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Journal Articles
- 2008
[j6]Blake G. Fitch, Aleksandr Rayshubskiy, Maria Eleftheriou, T. J. Christopher Ward, Mark Giampapa, Michael Pitman, Jed W. Pitera, William C. Swope, Robert S. Germain:
Blue Matter: Scaling of N-body simulations to one atom per node. IBM J. Res. Dev. 52(1-2): 145-158 (2008)- 2006
- [j5]John D. Chodera, William C. Swope, Jed W. Pitera, Ken A. Dill:
Long-Time Protein Folding Dynamics from Short-Time Molecular Dynamics Simulations. Multiscale Model. Simul. 5(4): 1214-1226 (2006) - 2005
- [j4]Robert F. Enenkel, Blake G. Fitch, Robert S. Germain, Fred G. Gustavson, A. Martin, Mark P. Mendell, Jed W. Pitera, Michael Pitman, Aleksandr Rayshubskiy, Frank Suits
, William C. Swope, T. J. Christopher Ward:
Custom math functions for molecular dynamics. IBM J. Res. Dev. 49(2-3): 465-474 (2005) - [j3]Frank Suits, Michael Pitman, Jed W. Pitera, William C. Swope, Robert S. Germain:
Overview of molecular dynamics techniques and early scientific results from the Blue Gene project. IBM J. Res. Dev. 49(2-3): 475-488 (2005) - 2003
- [j2]Blake G. Fitch, Robert S. Germain, Mark P. Mendell, Jed W. Pitera, Michael Pitman, Aleksandr Rayshubskiy, Yuk Yin Sham, Frank Suits, William C. Swope, T. J. Christopher Ward, Yuriy Zhestkov, Ruhong Zhou:
Blue Matter, an application framework for molecular simulation on Blue Gene. J. Parallel Distributed Comput. 63(7-8): 759-773 (2003) - 2001
- [j1]Frances E. Allen, George S. Almási, Wanda Andreoni, Daniel K. Beece, Bruce J. Berne, Arthur A. Bright, José R. Brunheroto, Calin Cascaval, José G. Castaños, Paul Coteus, Paul Crumley, Alessandro Curioni, Monty Denneau, Wilm E. Donath, Maria Eleftheriou, Blake G. Fitch, Bruce M. Fleischer, Christos J. Georgiou, Robert S. Germain, Mark Giampapa, Donna L. Gresh, Manish Gupta, Ruud A. Haring, C. T. Howard Ho, Peter H. Hochschild, Susan Flynn Hummel, Tiziana Jonas, Derek Lieber, Glenn J. Martyna, Kiran K. Maturu, José E. Moreira, Dennis M. Newns, Matthew Newton, Robert Philhower, Thomas Picunko, Jed W. Pitera, Michael Pitman, Rick A. Rand, Ajay K. Royyuru, Valentina Salapura, Alda Sanomiya, Rahul S. Shah, Yuk Yin Sham, Sarabjeet Singh, Marc Snir, Frank Suits, Richard A. Swetz, William C. Swope, Nagesh K. Vishnumurthy, T. J. Christopher Ward, Henry S. Warren Jr., Ruhong Zhou:
Blue Gene: A vision for protein science using a petaflop supercomputer. IBM Syst. J. 40(2): 310-327 (2001)
Conference and Workshop Papers
- 2020
- [c6]Pingjie Tang, Meng Jiang, Bryan (Ning) Xia, Jed W. Pitera, Jeffrey Welser, Nitesh V. Chawla:
Multi-Label Patent Categorization with Non-Local Attention-Based Graph Convolutional Network. AAAI 2020: 9024-9031 - [c5]Seiji Takeda, Toshiyuki Hama, Hsiang-Han Hsu, Victoria A. Piunova, Dmitry Zubarev, Daniel P. Sanders, Jed W. Pitera, Makoto Kogoh, Takumi Hongo, Yenwei Cheng, Wolf Bocanett, Hideaki Nakashika, Akihiro Fujita, Yuta Tsuchiya, Katsuhiko Hino, Kentaro Yano, Shuichi Hirose, Hiroki Toda, Yasumitsu Orii, Daiju Nakano:
Molecular Inverse-Design Platform for Material Industries. KDD 2020: 2961-2969 - 2017
- [c4]Pingjie Tang, Jed Pitera, Dmitry Zubarev, Nitesh V. Chawla:
Materials Science Literature-Patent Relevance Search: A Heterogeneous Network Analysis Approach. DSAA 2017: 146-154 - 2009
- [c3]Patrick Groeneveld, Rob A. Rutenbar, Jed W. Pitera, Erik C. Carlson, Jinsong Chen:
Oil fields, hedge funds, and drugs. DAC 2009: 416-417 - 2006
- [c2]Blake G. Fitch, Aleksandr Rayshubskiy, Maria Eleftheriou, T. J. Christopher Ward, Mark Giampapa, Yuriy Zhestkov, Michael Pitman, Frank Suits, Alan Grossfield, Jed W. Pitera, William C. Swope, Ruhong Zhou, Scott Feller, Robert S. Germain:
Blue Matter: Strong Scaling of Molecular Dynamics on Blue Gene/L. International Conference on Computational Science (2) 2006: 846-854 - [c1]Maria Eleftheriou, Aleksandr Rayshubskiy, Jed W. Pitera, Blake G. Fitch, Ruhong Zhou, Robert S. Germain:
Parallel implementation of the replica exchange molecular dynamics algorithm on Blue Gene/L. IPDPS 2006
Informal and Other Publications
- 2020
- [i2]Seiji Takeda, Toshiyuki Hama, Hsiang-Han Hsu, Toshiyuki Yamane, Koji Masuda, Victoria A. Piunova, Dmitry Zubarev, Jed Pitera, Daniel P. Sanders, Daiju Nakano:
AI-driven Inverse Design System for Organic Molecules. CoRR abs/2001.09038 (2020) - [i1]Seiji Takeda, Toshiyuki Hama, Hsiang-Han Hsu, Victoria A. Piunova, Dmitry Zubarev, Daniel P. Sanders, Jed W. Pitera, Makoto Kogoh, Takumi Hongo, Yenwei Cheng, Wolf Bocanett, Hideaki Nakashika, Akihiro Fujita, Yuta Tsuchiya, Katsuhiko Hino, Kentaro Yano, Shuichi Hirose, Hiroki Toda, Yasumitsu Orii, Daiju Nakano:
Molecular Inverse-Design Platform for Material Industries. CoRR abs/2004.11521 (2020)
Coauthor Index
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