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ORCIDKristoffer H. Madsen
Kristoffer Hougaard Madsen
Person information
- affiliation: Danish Research Centre for Magnetic Resonance, Copenhagen University Hospital Hvidovre
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Books and Theses
- 2009
[b1]Kristoffer Hougaard Madsen:
Modelling Strategies for Functional Magnetic Resonance Imaging. Technical University of Denmark, 2009
Journal Articles
- 2023
- [j30]Anke N. Karabanov
, Gaetana Chillemi, Kristoffer Hougaard Madsen, Hartwig Roman Siebner:
Dynamic involvement of premotor and supplementary motor areas in bimanual pinch force control. NeuroImage 276: 120203 (2023) - [j29]Jesper D. Nielsen, Oula Puonti, Rong Xue, Axel Thielscher, Kristoffer Hougaard Madsen:
Evaluating the influence of anatomical accuracy and electrode positions on EEG forward solutions. NeuroImage 277: 120259 (2023) - 2022
- [j28]Søren Asp Fuglsang, Kristoffer H. Madsen, Oula Puonti, Jens Hjortkjær, Hartwig R. Siebner:
Mapping cortico-subcortical sensitivity to 4 Hz amplitude modulation depth in human auditory system with functional MRI. NeuroImage 246: 118745 (2022) - 2021
- [j27]Til Ole Bergmann, Rathiga Varatheeswaran, Colleen A. Hanlon, Kristoffer H. Madsen, Axel Thielscher, Hartwig Roman Siebner:
Concurrent TMS-fMRI for causal network perturbation and proof of target engagement. NeuroImage 237: 118093 (2021) - [j26]David Meder, Finn Rabe, Tobias Morville, Kristoffer H. Madsen, Magnus T. Koudahl, Raymond J. Dolan, Hartwig R. Siebner, Oliver J. Hulme:
Ergodicity-breaking reveals time optimal decision making in humans. PLoS Comput. Biol. 17(9) (2021) - 2020
- [j25]Jesper Løve Hinrich, Kristoffer H. Madsen, Morten Mørup:
The probabilistic tensor decomposition toolbox. Mach. Learn. Sci. Technol. 1(2): 25011 (2020) - [j24]Oula Puonti, Guilherme B. Saturnino, Kristoffer Hougaard Madsen, Axel Thielscher:
Value and limitations of intracranial recordings for validating electric field modeling for transcranial brain stimulation. NeuroImage 208: 116431 (2020) - [j23]Oula Puonti, Koen Van Leemput, Guilherme B. Saturnino, Hartwig R. Siebner, Kristoffer H. Madsen, Axel Thielscher:
Accurate and robust whole-head segmentation from magnetic resonance images for individualized head modeling. NeuroImage 219: 117044 (2020) - 2019
- [j22]Sofie Therese Hansen, Apit Hemakom, Mads Gylling Safeldt, Lærke Karen Krohne, Kristoffer Hougaard Madsen, Hartwig R. Siebner, Danilo P. Mandic, Lars Kai Hansen:
Unmixing Oscillatory Brain Activity by EEG Source Localization and Empirical Mode Decomposition. Comput. Intell. Neurosci. 2019: 5618303:1-5618303:15 (2019) - [j21]Guilherme B. Saturnino, Axel Thielscher, Kristoffer Hougaard Madsen, Thomas R. Knösche, Konstantin Weise:
A principled approach to conductivity uncertainty analysis in electric field calculations. NeuroImage 188: 821-834 (2019) - [j20]Anke N. Karabanov, Friederike Irmen, Kristoffer Hougaard Madsen, Brian Numelin Haagensen, Svend Schulze, Thue Bisgaard, Hartwig Roman Siebner:
Getting to grips with endoscopy - Learning endoscopic surgical skills induces bi-hemispheric plasticity of the grasping network. NeuroImage 189: 32-44 (2019) - [j19]Anne-Marie Dogonowski, Kasper Winther Andersen, Finn Sellebjerg, Karen Schreiber, Kristoffer Hougaard Madsen, Hartwig R. Siebner:
Functional neuroimaging of recovery from motor conversion disorder: A case report. NeuroImage 190: 269-274 (2019) - [j18]Guilherme B. Saturnino, Hartwig Roman Siebner, Axel Thielscher, Kristoffer Hougaard Madsen:
