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Mong-Hsun Tsai
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2020 – today
- 2024
- [j17]Zhao-Qi Hu, Yuan-Mao Hung, Li-Han Chen, Liang-Chuan Lai, Min-Hsiung Pan, Eric Y. Chuang, Mong-Hsun Tsai:
NURECON: A Novel Online System for Determining Nutrition Requirements Based on Microbial Composition. IEEE ACM Trans. Comput. Biol. Bioinform. 21(2): 254-264 (2024) - 2023
- [j16]Amrita Chattopadhyay, Chien-Yueh Lee, Ying-Cheng Shen, Kuan-Chen Lu, Tzu-Hung Hsiao, Ching-Heng Lin, Liang-Chuan Lai, Mong-Hsun Tsai, Tzu-Pin Lu, Eric Y. Chuang:
Multi-ethnic Imputation System (MI-System): A genotype imputation server for high-dimensional data. J. Biomed. Informatics 143: 104423 (2023) - 2022
- [j15]Yuan-Mao Hung, Wei-Ni Lyu, Ming-Lin Tsai, Chiang-Lin Liu, Liang-Chuan Lai, Mong-Hsun Tsai, Eric Y. Chuang:
To compare the performance of prokaryotic taxonomy classifiers using curated 16S full-length rRNA sequences. Comput. Biol. Medicine 145: 105416 (2022) - [j14]Yu-Peng Hsieh, Yuan-Mao Hung, Mong-Hsun Tsai, Liang-Chuan Lai, Eric Y. Chuang:
16S-ITGDB: An Integrated Database for Improving Species Classification of Prokaryotic 16S Ribosomal RNA Sequences. Frontiers Bioinform. 2 (2022) - 2021
- [j13]Yuan-Mao Hung, Mong-Hsun Tsai, Liang-Chuan Lai, Eric Y. Chuang:
ATTRACTIVE - An Auto-Updating Database for Experimental Protocols in Regenerative Medicine. IEEE Access 9: 75202-75210 (2021) - [j12]Nam Nhut Phan, Amrita Chattopadhyay, Tsui-Ting Lee, Hsiang-I Yin, Tzu-Pin Lu, Liang-Chuan Lai, Hsiao-Lin Hwa, Mong-Hsun Tsai, Eric Y. Chuang:
High-performance deep learning pipeline predicts individuals in mixtures of DNA using sequencing data. Briefings Bioinform. 22(6) (2021) - [j11]Amrita Chattopadhyay, Zi Han Teoh, Chi-Yun Wu, Jyh-Ming Jimmy Juang, Liang-Chuan Lai, Mong-Hsun Tsai, Chia-Hsin Wu, Tzu-Pin Lu, Eric Y. Chuang:
CNVIntegrate: the first multi-ethnic database for identifying copy number variations associated with cancer. Database J. Biol. Databases Curation 2021 (2021) - [j10]Kuan-Hao Chao, Yi-Wen Hsiao, Yi-Fang Lee, Chien-Yueh Lee, Liang-Chuan Lai, Mong-Hsun Tsai, Tzu-Pin Lu, Eric Y. Chuang:
RNASeqR: An R Package for Automated Two-Group RNA-Seq Analysis Workflow. IEEE ACM Trans. Comput. Biol. Bioinform. 18(5): 2023-2031 (2021)
2010 – 2019
- 2019
- [j9]Chien-Yueh Lee, Amrita Chattopadhyay, Li-Mei Chiang, Jyh-Ming Jimmy Juang, Liang-Chuan Lai, Mong-Hsun Tsai, Tzu-Pin Lu, Eric Y. Chuang:
VariED: the first integrated database of gene annotation and expression profiles for variants related to human diseases. Database J. Biol. Databases Curation 2019: baz075 (2019) - [j8]Ti-Tai Wang, Chien-Yueh Lee, Liang-Chuan Lai, Mong-Hsun Tsai, Tzu-Pin Lu, Eric Y. Chuang:
anamiR: integrated analysis of MicroRNA and gene expression profiling. BMC Bioinform. 20(1): 239:1-239:7 (2019) - 2018
- [j7]Yi-Fang Lee, Chien-Yueh Lee, Liang-Chuan Lai, Mong-Hsun Tsai, Tzu-Pin Lu, Eric Y. Chuang:
