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Journal Articles
- 2023
[j2]Sam Preston, Mu Wei, Rajesh Rao, Robert Tinn, Naoto Usuyama, Michael Lucas, Yu Gu, Roshanthi Weerasinghe, Soohee Lee, Brian Piening, Paul Tittel, Naveen Valluri, Tristan Naumann, Carlo Bifulco, Hoifung Poon:
Toward structuring real-world data: Deep learning for extracting oncology information from clinical text with patient-level supervision. Patterns 4(4): 100726 (2023)- 2021
- [j1]Muhammad Arif
, Cheng Zhang, Xiangyu Li, Cem Güngör, Bugra Çakmak, Metin Arslantürk, Abdellah Tebani, Berkay Özcan, Oguzhan Subas, Wenyu Zhou, Brian Piening, Hasan Turkez, Linn Fagerberg, Nathan Price, Leroy Hood, Michael Snyder, Jens Nielsen, Mathias Uhlen, Adil Mardinoglu:
iNetModels 2.0: an interactive visualization and database of multi-omics data. Nucleic Acids Res. 49(Webserver-Issue): 271-276 (2021)
Conference and Workshop Papers
- 2024
- [c2]Narmada Naik, Ayush Khandelwal, Mohit Joshi, Madhusudan Atre, Hollis Wright, Kavya Kannan, Scott Hill, Giridhar Mamidipudi, Ganapati Srinivasa, Carlo Bifulco, Brian Piening, Kevin Matlock:
Applying Large Language Models for Causal Structure Learning in Non Small Cell Lung Cancer. ICHI 2024: 688-693 - 2023
- [c1]Cliff Wong, Sheng Zhang, Yu Gu, Christine Moung, Jacob Abel, Naoto Usuyama, Roshanthi Weerasinghe, Brian Piening, Tristan Naumann, Carlo Bifulco, Hoifung Poon:
Scaling Clinical Trial Matching Using Large Language Models: A Case Study in Oncology. MLHC 2023: 846-862
Informal and Other Publications
- 2024
- [i5]Theodore Zhao, Yu Gu, Jianwei Yang, Naoto Usuyama, Ho Hin Lee, Tristan Naumann, Jianfeng Gao, Angela Crabtree, Jacob Abel, Christine Moung, Brian Piening, Carlo Bifulco, Mu Wei, Hoifung Poon, Sheng Wang:
BiomedParse: a biomedical foundation model for image parsing of everything everywhere all at once. CoRR abs/2405.12971 (2024) - 2023
- [i4]Cliff Wong, Sheng Zhang, Yu Gu, Christine Moung, Jacob Abel, Naoto Usuyama, Roshanthi Weerasinghe, Brian Piening, Tristan Naumann, Carlo Bifulco, Hoifung Poon:
Scaling Clinical Trial Matching Using Large Language Models: A Case Study in Oncology. CoRR abs/2308.02180 (2023) - [i3]Javier González Hernández, Cliff Wong, Zelalem Gero, Jass Bagga, Risa Ueno, Isabel Chien, Eduard Oravkin, Emre Kiciman, Aditya V. Nori, Roshanthi Weerasinghe, Rom S. Leidner, Brian Piening, Tristan Naumann, Carlo Bifulco, Hoifung Poon:
TRIALSCOPE: A Unifying Causal Framework for Scaling Real-World Evidence Generation with Biomedical Language Models. CoRR abs/2311.01301 (2023) - [i2]Narmada Naik, Ayush Khandelwal, Mohit Joshi, Madhusudan Atre, Hollis Wright, Kavya Kannan, Scott Hill, Giridhar Mamidipudi, Ganapati Srinivasa, Carlo Bifulco, Brian Piening, Kevin Matlock:
Applying Large Language Models for Causal Structure Learning in Non Small Cell Lung Cancer. CoRR abs/2311.07191 (2023) - 2022
- [i1]Sam Preston, Mu Wei, Rajesh Rao, Robert Tinn, Naoto Usuyama, Michael Lucas, Roshanthi Weerasinghe, Soohee Lee, Brian Piening, Paul Tittel, Naveen Valluri, Tristan Naumann, Carlo Bifulco, Hoifung Poon:
Towards Structuring Real-World Data at Scale: Deep Learning for Extracting Key Oncology Information from Clinical Text with Patient-Level Supervision. CoRR abs/2203.10442 (2022)
Coauthor Index
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