Accessibility of cortical regions to focal TES: Dependence on spatial position, safety, and practical constraints. NeuroImage 203 (2019) - 2018
- [j17]Jesper D. Nielsen, Kristoffer Hougaard Madsen, Oula Puonti, Hartwig R. Siebner, Christian Bauer, Camilla Gøbel Madsen, Guilherme B. Saturnino, Axel Thielscher:
Automatic skull segmentation from MR images for realistic volume conductor models of the head: Assessment of the state-of-the-art. NeuroImage 174: 587-598 (2018) - 2017
- [j16]Rasmus Erbou Røge, Kristoffer Hougaard Madsen, Mikkel N. Schmidt, Morten Mørup:
Infinite von Mises-Fisher Mixture Modeling of Whole Brain fMRI Data. Neural Comput. 29(10): 2712-2741 (2017) - [j15]Guilherme B. Saturnino, Kristoffer Hougaard Madsen, Hartwig Roman Siebner, Axel Thielscher:
How to target inter-regional phase synchronization with dual-site Transcranial Alternating Current Stimulation. NeuroImage 163: 68-80 (2017) - 2016
- [j14]Jesper Løve Hinrich, Sophia Elizabeth Bardenfleth, Rasmus Erbou Røge, Nathan William Churchill, Kristoffer Hougaard Madsen, Morten Mørup:
Archetypal Analysis for Modeling Multisubject fMRI Data. IEEE J. Sel. Top. Signal Process. 10(7): 1160-1171 (2016) - [j13]Nathan William Churchill, Kristoffer Hougaard Madsen, Morten Mørup:
The Functional Segregation and Integration Model: Mixture Model Representations of Consistent and Variable Group-Level Connectivity in fMRI. Neural Comput. 28(10): 2250-2290 (2016) - [j12]Sofie V. Gelskov, Kristoffer Hougaard Madsen, Thomas Z. Ramsøy, Hartwig R. Siebner:
Aberrant neural signatures of decision-making: Pathological gamblers display cortico-striatal hypersensitivity to extreme gambles. NeuroImage 128: 342-352 (2016) - [j11]David Meder, Kristoffer Hougaard Madsen, Oliver J. Hulme, Hartwig R. Siebner:
Chasing probabilities - Signaling negative and positive prediction errors across domains. NeuroImage 134: 180-191 (2016) - 2014
- [j10]Kasper Winther Andersen, Kristoffer Hougaard Madsen, Hartwig Roman Siebner, Mikkel N. Schmidt, Morten Mørup, Lars Kai Hansen:
Non-parametric Bayesian graph models reveal community structure in resting state fMRI. NeuroImage 100: 301-315 (2014) - 2012
- [j9]Peter Mondrup Rasmussen, Trine Julie Abrahamsen, Kristoffer Hougaard Madsen, Lars Kai Hansen:
Nonlinear denoising and analysis of neuroimages with kernel principal component analysis and pre-image estimation. NeuroImage 60(3): 1807-1818 (2012) - [j8]Peter Mondrup Rasmussen, Lars Kai Hansen, Kristoffer Hougaard Madsen, Nathan William Churchill, Stephen C. Strother:
Model sparsity and brain pattern interpretation of classification models in neuroimaging. Pattern Recognit. 45(6): 2085-2100 (2012) - 2011
- [j7]Peter Mondrup Rasmussen, Kristoffer Hougaard Madsen, Torben Ellegaard Lund, Lars Kai Hansen:
Visualization of nonlinear kernel models in neuroimaging by sensitivity maps. NeuroImage 55(3): 1120-1131 (2011) - 2008
- [j6]Daniel J. Jacobsen, Lars Kai Hansen, Kristoffer Hougaard Madsen:
Bayesian Model Comparison in Nonlinear BOLD fMRI Hemodynamics. Neural Comput. 20(3): 738-755 (2008) - [j5]Kirsten Korsholm, Kristoffer Hougaard Madsen, Jette L. Frederiksen, James B. Rowe, Torben Ellegaard Lund:
Cortical neuroplasticity in patients recovering from acute optic neuritis. NeuroImage 42(2): 836-844 (2008) - [j4]Morten Mørup, Lars Kai Hansen, Sidse Marie Arnfred, Lek-Heng Lim, Kristoffer Hougaard Madsen:
Shift-invariant multilinear decomposition of neuroimaging data. NeuroImage 42(4): 1439-1450 (2008) - 2006
- [j3]Axel Larsen, Kristoffer Hougaard Madsen, Torben Ellegaard Lund, Claus Bundesen:
