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Mohammad S. Refahi

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Conference and Workshop Papers

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2024
[c1]
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  - conf/bcb/HearneRDBR24
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Gavin L. A. Hearne, Mohammad S. Refahi, Haozhe Neil Duan, James R. Brown, Gail L. Rosen:
Normalized Compression Distance for DNA Classification. BCB 2024: 93:1

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2025
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  - journals/corr/abs-2507-09378
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Mohammad S. Refahi, Mahdi Abavisani, Bahrad A. Sokhansanj, James R. Brown, Gail Rosen:
Context-Aware Regularization with Markovian Integration for Attention-Based Nucleotide Analysis. CoRR abs/2507.09378 (2025)
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Mohammad S. Refahi, Gavin L. A. Hearne, Harrison Muller, Kieran Lynch, Bahrad A. Sokhansanj, James R. Brown, Gail Rosen:
Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN. CoRR abs/2507.16978 (2025)
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  - journals/corr/abs-2509-20693
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Mohammad S. Refahi, Bahrad A. Sokhansanj, James R. Brown, Gail Rosen:
Learning to Align Molecules and Proteins: A Geometry-Aware Approach to Binding Affinity. CoRR abs/2509.20693 (2025)

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