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ORCIDKen Chen 0001
Person information
- affiliation: The University of Texas, MD Anderson Cancer Center, Houston, TX, USA
Other persons with the same name
- Ken Chen — disambiguation page
- Ken Chen 0002 — Tsinghua University, Department of Mechanical Engineering, Beijing, China
- Ken Chen 0003 — Ningbo University, Ningbo, China
- Ken Chen 0004 — University of Paris, Villetaneuse, France
- Ken Chen 0005
![[0000-0003-2569-0071]](https://dblp1.uni-trier.de/img/orcid-mark.12x12.png "0000-0003-2569-0071")
— Sichuan Railway Industry Investment Group Company Ltd., Chengdu, China - Ken Chen 0006 — Sun Yat-sen University, Guangzhou, China
- Ken Chen 0007 — Chinese Academy of Sciences, Shenzhen Institute of Advanced Technology, Shenzhen, China
- Ken Chen 0008 — North Carolina State University, Raleigh, NC, USA
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Journal Articles
- 2022
[j18]Shaoheng Liang, Jason Willis, Jinzhuang Dou, Vakul Mohanty, Yuefan Huang, Eduardo Vilar, Ken Chen:
Sensei: how many samples to tell a change in cell type abundance? BMC Bioinform. 23(1): 2 (2022)- 2021
- [j17]Shaoheng Liang, Vakul Mohanty, Jinzhuang Dou, Qi Miao, Yuefan Huang, Muharrem Müftüoglu, Li Ding, Weiyi Peng, Ken Chen:
Single-cell manifold-preserving feature selection for detecting rare cell populations. Nat. Comput. Sci. 1(5): 374-384 (2021) - [j16]Shaoheng Liang, Vakul Mohanty, Jinzhuang Dou, Qi Miao, Yuefan Huang, Muharrem Müftüoglu, Li Ding, Weiyi Peng, Ken Chen:
Publisher Correction: Single-cell manifold-preserving feature selection for detecting rare cell populations. Nat. Comput. Sci. 1(6): 448 (2021) - [j15]Shaoheng Liang, Qingnan Liang, Rui Chen, Ken Chen:
Stratified Test Accurately Identifies Differentially Expressed Genes Under Batch Effects in Single-Cell Data. IEEE ACM Trans. Comput. Biol. Bioinform. 18(6): 2072-2079 (2021) - 2019
- [j14]Fang Wang, Shaoheng Liang, Tapsi Kumar, Nicholas Navin, Ken Chen:
SCMarker: Ab initio marker selection for single cell transcriptome profiling. PLoS Comput. Biol. 15(10) (2019) - 2017
- [j13]Matthew A. Wyczalkowski, Kristine M. Wylie, Song Cao, Michael D. McLellan, Jennifer Flynn, Mo Huang, Kai Ye, Xian Fan, Ken Chen, Michael C. Wendl, Li Ding:
BreakPoint Surveyor: a pipeline for structural variant visualization. Bioinform. 33(19): 3121-3122 (2017) - 2015
- [j12]Malachi Griffith, Obi L. Griffith, Scott M. Smith, Avinash Ramu, Matthew B. Callaway, Anthony M. Brummett, Michael J. Kiwala, Adam C. Coffman, Allison A. Regier, Benjamin J. Oberkfell, Gabriel E. Sanderson, Thomas P. Mooney, Nathaniel G. Nutter, Edward A. Belter, Feiyu Du, Robert L. Long, Travis E. Abbott, Ian T. Ferguson, David L. Morton, Mark M. Burnett, James V. Weible, Joshua B. Peck, Adam Dukes, Joshua F. McMichael, Justin T. Lolofie, Brian R. Derickson, Jasreet Hundal, Zachary L. Skidmore, Benjamin J. Ainscough, Nathan D. Dees, William S. Schierding, Cyriac Kandoth, Kyung H. Kim, Charles Lu, Christopher C. Harris, Nicole Maher, Christopher A. Maher, Vincent J. Magrini, Benjamin S. Abbott, Ken Chen, Eric Clark, Indraniel Das, Xian Fan, Amy E. Hawkins, Todd G. Hepler, Todd N. Wylie, Shawn M. Leonard, William E. Schroeder, Xiaoqi Shi, Lynn K. Carmichael, Matthew R. Weil, Richard W. Wohlstadter, Gary Stiehr, Michael D. McLellan, Craig S. Pohl, Christopher A. Miller, Daniel C. Koboldt, Jason R. Walker, James M. Eldred, David E. Larson, David J. Dooling, Li Ding, Elaine R. Mardis, Richard K. Wilson:
Genome Modeling System: A Knowledge Management Platform for Genomics. PLoS Comput. Biol. 11(7) (2015) - 2014
- [j11]Wanding Zhou, Tenghui Chen, Hao Zhao, Agda Karina Eterovic, Funda Meric-Bernstam, Gordon B. Mills, Ken Chen:
Bias from removing read duplication in ultra-deep sequencing experiments. Bioinform. 30(8): 1073-1080 (2014) - [j10]Xian Fan, Wanding Zhou, Zechen Chong, Luay Nakhleh, Ken Chen:
Towards accurate characterization of clonal heterogeneity based on structural variation. BMC Bioinform. 15: 299 (2014) - 2012
