BibTeX records: Stuart L. Moodie

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@article{DBLP:journals/jib/SmithMBGKKMSWH20,
  author    = {Lucian P. Smith and
               Stuart L. Moodie and
               Frank T. Bergmann and
               Colin S. Gillespie and
               Sarah M. Keating and
               Matthias K{\"{o}}nig and
               Chris J. Myers and
               Maciek J. Swat and
               Darren J. Wilkinson and
               Michael Hucka},
  title     = {Systems Biology Markup Language {(SBML)} Level 3 Package: Distributions,
               Version 1, Release 1},
  journal   = {J. Integr. Bioinform.},
  volume    = {17},
  number    = {2-3},
  year      = {2020},
  url       = {https://doi.org/10.1515/jib-2020-0018},
  doi       = {10.1515/jib-2020-0018},
  timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/SmithMBGKKMSWH20.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/RougnyTMBCBDMDB19,
  author    = {Adrien Rougny and
               Vasundra Tour{\'{e}} and
               Stuart L. Moodie and
               Irina Balaur and
               Tobias Czauderna and
               Hanna Borlinghaus and
               Ugur Dogrusoz and
               Alexander Mazein and
               Andreas Dr{\"{a}}ger and
               Michael L. Blinov and
               Alice Vill{\'{e}}ger and
               Robin Haw and
               Emek Demir and
               Huaiyu Mi and
               Anatoly A. Sorokin and
               Falk Schreiber and
               Augustin Luna},
  title     = {Systems Biology Graphical Notation: Process Description language Level
               1 Version 2.0},
  journal   = {J. Integr. Bioinform.},
  volume    = {16},
  number    = {2},
  year      = {2019},
  url       = {https://doi.org/10.1515/jib-2019-0022},
  doi       = {10.1515/jib-2019-0022},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/RougnyTMBCBDMDB19.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/MiSMCDHLNSV15,
  author    = {Huaiyu Mi and
               Falk Schreiber and
               Stuart L. Moodie and
               Tobias Czauderna and
               Emek Demir and
               Robin Haw and
               Augustin Luna and
               Nicolas Le Nov{\`{e}}re and
               Anatoly A. Sorokin and
               Alice Vill{\'{e}}ger},
  title     = {Systems Biology Graphical Notation: Activity Flow language Level 1
               Version 1.2},
  journal   = {J. Integr. Bioinform.},
  volume    = {12},
  number    = {2},
  year      = {2015},
  url       = {https://doi.org/10.2390/biecoll-jib-2015-265},
  doi       = {10.2390/biecoll-jib-2015-265},
  timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/MiSMCDHLNSV15.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/MoodieNDMV15,
  author    = {Stuart L. Moodie and
               Nicolas Le Nov{\`{e}}re and
               Emek Demir and
               Huaiyu Mi and
               Alice Vill{\'{e}}ger},
  title     = {Systems Biology Graphical Notation: Process Description language Level
               1 Version 1.3},
  journal   = {J. Integr. Bioinform.},
  volume    = {12},
  number    = {2},
  year      = {2015},
  url       = {https://doi.org/10.2390/biecoll-jib-2015-263},
  doi       = {10.2390/biecoll-jib-2015-263},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/MoodieNDMV15.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SorokinNLCDHMMS15,
  author    = {Anatoly A. Sorokin and
               Nicolas Le Nov{\`{e}}re and
               Augustin Luna and
               Tobias Czauderna and
               Emek Demir and
               Robin Haw and
               Huaiyu Mi and
               Stuart L. Moodie and
               Falk Schreiber and
               Alice Vill{\'{e}}ger},
  title     = {Systems Biology Graphical Notation: Entity Relationship language Level
               1 Version 2},
  journal   = {J. Integr. Bioinform.},
  volume    = {12},
  number    = {2},
  year      = {2015},
  url       = {https://doi.org/10.2390/biecoll-jib-2015-264},
  doi       = {10.2390/biecoll-jib-2015-264},
  timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/SorokinNLCDHMMS15.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/euspn/KokashMSH15,
  author    = {Natallia Kokash and
               Stuart L. Moodie and
               Mike K. Smith and
               Nick Holford},
  title     = {Implementing a Domain-specific Language for Model-based Drug Development},
  booktitle = {The 6th International Conference on Emerging Ubiquitous Systems and
               Pervasive Networks {(EUSPN} 2015)/ The 5th International Conference
               on Current and Future Trends of Information and Communication Technologies
               in Healthcare {(ICTH-2015)/} Affiliated Workshops, September 27-30,
               2015, Berlin, Germany},
  series    = {Procedia Computer Science},
  volume    = {63},
  pages     = {308--316},
  publisher = {Elsevier},
  year      = {2015},
  url       = {https://doi.org/10.1016/j.procs.2015.08.348},
  doi       = {10.1016/j.procs.2015.08.348},
  timestamp = {Wed, 10 Feb 2021 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/conf/euspn/KokashMSH15.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BergmannAMCGGHLMNORSSSWYN14,
  author    = {Frank T. Bergmann and
               Richard R. Adams and
               Stuart L. Moodie and
               Jonathan Cooper and
               Mihai Glont and
               Martin Golebiewski and
               Michael Hucka and
               Camille Laibe and
               Andrew K. Miller and
               David P. Nickerson and
               Brett G. Olivier and
               Nicolas Rodriguez and
               Herbert M. Sauro and
               Martin Scharm and
               Stian Soiland{-}Reyes and
