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Jonathan Cooper
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2020 – today
- 2023
- [j17]Michael Clerx, Michael T. Cooling, Jonathan Cooper, Alan Garny, Keri R. Moyle, David P. Nickerson
, Poul M. F. Nielsen, Hugh Sorby:
CellML 2.0.1. J. Integr. Bioinform. 20(1) (2023) - [c6]Corina Sas
, Yojana Lotankar
, Rosalind Adam
, Katherine J. Bradbury
, Jonathan Cooper
, Derek L. Hill
, Veronica Martinez
, Daniel Powell
:
"A Switch Went off in my Whole Body": Lived Experiences of Fatigue and Post-Exertional Malaise in Long Covid. CHI Extended Abstracts 2023: 15:1-15:7 - 2020
- [j16]Michael Clerx
, Michael T. Cooling
, Jonathan Cooper
, Alan Garny
, Keri R. Moyle
, David P. Nickerson
, Poul M. F. Nielsen
, Hugh Sorby
:
CellML 2.0. J. Integr. Bioinform. 17(2-3) (2020) - [j15]Fergus R. Cooper
, Ruth E. Baker
, Miguel O. Bernabeu
, Rafel Bordas
, Louise Bowler
, Alfonso Bueno-Orovio
, Helen M. Byrne
, Valentina Carapella
, Louie Cardone-Noott, Jonathan Cooper
, Sara Dutta, Benjamin D. Evans
, Alexander G. Fletcher
, James A. Grogan, Wenxian Guo
, Daniel G. Harvey, Maurice Hendrix
, David Kay
, Jochen Kursawe
, Philip K. Maini
, Beth McMillan
, Gary R. Mirams
, James M. Osborne
, Pras Pathmanathan
, Joe Pitt-Francis
, Martin Robinson
, Blanca Rodríguez
, Raymond J. Spiteri, David Gavaghan
:
Chaste: Cancer, Heart and Soft Tissue Environment. J. Open Source Softw. 5(47): 1848 (2020)
2010 – 2019
- 2019
- [j14]Yishi Liu
, Xiwang Dong
, Zhang Ren, Jonathan Cooper:
Fault-tolerant control for commercial aircraft with actuator faults and constraints. J. Frankl. Inst. 356(7): 3849-3868 (2019) - 2018
- [j13]Frank T. Bergmann
, Jonathan Cooper
, Matthias König
, Ion I. Moraru, David P. Nickerson
, Nicolas Le Novère, Brett G. Olivier
, Sven Sahle, Lucian P. Smith
, Dagmar Waltemath
:
Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 3 (L1V3). J. Integr. Bioinform. 15(1) (2018) - 2016
- [j12]Joanna Lewis
, Charles E. Breeze, Jane Charlesworth, Oliver J. Maclaren, Jonathan Cooper:
Where next for the reproducibility agenda in computational biology? BMC Syst. Biol. 10: 52 (2016) - 2015
- [j11]Frank T. Bergmann
, Jonathan Cooper, Nicolas Le Novère, David P. Nickerson
, Dagmar Waltemath:
Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 2. J. Integr. Bioinform. 12(2) (2015) - [j10]Bernhard Knapp, Rémi Bardenet, Miguel O. Bernabeu, Rafel Bordas
, Maria Bruna
, Ben Calderhead, Jonathan Cooper
, Alexander G. Fletcher
, Derek Groen, Bram Kuijper
, Joanna Lewis
, Greg J. McInerny, Timo Minssen
, James M. Osborne
, Verena Paulitschke, Joe Pitt-Francis
, Jelena Todoric, Christian A. Yates
, David Gavaghan
, Charlotte M. Deane
:
Ten Simple Rules for a Successful Cross-Disciplinary Collaboration. PLoS Comput. Biol. 11(4) (2015) - 2014
- [j9]Frank T. Bergmann
, Richard R. Adams
, Stuart L. Moodie, Jonathan Cooper
, Mihai Glont
, Martin Golebiewski
, Michael Hucka
, Camille Laibe
, Andrew K. Miller, David P. Nickerson
, Brett G. Olivier
, Nicolas Rodriguez
, Herbert M. Sauro, Martin Scharm, Stian Soiland-Reyes
, Dagmar Waltemath, Florent Yvon
, Nicolas Le Novère:
COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project. BMC Bioinform. 15: 369 (2014) - [j8]Miguel O. Bernabeu, James Southern, Nicholas Wilson, Peter E. Strazdins, Jonathan Cooper
, Joe Pitt-Francis
:
Chaste: A case study of parallelisation of an open source finite-element solver with applications to computational cardiac electrophysiology simulation. Int. J. High Perform. Comput. Appl. 28(1): 13-32 (2014) - [j7]James M. Osborne
, Miguel O. Bernabeu, Maria Bruna
, Ben Calderhead, Jonathan Cooper
, Neil Dalchau