- [j9]David E. Larson, Christopher C. Harris, Ken Chen, Daniel C. Koboldt, Travis E. Abbott, David J. Dooling, Timothy J. Ley, Elaine R. Mardis, Richard K. Wilson, Li Ding:
SomaticSniper: identification of somatic point mutations in whole genome sequencing data. Bioinform. 28(3): 311-317 (2012) - [j8]Ken Chen, John W. Wallis, Cyriac Kandoth, Joelle M. Kalicki-Veizer, Karen L. Mungall, Andrew J. Mungall, Steven J. M. Jones, Marco A. Marra, Timothy J. Ley, Elaine R. Mardis, Richard K. Wilson, John N. Weinstein, Li Ding:
BreakFusion: targeted assembly-based identification of gene fusions in whole transcriptome paired-end sequencing data. Bioinform. 28(14): 1923-1924 (2012) - 2010
- [j7]Qunyuan Zhang, Li Ding, David E. Larson, Daniel C. Koboldt, Michael D. McLellan, Ken Chen, Xiaoqi Shi, Aldi T. Kraja, Elaine R. Mardis, Richard K. Wilson, Ingrid B. Borecki, Michael A. Province:
CMDS: a population-based method for identifying recurrent DNA copy number aberrations in cancer from high-resolution data. Bioinform. 26(4): 464-469 (2010) - 2009
- [j6]Daniel C. Koboldt, Ken Chen, Todd Wylie, David E. Larson, Michael D. McLellan, Elaine R. Mardis, George M. Weinstock, Richard K. Wilson, Li Ding:
VarScan: variant detection in massively parallel sequencing of individual and pooled samples. Bioinform. 25(17): 2283-2285 (2009) - 2007
- [j5]William A. McLaughlin, Ken Chen, Tingjun Hou, Wei Wang:
On the detection of functionally coherent groups of protein domains with an extension to protein annotation. BMC Bioinform. 8 (2007) - 2006
- [j4]Tingjun Hou, Ken Chen, William A. McLaughlin, Benzhuo Lu, Wei Wang:
Computational Analysis and Prediction of the Binding Motif and Protein Interacting Partners of the Abl SH3 Domain. PLoS Comput. Biol. 2(1) (2006) - [j3]Ken Chen, Mark Hasegawa-Johnson, Aaron Cohen, Sarah Borys, Sung-Suk Kim, Jennifer Cole, Jeung-Yoon Choi:
Prosody dependent speech recognition on radio news corpus of American English. IEEE Trans. Speech Audio Process. 14(1): 232-245 (2006) - 2005
- [j2]Mark Hasegawa-Johnson, Ken Chen, Jennifer Cole, Sarah Borys, Sung-Suk Kim, Aaron Cohen, Tong Zhang, Jeung-Yoon Choi, Heejin Kim, Taejin Yoon:
Simultaneous recognition of words and prosody in the Boston University Radio Speech Corpus. Speech Commun. 46(3-4): 418-439 (2005) - 2004
- [j1]Sung-Suk Kim, Mark Hasegawa-Johnson, Ken Chen:
Automatic recognition of pitch movements using multilayer perceptron and time-Delay Recursive neural network. IEEE Signal Process. Lett. 11(7): 645-648 (2004)
Conference and Workshop Papers
- 2020
- [c8]Shaoheng Liang, Qingnan Liang, Rui Chen, Ken Chen:
Stratified Test Alleviates Batch Effects in Single-Cell Data. AlCoB 2020: 167-177 - 2015
- [c7]Ken Chen, Ping Liao, Fang Wang, Yuchuan Wang, Pengfei Xiao:
Research on Collaborative Visualization Application of Dynamic Monitoring Figure Spot. Smart Graphics 2015: 99-107 - 2013
- [c6]Xian Fan, Luay Nakhleh, Ken Chen:
Integrated genotyping of structural variation. GlobalSIP 2013: 47-48 - 2005
- [c5]Mark Hasegawa-Johnson, James Baker, Sarah Borys, Ken Chen, Emily Coogan, Steven Greenberg, Amit Juneja, Katrin Kirchhoff, Karen Livescu, Srividya Mohan, Jennifer Muller, M. Kemal Sönmez, Tianyu Wang:
Landmark-Based Speech Recognition: Report of the 2004 Johns Hopkins Summer Workshop. ICASSP (1) 2005: 213-216 - 2004
- [c4]Ken Chen, Mark Hasegawa-Johnson, Aaron Cohen:
An automatic prosody labeling system using ANN-based syntactic-prosodic model and GMM-based acoustic-prosodic model. ICASSP (1) 2004: 509-512 - [c3]Ken Chen, Mark Hasegawa-Johnson:
Modeling pronunciation variation using artificial neural networks for English spontaneous speech. INTERSPEECH 2004: 1461-1464 - 2003
- [c2]Ken Chen, Sarah Borys, Mark Hasegawa-Johnson, Jennifer Cole:
Prosody dependent speech recognition with explicit duration modelling at intonational phrase boundaries. INTERSPEECH 2003: 393-396 - 2002
- [c1]Mohamed Kamal Omar, Ken Chen, Mark Hasegawa-Johnson, Yigal Brandman:
An evaluation of using mutual information for selection of acoustic-features representation of phonemes for speech recognition. INTERSPEECH 2002: 2129-2132
Coauthor Index
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