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ORCIDDorrie Main
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- affiliation: Washington State University, Department of Horticulture, Pullman, WA, USA
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Journal Articles
- 2021
[j21]Margaret Staton
, Ethalinda Cannon, Lacey-Anne Sanderson, Jill L. Wegrzyn, Tavis K. Anderson, Sean Buehler, Irene Cobo-Simón, Kay Faaberg, Emily S. Grau, Valentin Guignon, Jessica Gunoskey, Blake Inderski, Sook Jung, Kelly Lager, Dorrie Main, Monica Poelchau, Risharde Ramnath, Peter Richter, Joe West, Stephen P. Ficklin:
Tripal, a community update after 10 years of supporting open source, standards-based genetic, genomic and breeding databases. Briefings Bioinform. 22(6) (2021)- [j20]Sook Jung, Chun-Huai Cheng, Katheryn Buble, Taein Lee, Jodi L. Humann, Jing Yu, James Crabb, Heidi Hough, Dorrie Main:
Tripal MegaSearch: a tool for interactive and customizable query and download of big data. Database J. Biol. Databases Curation 2021 (2021) - [j19]Sook Jung, Taein Lee, Ksenija Gasic, B. Todd Campbell, Jing Yu, Jodi L. Humann, Sushan Ru, Daniel Edge-Garza, Heidi Hough, Dorrie Main:
The Breeding Information Management System (BIMS): an online resource for crop breeding. Database J. Biol. Databases Curation 2021 (2021) - 2020
- [j18]Shawna Spoor, Connor Wytko, Brian Soto, Ming Chen, Abdullah Almsaeed, Bradford Condon, Nic Herndon, Heidi Hough, Sook Jung, Meg Staton, Jill L. Wegrzyn, Dorrie Main, F. Alex Feltus, Stephen P. Ficklin:
Tripal and Galaxy: supporting reproducible scientific workflows for community biological databases. Database J. Biol. Databases Curation 2020 (2020) - 2019
- [j17]Taylor Falk, Nic Herndon, Emily S. Grau, Sean Buehler, Peter Richter, Sumaira Zaman, Eliza M. Baker, Risharde Ramnath, Stephen P. Ficklin, Margaret Staton, Frank Alex Feltus, Sook Jung, Doreen Main, Jill L. Wegrzyn:
Growing and cultivating the forest genomics database, TreeGenes. Database J. Biol. Databases Curation 2019: baz043 (2019) - [j16]Shawna Spoor, Chun-Huai Cheng, Lacey-Anne Sanderson, Bradford Condon, Abdullah Almsaeed, Ming Chen, Anthony Bretaudeau, Helena Rasche, Sook Jung, Dorrie Main, Kirstin E. Bett, Margaret Staton, Jill L. Wegrzyn, F. Alex Feltus, Stephen P. Ficklin:
Tripal v3: an ontology-based toolkit for construction of FAIR biological community databases. Database J. Biol. Databases Curation 2019: baz077 (2019) - [j15]Katheryn Buble, Sook Jung, Jodi L. Humann, Jing Yu, Chun-Huai Cheng, Taein Lee, Stephen P. Ficklin, Heidi Hough, Bradford Condon, Margaret E. Staton, Jill L. Wegrzyn, Dorrie Main:
Tripal MapViewer: A tool for interactive visualization and comparison of genetic maps. Database J. Biol. Databases Curation 2019: baz100 (2019) - [j14]Sook Jung, Taein Lee, Chun-Huai Cheng, Katheryn Buble, Ping Zheng, Jing Yu, Jodi L. Humann, Stephen P. Ficklin, Ksenija Gasic, Kristin Scott, Morgan Frank, Sushan Ru, Heidi Hough, Kate Evans, Cameron Peace, Mercy A. Olmstead, Lisa W. DeVetter, James McFerson, Michael Coe, Jill L. Wegrzyn, Margaret E. Staton, Albert G. Abbott, Dorrie Main:
15 years of GDR: New data and functionality in the Genome Database for Rosaceae. Nucleic Acids Res. 47(Database-Issue): D1137-D1145 (2019) - 2018
- [j13]Taylor Falk, Nic Herndon, Emily S. Grau, Sean Buehler, Peter Richter, Sumaira Zaman, Eliza M. Baker, Risharde Ramnath, Stephen P. Ficklin, Margaret Staton, Frank Alex Feltus, Sook Jung, Doreen Main, Jill L. Wegrzyn:
Growing and cultivating the forest genomics database, TreeGenes. Database J. Biol. Databases Curation 2018: bay084 (2018) - [j12]Lisa C. Harper, Jacqueline D. Campbell, Ethalinda K. S. Cannon, Sook Jung, Monica Poelchau, Ramona L. Walls, Carson M. Andorf, Elizabeth Arnaud, Tanya Z. Berardini, Clayton L. Birkett, Steven B. Cannon, James D. Carson, Bradford Condon, Laurel Cooper, Nathan A. Dunn, Christine G. Elsik, Andrew D. Farmer, Stephen P. Ficklin, David M. Grant, Emily S. Grau, Nic Herndon, Zhi-Liang Hu, Jodi L. Humann, Pankaj Jaiswal, Clément Jonquet, Marie-Angélique Laporte, Pierre Larmande, Gerard R. Lazo, Fiona McCarthy, Naama Menda, Christopher J. Mungall, Monica C. Munoz-Torres, Sushma Naithani, Rex T. Nelson, Daureen Nesdill, Carissa A. Park, James M. Reecy, Leonore Reiser, Lacey-Anne Sanderson, Taner Z. Sen, Margaret Staton, Sabarinath Subramaniam, Marcela Karey Tello-Ruiz, Victor Unda, Deepak R. Unni, Liya Wang, Doreen Ware, Jill L. Wegrzyn, Jason Williams, Margaret Woodhouse, Jing Yu, Doreen Main:
AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture. Database J. Biol. Databases Curation 2018: bay088 (2018) - 2017
- [j11]Sook Jung, Taein Lee, Chun-Huai Cheng, Stephen P. Ficklin, Jing Yu, Jodi L. Humann, Dorrie Main:
Extension modules for storage, visualization and querying of genomic, genetic and breeding data in Tripal databases. Database J. Biol. Databases Curation 2017: bax092 (2017) - 2016
- [j10]Sook Jung, Taein Lee, Stephen P. Ficklin, Jing Yu, Chun-Huai Cheng, Dorrie Main:
Chado use case: storing genomic, genetic and breeding data of Rosaceae and Gossypium crops in Chado. Database J. Biol. Databases Curation 2016 (2016) - [j9]Sook Jung, Taein Lee, Stephen P. Ficklin, Jing Yu, Chun-Huai Cheng, Dorrie Main:
Chado use case: storing genomic, genetic and breeding data of Rosaceae and Gossypium crops in Chado. Database J. Biol. Databases Curation 2016 (2016) - 2014
- [j8]Jing Yu, Sook Jung, Chun-Huai Cheng, Stephen P. Ficklin, Taein Lee, Ping Zheng, Don Jones, Richard G. Percy, Dorrie Main:
CottonGen: a genomics, genetics and breeding database for cotton research. Nucleic Acids Res. 42(Database-Issue): 1229-1236 (2014) - [j7]Sook Jung, Stephen P. Ficklin, Taein Lee, Chun-Huai Cheng, Anna Blenda, Ping Zheng, Jing Yu, Aureliano Bombarely, Ilhyung Cho, Sushan Ru, Kate Evans, Cameron Peace, Albert G. Abbott, Lukas A. Mueller, Mercy A. Olmstead, Dorrie Main:
The Genome Database for Rosaceae (GDR): year 10 update. Nucleic Acids Res. 42(Database-Issue): 1237-1244 (2014) - 2013
- [j6]Kate Evans, Sook Jung, Taein Lee, Lisa Brutcher, Ilhyung Cho, Cameron Peace, Dorrie Main:
Addition of a breeding database in the Genome Database for Rosaceae. Database J. Biol. Databases Curation 2013 (2013) - [j5]Lacey-Anne Sanderson, Stephen P. Ficklin, Chun-Huai Cheng, Sook Jung, F. Alex Feltus, Kirstin E. Bett, Dorrie Main:
Tripal v1.1: a standards-based toolkit for construction of online genetic and genomic databases. Database J. Biol. Databases Curation 2013 (2013) - 2011
- [j4]Stephen P. Ficklin, Lacey-Anne Sanderson, Chun-Huai Cheng, Margaret Staton, Taein Lee, Ilhyung Cho, Sook Jung, Kirstin E. Bett, Doreen Main:
Tripal: a construction toolkit for online genome databases. Database J. Biol. Databases Curation 2011 (2011) - [j3]Sook Jung, Naama Menda, Seth Redmond, Robert M. Buels, Maren Friesen, Yuri R. Bendaña, Lacey-Anne Sanderson, Hilmar Lapp, Taein Lee, Bob MacCallum, Kirstin E. Bett, Scott Cain, Dave Clements, Lukas A. Mueller, Dorrie Main:
The Chado Natural Diversity module: a new generic database schema for large-scale phenotyping and genotyping data. Database J. Biol. Databases Curation 2011 (2011) - 2008
- [j2]Sook Jung, Margaret Staton, Taein Lee, Anna Blenda, Randall Svancara, Albert G. Abbott, Dorrie Main:
GDR (Genome Database for Rosaceae): integrated web-database for Rosaceae genomics and genetics data. Nucleic Acids Res. 36(Database-Issue): 1034-1040 (2008) - 2004
- [j1]Sook Jung, Christopher Jesudurai, Margaret Staton, Zhidian Du, Stephen P. Ficklin, Ilhyung Cho, Albert G. Abbott, Jeffrey Tomkins, Dorrie Main:
GDR (Genome Database for Rosaceae): integrated web resources for Rosaceae genomics and genetics research. BMC Bioinform. 5: 130 (2004)
Conference and Workshop Papers
- 2011
- [c1]Taein Lee, Cameron Peace, Sook Jung, Ping Zheng, Dorrie Main, Ilhyung Cho:
GenSAS - An online integrated genome sequence annotation pipeline. BMEI 2011: 1967-1973
Parts in Books or Collections
- 2018
- [p1]Nic Herndon, Taylor Falk, Emily S. Grau, Sook Jung, Stephen P. Ficklin, Dorrie Main, Margaret E. Staton, Jill L. Wegrzyn:
Association Mapping for Forest Trees with CartograTree. Application of Semantic Technology in Biodiversity Science 2018: 137-149
Coauthor Index
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