Images of Illusory Motion in Primary Visual Cortex. J. Cogn. Neurosci. 18(7): 1174-1180 (2006) - [j2]Torben Ellegaard Lund, Kristoffer Hougaard Madsen, Karam Sidaros, Wen-Lin Luo, Thomas E. Nichols:
Non-white noise in fMRI: Does modelling have an impact? NeuroImage 29(1): 54-66 (2006) - [j1]Mark Schram Christensen, Thomas Z. Ramsøy, Torben Ellegaard Lund, Kristoffer Hougaard Madsen, James B. Rowe:
An fMRI study of the neural correlates of graded visual perception. NeuroImage 31(4): 1711-1725 (2006)
Conference and Workshop Papers
- 2023
- [c26]Qiang Li, Shujian Yu, Kristoffer H. Madsen, Vince D. Calhoun, Armin Iraji:
Higher-Order Organization in the Human Brain From Matrix-Based Rényi's Entropy. ICASSP Workshops 2023: 1-5 - [c25]Anders S. Olsen, Emil Ortvald, Kristoffer H. Madsen, Mikkel N. Schmidt, Morten Mørup:
Angular Central Gaussian and Watson Mixture Models for Assessing Dynamic Functional Brain Connectivity During a Motor Task. ICASSP Workshops 2023: 1-5 - 2022
- [c24]Pola Schwöbel, Frederik Rahbæk Warburg, Martin Jørgensen, Kristoffer Hougaard Madsen, Søren Hauberg:
Probabilistic spatial transformer networks. UAI 2022: 1749-1759 - 2018
- [c23]Søren Føns Vind Nielsen, Yuri Levin-Schwartz, Diego Vidaurre, Tülay Adali, Vince D. Calhoun, Kristoffer Hougaard Madsen, Lars Kai Hansen, Morten Mørup:
Evaluating Models of Dynamic Functional Connectivity Using Predictive Classification Accuracy. ICASSP 2018: 2566-2570 - [c22]Oula Puonti, Koen Van Leemput, Jesper D. Nielsen, Christian Bauer, Hartwig Roman Siebner, Kristoffer Hougaard Madsen, Axel Thielscher:
Skull segmentation from MR scans using a higher-order shape model based on convolutional restricted Boltzmann machines. Medical Imaging: Image Processing 2018: 1057404 - [c21]Jesper Løve Hinrich, Søren Føns Vind Nielsen, Kristoffer Hougaard Madsen, Morten Mørup:
Variational Bayesian Partially observed non-Negative Tensor Factorization. MLSP 2018: 1-6 - [c20]Søren Føns Vind Nielsen, Diego Vidaurre, Kristoffer Hougaard Madsen, Mikkel N. Schmidt, Morten Mørup:
Testing group differences in state transition structure of dynamic functional connectivity models. PRNI 2018: 1-4 - 2017
- [c19]Jesper Løve Hinrich, Søren Føns Vind Nielsen, Nicolai André Brogaard Riis, Casper T. Eriksen, Jacob Frosig, Marco D. F. Kristensen, Mikkel N. Schmidt, Kristoffer Hougaard Madsen, Morten Mørup:
Scalable group level probabilistic sparse factor analysis. ICASSP 2017: 6314-6318 - [c18]Albert Vilamala, Kristoffer Hougaard Madsen, Lars Kai Hansen:
Deep convolutional neural networks for interpretable analysis of EEG sleep stage scoring. MLSP 2017: 1-6 - [c17]Søren Føns Vind Nielsen, Kristoffer Hougaard Madsen, Mikkel N. Schmidt, Morten Mørup:
Modeling dynamic functional connectivity using a wishart mixture model. PRNI 2017: 1-4 - [c16]Albert Vilamala, Kristoffer Hougaard Madsen, Lars Kai Hansen:
Adaptive smoothing in fMRI data processing neural networks. PRNI 2017: 1-4 - 2016
- [c15]Astrid M. E. Engberg, Kasper Winther Andersen, Morten Mørup, Kristoffer Hougaard Madsen:
Independent vector analysis for capturing common components in fMRI group analysis. PRNI 2016: 1-4 - [c14]Jesper Løve Hinrich, Søren Føns Vind Nielsen, Kristoffer Hougaard Madsen, Morten Mørup:
Variational group-PCA for intrinsic dimensionality determination in fMRI data. PRNI 2016: 1-4 - 2015
- [c13]Rasmus Erbou Røge, Kristoffer Hougaard Madsen, Mikkel N. Schmidt, Morten Mørup:
Unsupervised segmentation of task activated regions in fMRI. MLSP 2015: 1-6 - 2012
- [c12]Peter Mondrup Rasmussen, Tanya Schmah, Kristoffer Hougaard Madsen, Torben Ellegaard Lund, Grigori Yourganov, Stephen C. Strother, Lars Kai Hansen:
