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Peter D. Vize
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2020 – today
- 2022
- [j16]Malcolm E. Fisher, Erik Segerdell, Nicolas Matentzoglu, Mardi J. Nenni, Joshua D. Fortriede, Stanley Chu, Troy J. Pells, David Osumi-Sutherland, Praneet Chaturvedi, Christina James-Zorn, Nivitha Sundararaj, Vaneet S. Lotay, Virgilio Ponferrada, Dong Zhuo Wang, Eugene Kim, Sergei Agalakov, Bradley I. Arshinoff, Kamran Karimi, Peter D. Vize, Aaron M. Zorn:
The Xenopus phenotype ontology: bridging model organism phenotype data to human health and development. BMC Bioinform. 23(1): 99 (2022) - [j15]Bradley I. Arshinoff, Gregory A. Cary, Kamran Karimi, Saoirse Foley, Sergei Agalakov, Francisco Delgado, Vaneet S. Lotay, Carolyn Ku, Troy J. Pells, Thomas R. Beatman, Eugene Kim, R. Andrew Cameron, Peter D. Vize, Cheryl A. Telmer, Jenifer C. Croce, Charles A. Ettensohn, Veronica F. Hinman:
Echinobase: leveraging an extant model organism database to build a knowledgebase supporting research on the genomics and biology of echinoderms. Nucleic Acids Res. 50(D1): 970-979 (2022) - 2021
- [j14]Saoirse Foley, Carolyn Ku, Brad Arshinoff, Vaneet Lotay, Kamran Karimi, Peter D. Vize, Veronica F. Hinman:
Integration of 1: 1 orthology maps and updated datasets into Echinobase. Database J. Biol. Databases Curation 2021 (2021) - [j13]Kamran Karimi, Sergei Agalakov, Cheryl A. Telmer, Thomas R. Beatman, Troy J. Pells, Bradley I. M. Arshinoff, Carolyn Ku, Saoirse Foley, Veronica F. Hinman, Charles A. Ettensohn, Peter D. Vize:
Classifying domain-specific text documents containing ambiguous keywords. Database J. Biol. Databases Curation 2021 (2021) - 2020
- [j12]Joshua D. Fortriede, Troy J. Pells, Stanley Chu, Praneet Chaturvedi, Dong Zhou Wang, Malcolm E. Fisher, Christina James-Zorn, Ying Wang, Mardi J. Nenni, Kevin A. Burns, Vaneet Lotay, Virgilio G. Ponferrada, Kamran Karimi, Aaron M. Zorn, Peter D. Vize:
Xenbase: deep integration of GEO & SRA RNA-seq and ChIP-seq data in a model organism database. Nucleic Acids Res. 48(Database-Issue): D776-D782 (2020)
2010 – 2019
- 2018
- [j11]Kamran Karimi, Joshua D. Fortriede, Vaneet Lotay, Kevin A. Burns, Dong Zhou Wang, Malcolm E. Fisher, Troy J. Pells, Christina James-Zorn, Ying Wang, Virgilio G. Ponferrada, Stanley Chu, Praneet Chaturvedi, Aaron M. Zorn, Peter D. Vize:
Xenbase: a genomic, epigenomic and transcriptomic model organism database. Nucleic Acids Res. 46(Database-Issue): D861-D868 (2018) - [c3]Troy J. Pells, Malcolm E. Fisher, Erik Segerdell, Joshua D. Fortriede, Kevin A. Burns, Stanley Chu, Praneet Chaturvedi, Christina James-Zorn, Vaneet Lotay, Mardi J. Nenni, Virgilio G. Ponferrada, Dong Zhou Wang, Ying Wang, Kamran Karimi, Peter D. Vize, Aaron M. Zorn:
Visualization of Gene Expression and Expression as a Phenotype with the XPO, XAO and DO using a Combination of Experimental Data Sources. ICBO 2018 - 2015
- [j10]J. Brad Karpinka, Joshua D. Fortriede, Kevin A. Burns, Christina James-Zorn, Virgilio G. Ponferrada, Jacqueline Lee, Kamran Karimi, Aaron M. Zorn, Peter D. Vize:
Xenbase, the Xenopus model organism database; new virtualized system, data types and genomes. Nucleic Acids Res. 43(Database-Issue): 756-763 (2015) - 2014
- [j9]Navneet Bhalla, Peter J. Bentley, Peter D. Vize, Christian Jacob:
Staging the Self-Assembly Process: Inspiration from Biological Development. Artif. Life 20(1): 29-53 (2014) - [j8]Kamran Karimi, Peter D. Vize:
The Virtual Xenbase: transitioning an online bioinformatics resource to a private cloud. Database J. Biol. Databases Curation 2014 (2014) - 2013
- [j7]Jeff B. Bowes, Kevin A. Snyder, Christina James-Zorn, Virgilio G. Ponferrada, Chris Jarabek, Kevin A. Burns, Bishnu Bhattacharyya, Aaron M. Zorn, Peter D. Vize:
The Xenbase literature curation process. Database J. Biol. Databases Curation 2013 (2013) - [j6]Erik Segerdell, Virgilio G. Ponferrada, Christina James-Zorn, Kevin A. Burns, Joshua D. Fortriede, Wasila M. Dahdul, Peter D. Vize, Aaron M. Zorn:
Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase. J. Biomed. Semant. 4: 31 (2013) - [j5]Christina James-Zorn, Virgilio G. Ponferrada, Chris Jarabek, Kevin A. Burns, Erik Segerdell, Jacqueline Lee, Kevin A. Snyder, Bishnu Bhattacharyya, J. Brad Karpinka, Joshua D. Fortriede, Jeff B. Bowes, Aaron M. Zorn, Peter D. Vize:
Xenbase: expansion and updates of the Xenopus model organism database. Nucleic Acids Res. 41(Database-Issue): 865-870 (2013) - 2012
- [j4]Navneet Bhalla, Peter J. Bentley, Peter D. Vize, Christian Jacob:
Programming and evolving physical self-assembling systems in three dimensions. Nat. Comput. 11(3): 475-498 (2012) - 2011
- [c2]Navneet Bhalla, Peter J. Bentley, Peter D. Vize, Christian Jacob:
Staging the self-assembly process using morphological information. ECAL 2011: 93-100 - 2010
- [j3]Jeff B. Bowes, Kevin A. Snyder, Erik Segerdell, Chris Jarabek, Kenan Azam, Aaron M. Zorn, Peter D. Vize:
Xenbase: gene expression and improved integration. Nucleic Acids Res. 38(Database-Issue): 607-612 (2010)
2000 – 2009
- 2008
- [j2]Jeff B. Bowes, Kevin A. Snyder, Erik Segerdell, Ross Gibb, Chris Jarabek, Etienne Noumen, Nicolas Pollet, Peter D. Vize:
Xenbase: a Xenopus biology and genomics resource. Nucleic Acids Res. 36(Database-Issue): 761-767 (2008) - 2005
- [j1]Victor E. Gerth, Peter D. Vize:
A Java tool for dynamic web-based 3D visualization of anatomy and overlapping gene or protein expression patterns. Bioinform. 21(7): 1278-1279 (2005) - 2003
- [c1]Victor E. Gerth, Peter D. Vize:
Interactive 3D gene expression viewer. SIGGRAPH Web Graphics 2003
Coauthor Index
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