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Journal Articles
- 2020
[j22]Gaëtan Benoit, Mahendra Mariadassou, Stéphane Robin, Sophie Schbath
, Pierre Peterlongo, Claire Lemaitre:
SimkaMin: fast and resource frugal de novo comparative metagenomics. Bioinform. 36(4): 1275-1276 (2020)- [j21]Julie Hurel, Sophie Schbath, Stéphanie Bougeard, Mathieu Rolland, Mauro Petrillo, Fabrice Touzain:
DUGMO: tool for the detection of unknown genetically modified organisms with high-throughput sequencing data for pure bacterial samples. BMC Bioinform. 21(1): 284 (2020) - 2016
- [j20]Gaëtan Benoit, Pierre Peterlongo, Mahendra Mariadassou, Erwan Drezen, Sophie Schbath, Dominique Lavenier, Claire Lemaitre:
Multiple comparative metagenomics using multiset k-mer counting. PeerJ Comput. Sci. 2: e94 (2016) - 2012
- [j19]Hugo Devillers, Sophie Schbath:
Separating Significant Matches from Spurious Matches in DNA Sequences. J. Comput. Biol. 19(1): 1-12 (2012) - [j18]Afshin Fayyaz Movaghar, Guillaume Launay, Sophie Schbath, Jean-François Gibrat, François Rodolphe:
Statistical Significance of Threading Scores. J. Comput. Biol. 19(1): 13-29 (2012) - [j17]Sophie Schbath, Véronique Martin, Matthias Zytnicki, Julien Fayolle, Valentin Loux, Jean-François Gibrat:
Mapping Reads on a Genomic Sequence: An Algorithmic Overview and a Practical Comparative Analysis. J. Comput. Biol. 19(6): 796-813 (2012) - 2011
- [j16]Valery T. Stefanov, Stéphane Robin, Sophie Schbath:
Occurrence of structured motifs in random sequences: Arbitrary number of boxes. Discret. Appl. Math. 159(8): 826-831 (2011) - [j15]Hugo Devillers, Hélène Chiapello, Sophie Schbath, Meriem El Karoui:
Robustness Assessment of Whole Bacterial Genome Segmentations. J. Comput. Biol. 18(9): 1155-1165 (2011) - 2009
- [j14]Sophie Schbath, Vincent Lacroix, Marie-France Sagot:
Assessing the Exceptionality of Coloured Motifs in Networks. EURASIP J. Bioinform. Syst. Biol. 2009 (2009) - 2008
- [j13]Fabrice Touzain, Sophie Schbath, Isabelle Debled-Rennesson, Bertrand Aigle, Gregory Kucherov, Pierre Leblond:
SIGffRid: A tool to search for sigma factor binding sites in bacterial genomes using comparative approach and biologically driven statistics. BMC Bioinform. 9 (2008) - [j12]Franck Picard, Jean-Jacques Daudin, Michel Koskas, Sophie Schbath, Stéphane Robin:
Assessing the Exceptionality of Network Motifs. J. Comput. Biol. 15(1): 1-20 (2008) - 2007
- [j11]Stéphane Robin, Sophie Schbath, Vincent Vandewalle:
Statistical tests to compare motif count exceptionalities. BMC Bioinform. 8 (2007) - [j10]Valery T. Stefanov, Stéphane Robin, Sophie Schbath:
Waiting times for clumps of patterns and for structured motifs in random sequences. Discret. Appl. Math. 155(6-7): 868-880 (2007) - 2002
- [j9]Stéphane Robin, Sophie Schbath:
Numerical Comparison of Several Approximations of the Word Count Distribution in Random Sequences. J. Comput. Biol. 8(4): 349-359 (2002) - [j8]Stéphane Robin, Jean-Jacques Daudin, Hugues Richard, Marie-France Sagot, Sophie Schbath:
Occurrence Probability of Structured Motifs in Random Sequences. J. Comput. Biol. 9(6): 761-773 (2002) - 2000
- [j7]Gesine Reinert, Sophie Schbath, Michael S. Waterman:
Probabilistic and Statistical Properties of Words: An Overview. J. Comput. Biol. 7(1-2): 1-46 (2000) - [j6]Sophie Schbath, Nathalie Bossard, Simon Tavaré:
The Effect of Nonhomogeneous Clone Length Distribution on the Progress of an STS Mapping Project. J. Comput. Biol. 7(1-2): 47-57 (2000) - [j5]Sophie Schbath:
An Overview on the Distribution of Word Counts in Markov Chains. J. Comput. Biol. 7(1-2): 193-201 (2000) - 1998
- [j4]Gesine Reinert, Sophie Schbath:
Compound Poisson and Poisson Process Approximations for Occurrences of Multiple Words in Markov Chains. J. Comput. Biol. 5(2): 223-253 (1998) - 1997
- [j3]Sophie Schbath:
Coverage Processes in Physical Mapping by Anchoring Random Clones. J. Comput. Biol. 4(1): 61-82 (1997) - [j2]Sophie Schbath:
An Efficient Statistic to Detect Over-and Under-Represented Words in DNA Sequences. J. Comput. Biol. 4(2): 189-192 (1997) - 1995
- [j1]Sophie Schbath, Bernard Prum, Elisabeth de Turckheim:
Exceptional Motifs in Different Markov Chain Models for a Statistical Analysis of DNA Sequences. J. Comput. Biol. 2(3): 417-437 (1995)
Conference and Workshop Papers
- 2010
- [c1]Hugo Devillers, Hélène Chiapello, Sophie Schbath, Meriem El Karoui:
Assessing the Robustness of Complete Bacterial Genome Segmentations. RECOMB-CG 2010: 173-187
Coauthor Index
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