               Dagmar Waltemath and
               Florent Yvon and
               Nicolas Le Nov{\`{e}}re},
  title     = {{COMBINE} archive and {OMEX} format: one file to share all information
               to reproduce a modeling project},
  journal   = {{BMC} Bioinform.},
  volume    = {15},
  pages     = {369},
  year      = {2014},
  url       = {https://doi.org/10.1186/s12859-014-0369-z},
  doi       = {10.1186/s12859-014-0369-z},
  timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/journals/bmcbi/BergmannAMCGGHLMNORSSSWYN14.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/BergmannAMCGGHLMNORSSSWYN14,
  author    = {Frank T. Bergmann and
               Richard Adams and
               Stuart L. Moodie and
               Jonathan Cooper and
               Mihai Glont and
               Martin Golebiewski and
               Michael Hucka and
               Camille Laibe and
               Andrew K. Miller and
               David P. Nickerson and
               Brett G. Olivier and
               Nicolas Rodriguez and
               Herbert M. Sauro and
               Martin Scharm and
               Stian Soiland{-}Reyes and
               Dagmar Waltemath and
               Florent Yvon and
               Nicolas Le Nov{\`{e}}re},
  title     = {{COMBINE} archive: One File To Share Them All},
  journal   = {CoRR},
  volume    = {abs/1407.4992},
  year      = {2014},
  url       = {http://arxiv.org/abs/1407.4992},
  archivePrefix = {arXiv},
  eprint    = {1407.4992},
  timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/corr/BergmannAMCGGHLMNORSSSWYN14.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IerselVCBBLDSDMFAMMKNS12,
  author    = {Martijn P. van Iersel and
               Alice Vill{\'{e}}ger and
               Tobias Czauderna and
               Sarah E. Boyd and
               Frank T. Bergmann and
               Augustin Luna and
               Emek Demir and
               Anatoly A. Sorokin and
               Ugur Dogrus{\"{o}}z and
               Yukiko Matsuoka and
               Akira Funahashi and
               Mirit I. Aladjem and
               Huaiyu Mi and
               Stuart L. Moodie and
               Hiroaki Kitano and
               Nicolas Le Nov{\`{e}}re and
               Falk Schreiber},
  title     = {Software support for {SBGN} maps: {SBGN-ML} and LibSBGN},
  journal   = {Bioinform.},
  volume    = {28},
  number    = {15},
  pages     = {2016--2021},
  year      = {2012},
  url       = {https://doi.org/10.1093/bioinformatics/bts270},
  doi       = {10.1093/bioinformatics/bts270},
  timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/bioinformatics/IerselVCBBLDSDMFAMMKNS12.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/LoeweGWMGH11,
  author    = {Laurence Loewe and
               Maria Luisa Guerriero and
               Steven Watterson and
               Stuart L. Moodie and
               Peter Ghazal and
               Jane Hillston},
  title     = {Translation from the Quantified Implicit Process Flow Abstraction
               in {SBGN-PD} Diagrams to Bio-PEPA Illustrated on the Cholesterol Pathway},
  journal   = {Trans. Comp. Sys. Biology},
  volume    = {13},
  pages     = {13--38},
  year      = {2011},
  url       = {https://doi.org/10.1007/978-3-642-19748-2\_2},
  doi       = {10.1007/978-3-642-19748-2\_2},
  timestamp = {Thu, 14 May 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/tcsb/LoeweGWMGH11.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:journals/corr/abs-0910-1410,
  author    = {Laurence Loewe and
               Stuart L. Moodie and
               Jane Hillston},
  editor    = {Ralph{-}Johan Back and
               Ion Petre and
               Erik P. de Vink},
  title     = {Quantifying the implicit process flow abstraction in {SBGN-PD} diagrams
               with Bio-PEPA},
  booktitle = {Proceedings Second International Workshop on Computational Models
               for Cell Processes, {COMPMOD} 2009, Eindhoven, the Netherlands, November
               3, 2009},
  series    = {{EPTCS}},
  volume    = {6},
  pages     = {93--107},
  year      = {2009},
  url       = {https://doi.org/10.4204/EPTCS.6.7},
  doi       = {10.4204/EPTCS.6.7},
  timestamp = {Mon, 15 Jun 2020 16:54:36 +0200},
  biburl    = {https://dblp.org/rec/journals/corr/abs-0910-1410.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GrimesWMBMBG06,
  author    = {G. R. Grimes and
               T. Q. Wen and
               Muriel Mewissen and
               Robert M. Baxter and
               Stuart L. Moodie and
               J. S. Beattie and
               Peter Ghazal},
  title     = {{PDQ} Wizard: automated prioritization and characterization of gene
               and protein lists using biomedical literature},
  journal   = {Bioinform.},
  volume    = {22},
  number    = {16},
  pages     = {2055--2057},
  year      = {2006},
  url       = {https://doi.org/10.1093/bioinformatics/btl342},
  doi       = {10.1093/bioinformatics/btl342},
  timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/journals/bioinformatics/GrimesWMBMBG06.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/MoodieSGG06,
  author    = {Stuart L. Moodie and
               Anatoly A. Sorokin and
               Igor Goryanin and
               Peter Ghazal},
  title     = {A Graphical Notation to describe the Logical Interactions of Biological
               Pathways},
  journal   = {J. Integr. Bioinform.},
  volume    = {3},
  number    = {2},
  year      = {2006},
  url       = {https://doi.org/10.2390/biecoll-jib-2006-36},
  doi       = {10.2390/biecoll-jib-2006-36},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/MoodieSGG06.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
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