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Rhiju Das
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2020 – today
- 2022
- [j14]Hannah K. Wayment-Steele
, Wipapat Kladwang, Andrew M. Watkins, Do Soon Kim, Bojan Tunguz, Walter Reade
, Maggie Demkin, Jonathan Romano
, Roger Wellington-Oguri, John J. Nicol, Jiayang Gao
, Kazuki Onodera, Kazuki Fujikawa
, Hanfei Mao
, Gilles Vandewiele
, Michele Tinti
, Bram Steenwinckel, Takuya Ito, Taiga Noumi, Shujun He
, Keiichiro Ishi, Youhan Lee, Fatih Öztürk, King Yuen Chiu
, Emin Öztürk, Karim Amer, Mohamed Fares
, Rhiju Das
:
Deep learning models for predicting RNA degradation via dual crowdsourcing. Nat. Mac. Intell. 4(12): 1174-1184 (2022) - 2021
- [i3]Hannah K. Wayment-Steele, Wipapat Kladwang, Andrew M. Watkins, Do Soon Kim, Bojan Tunguz, Walter Reade, Maggie Demkin, Jonathan Romano
, Roger Wellington-Oguri, John J. Nicol, Jiayang Gao, Kazuki Onodera, Kazuki Fujikawa, Hanfei Mao, Gilles Vandewiele, Michele Tinti, Bram Steenwinckel, Takuya Ito, Taiga Noumi, Shujun He, Keiichiro Ishi, Youhan Lee, Fatih Öztürk, Anthony Chiu, Emin Öztürk, Karim Amer, Mohamed Fares, Eterna Participants, Rhiju Das:
Predictive models of RNA degradation through dual crowdsourcing. CoRR abs/2110.07531 (2021)
2010 – 2019
- 2019
- [j13]Marcin Magnus
, Kalli Kappel
, Rhiju Das
, Janusz M. Bujnicki:
RNA 3D structure prediction guided by independent folding of homologous sequences. BMC Bioinform. 20(1): 512:1-512:15 (2019) - [j12]Rohan V. Koodli, Benjamin Keep
, Katherine R. Coppess, Fernando Portela
, Rhiju Das
:
EternaBrain: Automated RNA design through move sets and strategies from an Internet-scale RNA videogame. PLoS Comput. Biol. 15(6) (2019) - 2018
- [j11]Joseph D. Yesselman, Siqi Tian, Xin Liu
, Lei Shi, Jin Billy Li, Rhiju Das
:
Updates to the RNA mapping database (RMDB), version 2. Nucleic Acids Res. 46(Database-Issue): D375-D379 (2018) - [i2]Jade Shi, Rhiju Das, Vijay S. Pande:
SentRNA: Improving computational RNA design by incorporating a prior of human design strategies. CoRR abs/1803.03146 (2018) - 2017
- [j10]Siqi Tian, Rhiju Das:
Primerize-2D: automated primer design for RNA multidimensional chemical mapping. Bioinform. 33(9): 1405-1406 (2017) - 2015
- [j9]Seungmyung Lee, Hanjoo Kim, Siqi Tian, Taehoon Lee, Sungroh Yoon, Rhiju Das
:
Automated band annotation for RNA structure probing experiments with numerous capillary electrophoresis profiles. Bioinform. 31(17): 2808-2815 (2015) - [j8]Joseph D. Yesselman, Rhiju Das
:
RNA-Redesign: a web server for fixed-backbone 3D design of RNA. Nucleic Acids Res. 43(Webserver-Issue): W498-W501 (2015) - [j7]Siqi Tian, Joseph D. Yesselman, Pablo Cordero, Rhiju Das
:
Primerize: automated primer assembly for transcribing non-coding RNA domains. Nucleic Acids Res. 43(Webserver-Issue): W522-W526 (2015) - [j6]Pablo Cordero, Rhiju Das
:
Rich RNA Structure Landscapes Revealed by Mutate-and-Map Analysis. PLoS Comput. Biol. 11(11) (2015) - 2014
- [j5]Fang-Chieh Chou, Jan Lipfert
, Rhiju Das
:
Blind Predictions of DNA and RNA Tweezers Experiments with Force and Torque. PLoS Comput. Biol. 10(8) (2014) - 2013
- [j4]Hanjoo Kim, Pablo Cordero, Rhiju Das
, Sungroh Yoon:
HiTRACE-Web: an online tool for robust analysis of high-throughput capillary electrophoresis. Nucleic Acids Res. 41(Webserver-Issue): 492-498 (2013) - 2012
- [j3]Pablo Cordero, Julius B. Lucks, Rhiju Das
:
An RNA Mapping DataBase for curating RNA structure mapping experiments. Bioinform. 28(22): 3006-3008 (2012) - 2011
- [j2]Sungroh Yoon, Jinkyu Kim, Justine Hum, Hanjoo Kim, Seunghyun Park, Wipapat Kladwang, Rhiju Das
:
HiTRACE: high-throughput robust analysis for capillary electrophoresis. Bioinform. 27(13): 1798-1805 (2011) - [i1]Pablo Cordero, Julius B. Lucks, Rhiju Das:
The Stanford RNA Mapping Database for sharing and visualizing RNA structure mapping experiments. CoRR abs/1110.0235 (2011)
2000 – 2009
- 2009
- [j1]Jinkyu Kim, Seunghak Yu, Byonghyo Shim
, Hanjoo Kim, Hyeyoung Min, Eui-Young Chung, Rhiju Das
, Sungroh Yoon:
A robust peak detection method for RNA structure inference by high-throughput contact mapping. Bioinform. 25(9): 1137-1144 (2009) - 2007
- [c1]Ben Blum, Michael I. Jordan, David E. Kim, Rhiju Das, Philip Bradley, David Baker:
Feature Selection Methods for Improving Protein Structure Prediction with Rosetta. NIPS 2007: 137-144
Coauthor Index
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