CellExpress: a comprehensive microarray-based cancer cell line and clinical sample gene expression analysis online system. Database J. Biol. Databases Curation 2018: bax101 (2018) - 2017
- [j6]Yi-Pin Lai, Liang-Bo Wang, Wei-An Wang, Liang-Chuan Lai, Mong-Hsun Tsai, Tzu-Pin Lu, Eric Y. Chuang:
iGC - an integrated analysis package of gene expression and copy number alteration. BMC Bioinform. 18(1): 35:1-35:9 (2017) - 2013
- [j5]Hsueh-Ting Chu, William W. L. Hsiao, Jen-Chih Chen, Tze-Jung Yeh, Mong-Hsun Tsai, Han Lin, Yen-Wenn Liu, Sheng-An Lee, Chaur-Chin Chen, Theresa Tsao, Cheng-Yan Kao:
EBARDenovo: highly accurate de novo assembly of RNA-Seq with efficient chimera-detection. Bioinform. 29(8): 1004-1010 (2013) - [j4]Pei-Chun Chen, Tzu-Pin Lu, Jung-Chih Chang, Liang-Chuan Lai, Mong-Hsun Tsai, Chuhsing Kate Hsiao, Eric Y. Chuang:
Concurrent analysis of copy number variation and gene expression: application in paired non-smoking female lung cancer patients. Int. J. Data Min. Bioinform. 8(1): 92-104 (2013) - 2011
- [j3]Hsien-Chi Kuo, Po-Yu Lin, Ting-Chiun Chung, Chin-Mei Chao, Liang-Chuan Lai, Mong-Hsun Tsai, Eric Y. Chuang:
DBCAT: Database of CpG Islands and Analytical Tools for Identifying Comprehensive Methylation Profiles in Cancer Cells. J. Comput. Biol. 18(8): 1013-1017 (2011) - 2010
- [c4]Jo-Yang Lu, Eric Y. Chuang, Chuhsing Kate Hsiao, Mong-Hsun Tsai, Liang-Chuan Lai, Pei-Chun Chen:
Utilizing Cox regression model to assess the relations between predefined gene sets and the survival outcome of lung adenocarcinoma. BIBM 2010: 218-221 - [c3]Tzu-Pin Lu, Liang-Chuan Lai, Chuhsing Kate Hsiao, Pei-Chun Chen, Mong-Hsun Tsai, Eric Y. Chuang:
Concurrent analysis of copy number variations and expression profiles to identify genes associated with tumorigenesis and survival outcome in lung adenocarcinoma. BIBM 2010: 284-289 - [c2]Lee H. Chen, Liang-Chuan Lai, Chuhsing Kate Hsiao, Pei-Chun Chen, Mong-Hsun Tsai, Wen-Hung Kuo, King-Jen Chang, Eric Y. Chuang:
Comparison of triple negative breast cancer between Asian and western data sets. BIBM Workshops 2010: 489-493 - [c1]Jung-Chih Chang, Tzu-Pin Lu, Eric Y. Chuang, Liang-Chuan Lai, Mong-Hsun Tsai, Chuhsing Kate Hsiao, Pei-Chun Chen:
Concurrent analysis of copy number variation and gene expression: Application in paired non-smoking female lung cancer patients. BIBM 2010: 599-602
2000 – 2009
- 2008
- [j2]Hung-I Harry Chen, Fang-Han Hsu, Yuan Jiang, Mong-Hsun Tsai, Pan-Chyr Yang, Paul S. Meltzer, Eric Y. Chuang, Yidong Chen:
A probe-density-based analysis method for array CGH data: simulation, normalization and centralization. Bioinform. 24(16): 1749-1756 (2008) - [j1]Hung-I Harry Chen, Fang-Han Hsu, Yuan Jiang, Mong-Hsun Tsai, Pan-Chyr Yang, Paul S. Meltzer, Eric Y. Chuang, Yidong Chen:
A probe-density-based analysis method for array CGH data: simulation, normalization and centralization. Bioinform. 24(19): 2276 (2008)
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