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John D. Holliday
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2010 – 2019
- 2015
- [j33]John D. Holliday, Nor Sani, Peter Willett:
Calculation of Substructural Analysis Weights Using a Genetic Algorithm. J. Chem. Inf. Model. 55(2): 214-221 (2015) - [j32]Edmund Duesbury, John D. Holliday, Peter Willett:
Maximum Common Substructure-Based Data Fusion in Similarity Searching. J. Chem. Inf. Model. 55(2): 222-230 (2015) - 2014
- [j31]Pedro Franco, Nuria Porta
, John D. Holliday, Peter Willett:
The use of 2D fingerprint methods to support the assessment of structural similarity in orphan drug legislation. J. Cheminformatics 6(1): 5 (2014) - 2013
- [j30]Shereena M. Arif, John D. Holliday, Peter Willett:
Comparison of chemical similarity measures using different numbers of query structures. J. Inf. Sci. 39(1): 7-14 (2013) - 2012
- [j29]John D. Holliday, Peter Willett, Hua Xiang:
Interactions Between Weighting Scheme and Similarity Coefficient in Similarity-Based Virtual Screening. Int. J. Chemoinformatics Chem. Eng. 2(2): 28-41 (2012) - [j28]Roberto Todeschini
, Viviana Consonni
, Hua Xiang, John D. Holliday, Paolo Massimo Buscema
, Peter Willett:
Similarity Coefficients for Binary Chemoinformatics Data: Overview and Extended Comparison Using Simulated and Real Data Sets. J. Chem. Inf. Model. 52(11): 2884-2901 (2012) - 2011
- [j27]John D. Holliday, Evangelos Kanoulas
, Nurul Malim
, Peter Willett:
Multiple search methods for similarity-based virtual screening: analysis of search overlap and precision. J. Cheminformatics 3: 29 (2011) - [p1]John D. Holliday, Peter Willett:
Representation and Searching of Chemical-Structure Information in Patents. Current Challenges in Patent Information Retrieval 2011: 343-355 - 2010
- [j26]Shereena M. Arif, John D. Holliday, Peter Willett:
Inverse Frequency Weighting of Fragments for Similarity-Based Virtual Screening. J. Chem. Inf. Model. 50(8): 1340-1349 (2010)
2000 – 2009
- 2009
- [j25]Shereena M. Arif, John D. Holliday, Peter Willett:
Analysis and use of fragment-occurrence data in similarity-based virtual screening. J. Comput. Aided Mol. Des. 23(9): 655-668 (2009) - [j24]Chia-Wei Chu
, John D. Holliday, Peter Willett:
Effect of Data Standardization on Chemical Clustering and Similarity Searching. J. Chem. Inf. Model. 49(2): 155-161 (2009) - [j23]Jenny Chen, John D. Holliday, John Bradshaw:
A Machine Learning Approach to Weighting Schemes in the Data Fusion of Similarity Coefficients. J. Chem. Inf. Model. 49(2): 185-194 (2009) - [j22]Aysha Al Khalifa, Maciej Haranczyk
, John D. Holliday:
Comparison of Nonbinary Similarity Coefficients for Similarity Searching, Clustering and Compound Selection. J. Chem. Inf. Model. 49(5): 1193-1201 (2009) - [j21]Eleanor J. Gardiner, Valerie J. Gillet
, Maciej Haranczyk
, Jérôme Hert
, John D. Holliday, Nurul Malim
, Yogendra Patel, Peter Willett:
Turbo similarity searching: Effect of fingerprint and dataset on virtual-screening performance. Stat. Anal. Data Min. 2(2): 103-114 (2009) - [c1]Shereena M. Arif, Jérôme Hert, John D. Holliday, Nurul Malim
, Peter Willett:
Enhancing the Effectiveness of Fingerprint-Based Virtual Screening: Use of Turbo Similarity Searching and of Fragment Frequencies of Occurrence. PRIB 2009: 404-414 - 2008
- [j20]Maciej Haranczyk
, John D. Holliday, Peter Willett, Maciej Gutowski
:
Structure and singly occupied molecular orbital analysis of anionic tautomers of guanine. J. Comput. Chem. 29(8): 1277-1291 (2008) - [j19]Maciej Haranczyk
, John D. Holliday:
Comparison of Similarity Coefficients for Clustering and Compound Selection. J. Chem. Inf. Model. 48(3): 498-508 (2008) - 2004
- [j18]John D. Holliday, Sarah L. Rodgers, Peter Willett, Min-You Chen, Mahdi Mahfouf, Kevin Lawson, Graham Mullier:
Clustering Files of Chemical Structures Using the Fuzzy k-Means Clustering Method. J. Chem. Inf. Model. 44(3): 894-902 (2004) - 2003
- [j17]John D. Holliday, Stephen P. Jelfs, Peter Willett, Peter Gedeck
:
Calculation of Intersubstituent Similarity Using R-Group Descriptors. J. Chem. Inf. Comput. Sci. 43(2): 406-411 (2003) - [j16]Naomie Salim
, John D. Holliday, Peter Willett:
Combination of Fingerprint-Based Similarity Coefficients Using Data Fusion. J. Chem. Inf. Comput. Sci. 43(2): 435-442 (2003) - [j15]John D. Holliday, Naomie Salim
, Martin Whittle, Peter Willett:
Analysis and Display of the Size Dependence of Chemical Similarity Coefficients. J. Chem. Inf. Comput. Sci. 43(3): 819-828 (2003) - [j14]Neal Bishop, Valerie J. Gillet, John D. Holliday, Peter Willett:
Chemoinformatics Research at the University of Sheffield: A History and Citation Analysis. J. Inf. Sci. 29(4): 249-267 (2003)
1990 – 1999
- 1996
- [j13]Michael F. Lynch, John D. Holliday:
The Sheffield Generic Structures Project-a Retrospective Review. J. Chem. Inf. Comput. Sci. 36(5): 930-936 (1996) - 1995
- [j12]John D. Holliday, Michael F. Lynch:
Computer Storage and Retrieval of Generic Chemical Structures in Patents, 16. The Refined Search: An Algorithm for Matching Components of Generic Chemical Structures at the Atom-Bond Level. J. Chem. Inf. Comput. Sci. 35(1): 1-7 (1995) - [j11]John D. Holliday, Michael F. Lynch:
Computer Storage and Retrieval of Generic Chemical Structures in Patents, 17. Evaluation of the Refined Search. J. Chem. Inf. Comput. Sci. 35(4): 659-662 (1995) - 1994
- [j10]John D. Holliday, Geoffrey M. Downs, Valerie J. Gillet, Michael F. Lynch, Winfried Dethlefsen:
Evaluation of the screening stages of the Sheffield Research Project on Computer Storage and Retrieval of Generic Chemical Structures in Patents. J. Chem. Inf. Comput. Sci. 34(1): 39-46 (1994) - 1993
- [j9]John D. Holliday, Geoffrey M. Downs, Valerie J. Gillet, Michael F. Lynch:
Computer storage and retrieval of generic chemical structures in patents. 15. Generation of topological fragment descriptors from nontopological representations of generic structure components. J. Chem. Inf. Comput. Sci. 33(3): 369-377 (1993) - 1992
- [j8]John D. Holliday, Geoffrey M. Downs, Valerie J. Gillet, Michael F. Lynch:
Computer storage and retrieval of generic chemical structures in patents. 14. Fragment generation from generic structures. J. Chem. Inf. Comput. Sci. 32(5): 453-462 (1992) - 1991
- [j7]Winfried Dethlefsen, Michael F. Lynch, Valerie J. Gillet, Geoffrey M. Downs, John D. Holliday, John M. Barnard:
Computer storage and retrieval of generic chemical structures in patents. 11. Theoretical aspects of the use of structure languages in a retrieval system. J. Chem. Inf. Comput. Sci. 31(2): 233-253 (1991) - [j6]Winfried Dethlefsen, Michael F. Lynch, Valerie J. Gillet, Geoffrey M. Downs, John D. Holliday, John M. Barnard:
Computer storage and retrieval of generic chemical structures in patents. 12. Principles of search operations involving parameter lists: matching-relations, user-defined match levels, and transition from the reduced graph search to the refined search. J. Chem. Inf. Comput. Sci. 31(2): 253-260 (1991) - [j5]Valerie J. Gillet, Geoffrey M. Downs, John D. Holliday, Michael F. Lynch, Winfried Dethlefsen:
Computer storage and retrieval of generic chemical structures in patents. 13. Reduced graph generation. J. Chem. Inf. Comput. Sci. 31(2): 260-270 (1991)
1980 – 1989
- 1989
- [j4]Geoffrey M. Downs, Valerie J. Gillet, John D. Holliday, Michael F. Lynch:
Review of ring perception algorithms for chemical graphs. J. Chem. Inf. Comput. Sci. 29(3): 172-187 (1989) - [j3]Geoffrey M. Downs, Valerie J. Gillet, John D. Holliday, Michael F. Lynch:
Theoretical aspects of ring perception and development of the extended set of smallest rings concept. J. Chem. Inf. Comput. Sci. 29(3): 187-206 (1989) - [j2]Geoffrey M. Downs, Valerie J. Gillet, John D. Holliday, Michael F. Lynch:
Computer storage and retrieval of generic chemical structures in patents. 9. An algorithm to find the extended set of smallest rings in structurally explicit generics. J. Chem. Inf. Comput. Sci. 29(3): 207-214 (1989) - [j1]Geoffrey M. Downs, Valerie J. Gillet, John D. Holliday, Michael F. Lynch:
Computer storage and retrieval of generic chemical structures in patents. 10. Assignment and logical bubble-up of ring screens for structurally explicit generics. J. Chem. Inf. Comput. Sci. 29(3): 215-224 (1989)
Coauthor Index
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