Nyg{\aa}rd and
               Vegard Nygaard and
               Jonas Paulsen and
               Halfdan Rydbeck and
               Kai Trengereid and
               Trevor Clancy and
               Finn Drabl{\o}s and
               Egil Ferkingstad and
               Mat{\'{u}}s Kalas and
               Tonje Lien and
               Morten Rye and
               Arnoldo Frigessi and
               Eivind Hovig},
  title     = {The Genomic HyperBrowser: an analysis web server for genome-scale
               data},
  journal   = {Nucleic Acids Res.},
  volume    = {41},
  number    = {Webserver-Issue},
  pages     = {133--141},
  year      = {2013},
  url       = {https://doi.org/10.1093/nar/gkt342},
  doi       = {10.1093/nar/gkt342},
  timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/journals/nar/SandveGJGGHHLNNPRTCDFKLRFH13.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GundersenKAFHS11,
  author    = {Sveinung Gundersen and
               Mat{\'{u}}s Kalas and
               Osman Abul and
               Arnoldo Frigessi and
               Eivind Hovig and
               Geir Kjetil Sandve},
  title     = {Identifying elemental genomic track types and representing them uniformly},
  journal   = {{BMC} Bioinform.},
  volume    = {12},
  pages     = {494},
  year      = {2011},
  url       = {https://doi.org/10.1186/1471-2105-12-494},
  doi       = {10.1186/1471-2105-12-494},
  timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/journals/bmcbi/GundersenKAFHS11.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KalasPJBTVPBIBRJ10,
  author    = {Mat{\'{u}}s Kalas and
               P{\aa}l Puntervoll and
               Alexandre Joseph and
               Edita Bartaseviciute and
               Armin T{\"{o}}pfer and
               Prabakar Venkataraman and
               Steve Pettifer and
               Jan Christian Bryne and
               Jon C. Ison and
               Christophe Blanchet and
               Kristoffer Rapacki and
               Inge Jonassen},
  title     = {BioXSD: the common data-exchange format for everyday bioinformatics
               web services},
  journal   = {Bioinform.},
  volume    = {26},
  number    = {18},
  year      = {2010},
  url       = {https://doi.org/10.1093/bioinformatics/btq391},
  doi       = {10.1093/bioinformatics/btq391},
  timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/journals/bioinformatics/KalasPJBTVPBIBRJ10.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PettiferIKTMJLFRIPBURBRHSSCBSBACV10,
  author    = {Steve Pettifer and
               Jon C. Ison and
               Mat{\'{u}}s Kalas and
               Dave Thorne and
               Philip McDermott and
               Inge Jonassen and
               Ali Liaquat and
               Jos{\'{e}} Mar{\'{\i}}a Fern{\'{a}}ndez and
               Jose Manuel Rodriguez and
               David G. Pisano and
               Christophe Blanchet and
               Mahmut Uludag and
               Peter M. Rice and
               Edita Bartaseviciute and
               Kristoffer Rapacki and
               Maarten L. Hekkelman and
               Olivier Sand and
               Heinz Stockinger and
               Andrew B. Clegg and
               Erik Bongcam{-}Rudloff and
               Jean Salzemann and
               Vincent Breton and
               Teresa K. Attwood and
               Graham Cameron and
               Gert Vriend},
  title     = {The {EMBRACE} web service collection},
  journal   = {Nucleic Acids Res.},
  volume    = {38},
  number    = {Web-Server-Issue},
  pages     = {683--688},
  year      = {2010},
  url       = {https://doi.org/10.1093/nar/gkq297},
  doi       = {10.1093/nar/gkq297},
  timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/journals/nar/PettiferIKTMJLFRIPBURBRHSSCBSBACV10.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
a service of Schloss Dagstuhl - Leibniz Center for Informatics