, Sara-Jane Dunn, Alexander G. Fletcher
, Robin Freeman, Derek Groen
, Bernhard Knapp, Greg J. McInerny, Gary R. Mirams
, Joe Pitt-Francis
, Biswa Sengupta
, David W. Wright, Christian A. Yates
, David Gavaghan
, Stephen Emmott, Charlotte M. Deane
:
Ten Simple Rules for Effective Computational Research. PLoS Comput. Biol. 10(3) (2014) - [i1]Frank T. Bergmann, Richard Adams, Stuart L. Moodie, Jonathan Cooper, Mihai Glont, Martin Golebiewski, Michael Hucka, Camille Laibe, Andrew K. Miller, David P. Nickerson, Brett G. Olivier, Nicolas Rodriguez, Herbert M. Sauro, Martin Scharm, Stian Soiland-Reyes, Dagmar Waltemath, Florent Yvon, Nicolas Le Novère:
COMBINE archive: One File To Share Them All. CoRR abs/1407.4992 (2014) - 2013
- [j6]Gary R. Mirams
, Christopher J. Arthurs
, Miguel O. Bernabeu, Rafel Bordas
, Jonathan Cooper
, Alberto Corrias
, Yohan Davit, Sara-Jane Dunn, Alexander G. Fletcher
, Daniel G. Harvey, Megan E. Marsh, James M. Osborne
, Pras Pathmanathan, Joe Pitt-Francis
, James Southern, Nejib Zemzemi
, David Gavaghan
:
Chaste: An Open Source C++ Library for Computational Physiology and Biology. PLoS Comput. Biol. 9(3) (2013) - [c5]Jonathan Cooper
, James M. Osborne
:
Connecting Models to Data in Multiscale Multicellular Tissue Simulations. ICCS 2013: 712-721 - 2011
- [j5]Dagmar Waltemath, Richard R. Adams
, Daniel A. Beard
, Frank T. Bergmann
, Upinder S. Bhalla, Randall Britten, Vijayalakshmi Chelliah
, Mike T. Cooling
, Jonathan Cooper
, Edmund J. Crampin, Alan Garny, Stefan Hoops, Michael Hucka
, Peter J. Hunter
, Edda Klipp, Camille Laibe
, Andrew K. Miller, Ion I. Moraru
, David P. Nickerson
, Poul M. F. Nielsen, Macha Nikolski, Sven Sahle, Herbert M. Sauro
, Henning Schmidt, Jacky L. Snoep
, Dominic P. Tolle
, Olaf Wolkenhauer
, Nicolas Le Novère:
Minimum Information About a Simulation Experiment (MIASE). PLoS Comput. Biol. 7(4) (2011) - [c4]David Johnson
, Jonathan Cooper
, Steve McKeever:
TumorML: Concept and requirements of an in silico cancer modelling markup language. EMBC 2011: 441-444 - 2010
- [j4]Andrew K. Miller, Justin Marsh, Adam Reeve, Alan Garny, Randall Britten, Matt D. B. Halstead, Jonathan Cooper
, David P. Nickerson
, Poul M. F. Nielsen:
An overview of the CellML API and its implementation. BMC Bioinform. 11: 178 (2010) - [j3]Jonathan Cooper
, Jonathan P. Whiteley, David J. Gavaghan
:
A Posteriori Error Analysis for the Use of Lookup Tables in Cardiac Electrophysiology Simulations. SIAM J. Sci. Comput. 32(4): 2167-2189 (2010)
2000 – 2009
- 2009
- [j2]Joe Pitt-Francis
, Pras Pathmanathan, Miguel O. Bernabeu, Rafel Bordas
, Jonathan Cooper
, Alexander G. Fletcher
, Gary R. Mirams
, Philip J. Murray
, James M. Osborne
, Alex Walter, S. Jonathan Chapman
, Alan Garny, Ingeborg M. M. van Leeuwen, Philip K. Maini, Blanca Rodríguez, Sarah L. Waters
, Jonathan P. Whiteley, Helen M. Byrne
, David Gavaghan
:
Chaste: A test-driven approach to software development for biological modelling. Comput. Phys. Commun. 180(12): 2452-2471 (2009) - 2008
- [j1]Jonathan Cooper
, Steve McKeever:
A model-driven approach to automatic conversion of physical units. Softw. Pract. Exp. 38(4): 337-359 (2008) - 2007
- [c3]Jonathan Cooper
, Steve McKeever:
Experience report: a Haskell interpreter for cellML. ICFP 2007: 247-250 - 2006
- [c2]Jonathan Cooper
, Steve McKeever, Alan Garny:
On the application of partial evaluation to the optimisation of cardiac electrophysiological simulations. PEPM 2006: 12-20
1990 – 1999
- 1993
- [c1]Jonathan Cooper:
Engaging the Visitor: Relevance, Participation and Motivation in Hypermedia Design. ICHIM 1993: 174-177
Coauthor Index
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