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ORCIDManuel Rueda
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2020 – today
- 2024
[j14]Ivo C. Leist, María Rivas-Torrubia, Marta E. Alarcón-Riquelme, Guillermo Barturen, Ivo Glynne Gut, Manuel Rueda:
Pheno-Ranker: a toolkit for comparison of phenotypic data stored in GA4GH standards and beyond. BMC Bioinform. 25(1): 373 (2024)- [j13]Manuel Rueda
, Ivo C. Leist, Ivo Glynne Gut:
Convert-Pheno: A software toolkit for the interconversion of standard data models for phenotypic data. J. Biomed. Informatics 149: 104558 (2024) - 2022
- [j12]Dietmar Fernández-Orth, Manuel Rueda, Babita Singh, Mauricio Moldes, Aina Jene, Marta Ferri, Claudia Vasallo, Lauren A. Fromont, Arcadi Navarro, Jordi Rambla:
A quality control portal for sequencing data deposited at the European genome-phenome archive. Briefings Bioinform. 23(3) (2022) - [j11]Manuel Rueda, Roberto Ariosa, Mauricio Moldes, Jordi Rambla:
Beacon v2 Reference Implementation: a toolkit to enable federated sharing of genomic and phenotypic data. Bioinform. 38(19): 4656-4657 (2022) - [j10]Mallory Ann Freeberg, Lauren A. Fromont, Teresa D'altri, Anna Foix Romero, Jorge Izquierdo Ciges, Aina Jene, Giselle Kerry, Mauricio Moldes, Roberto Ariosa, Silvia Bahena, Daniel Barrowdale, Marcos Casado Barbero, Dietmar Fernández-Orth, Carles Garcia-Linares, Emilio Garcia-Rios, Frédéric Haziza, Bela Juhasz, Oscar Martinez Llobet, Gemma Milla, Anand Mohan, Manuel Rueda, Aravind Sankar, Dona Shaju, Ashutosh Shimpi, Babita Singh, Coline Thomas, Sabela de la Torre, Umuthan Uyan, Claudia Vasallo, Paul Flicek, Roderic Guigó, Arcadi Navarro, Helen E. Parkinson, Thomas M. Keane, Jordi Rambla:
The European Genome-phenome Archive in 2021. Nucleic Acids Res. 50(D1): 980-987 (2022)
2010 – 2019
- 2017
- [j9]Manuel Rueda, Ali Torkamani:
SG-ADVISER mtDNA: a web server for mitochondrial DNA annotation with data from 200 samples of a healthy aging cohort. BMC Bioinform. 18(1): 373:1-373:10 (2017) - [j8]Dawid Warszycki, Manuel Rueda, Stefan Mordalski, Kurt Kristiansen, Grzegorz Satala, Krzysztof Rataj, Zdzislaw Chilmonczyk, Ingebrigt Sylte, Ruben Abagyan, Andrzej J. Bojarski:
From Homology Models to a Set of Predictive Binding Pockets-a 5-HT1A Receptor Case Study. J. Chem. Inf. Model. 57(2): 311-321 (2017) - 2013
- [j7]Michela Candotti, Alberto Pérez, Carles Ferrer-Costa, Manuel Rueda, Tim Meyer, Josep Lluis Gelpí, Modesto Orozco:
Exploring Early Stages of the Chemical Unfolding of Proteins at the Proteome Scale. PLoS Comput. Biol. 9(12) (2013) - 2012
- [j6]Manuel Rueda, Maxim Totrov, Ruben Abagyan:
ALiBERO: Evolving a Team of Complementary Pocket Conformations Rather than a Single Leader. J. Chem. Inf. Model. 52(10): 2705-2714 (2012) - 2010
- [j5]Manuel Rueda, Vsevolod Katritch, Eugene Raush, Ruben Abagyan:
SimiCon: a web tool for protein-ligand model comparison through calculation of equivalent atomic contacts. Bioinform. 26(21): 2784-2785 (2010) - [j4]Manuel Rueda, Giovanni Bottegoni, Ruben Abagyan:
Recipes for the Selection of Experimental Protein Conformations for Virtual Screening. J. Chem. Inf. Model. 50(1): 186-193 (2010)
2000 – 2009
- 2009
- [j3]Jordi Camps, Oliver Carrillo, Agustí Emperador, Laura Orellana, Adam Hospital, Manuel Rueda, Damjan Cicin-Sain, Marco D'Abramo, Josep Lluis Gelpí, Modesto Orozco:
FlexServ: an integrated tool for the analysis of protein flexibility. Bioinform. 25(13): 1709-1710 (2009) - [j2]Manuel Rueda, Giovanni Bottegoni, Ruben Abagyan:
Consistent Improvement of Cross-Docking Results Using Binding Site Ensembles Generated with Elastic Network Normal Modes. J. Chem. Inf. Model. 49(3): 716-725 (2009) - 2007
- [j1]Manuel Rueda, Carles Ferrer-Costa, Tim Meyer, Alberto Pérez, Jordi Camps, Adam Hospital, Josep Lluis Gelpí, Modesto Orozco:
A consensus view of protein dynamics. Proc. Natl. Acad. Sci. USA 104(3): 796-801 (2007)
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