Visualization of Nonlinear Classification Models in Neuroimaging - Signed Sensitivity Maps. BIOSIGNALS 2012: 254-263 - [c11]Kasper Winther Andersen, Morten Mørup, Hartwig R. Siebner, Kristoffer Hougaard Madsen, Lars Kai Hansen:
Identifying modular relations in complex brain networks. MLSP 2012: 1-6 - 2011
- [c10]Morten Mørup, Lars Kai Hansen, Kristoffer Hougaard Madsen:
Frequency constrained ShiftCP modeling of neuroimaging data. ACSCC 2011: 127-131 - [c9]Morten Mørup, Lars Kai Hansen, Kristoffer Hougaard Madsen:
Modeling latency and shape changes in trial based neuroimaging data. ACSCC 2011: 439-443 - [c8]Toke Jansen Hansen, Lars Kai Hansen, Kristoffer Hougaard Madsen:
Decoding Complex Cognitive States Online by Manifold Regularization in Real-Time fMRI. MLINI 2011: 76-83 - [c7]Kasper Winther Andersen, Kristoffer Hougaard Madsen, Hartwig R. Siebner, Lars Kai Hansen, Morten Mørup:
Identification of Functional Clusters in the Striatum Using Infinite Relational Modeling. MLINI 2011: 226-233 - 2010
- [c6]Morten Mørup, Kristoffer Hougaard Madsen, Anne-Marie Dogonowski, Hartwig R. Siebner, Lars Kai Hansen:
Infinite Relational Modeling of Functional Connectivity in Resting State fMRI. NIPS 2010: 1750-1758 - 2009
- [c5]Troels Bjerre, Jonas Henriksen, Carsten Haagen Nielsen, Peter Mondrup Rasmussen, Lars Kai Hansen, Kristoffer Hougaard Madsen:
Unified ICA-SPM Analysis of fMRI Experiments - Implementation of an ICA Graphical user Interface for the SPM Pipeline. BIOSIGNALS 2009: 316-321 - 2008
- [c4]Morten Mørup, Kristoffer Hougaard Madsen, Lars Kai Hansen:
Approximate L0 constrained non-negative matrix and tensor factorization. ISCAS 2008: 1328-1331 - 2007
- [c3]Morten Mørup, Kristoffer Hougaard Madsen, Lars Kai Hansen:
Shifted Independent Component Analysis. ICA 2007: 89-96 - 2006
- [c2]Lars Kai Hansen, Kristoffer Hougaard Madsen, Tue Lehn-Schiøler:
Adaptive regularization of noisy linear inverse problems. EUSIPCO 2006: 1-5 - [c1]Daniel J. Jacobsen, Kristoffer Hougaard Madsen, Lars Kai Hansen:
Identification of non-linear models of neural activity in BOLD fMRI. ISBI 2006: 952-955
Informal and Other Publications
- 2024
- [i7]Vladyslav Zalevskyi, Kristoffer Hougaard Madsen:
SYNCS: Synthetic Data and Contrastive Self-Supervised Training for Central Sulcus Segmentation. CoRR abs/2403.15121 (2024) - 2023
- [i6]Qiang Li, Shujian Yu, Kristoffer H. Madsen, Vince D. Calhoun, Armin Iraji:
Higher-order Organization in the Human Brain from Matrix-Based Rényi's Entropy. CoRR abs/2303.11994 (2023) - 2020
- [i5]Pola Schwöbel, Frederik Warburg, Martin Jørgensen, Kristoffer H. Madsen, Søren Hauberg:
Probabilistic Spatial Transformers for Bayesian Data Augmentation. CoRR abs/2004.03637 (2020) - 2018
- [i4]Philip J. H. Jørgensen, Søren Føns Vind Nielsen, Jesper Løve Hinrich, Mikkel N. Schmidt, Kristoffer Hougaard Madsen, Morten Mørup:
Probabilistic PARAFAC2. CoRR abs/1806.08195 (2018) - 2017
- [i3]Albert Vilamala, Kristoffer Hougaard Madsen, Lars Kai Hansen:
Adaptive Smoothing in fMRI Data Processing Neural Networks. CoRR abs/1710.00629 (2017) - [i2]Albert Vilamala, Kristoffer Hougaard Madsen, Lars Kai Hansen:
Deep Convolutional Neural Networks for Interpretable Analysis of EEG Sleep Stage Scoring. CoRR abs/1710.00633 (2017) - 2016
- [i1]Albert Vilamala, Kristoffer Hougaard Madsen, Lars Kai Hansen:
Towards end-to-end optimisation of functional image analysis pipelines. CoRR abs/1610.04079 (2016)
Coauthor Index
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