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Karina S. Machado

Karina Santos Machado – Karina dos Santos Machado

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affiliation: Federal University of Rio Grande, RS, Brazil

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Books and Theses

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2011
[b1]
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Karina dos Santos Machado:
Seleção eficiente de conformações de receptor flexível em simulações de docagem molecular. Pontifícia Universidade Católica do Rio Grande do Sul, Brazil, 2011

Journal Articles

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2021
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Maria Kadukova, Karina dos Santos Machado, Pablo Chacón, Sergei Grudinin:
KORP-PL: a coarse-grained knowledge-based scoring function for protein-ligand interactions. Bioinform. 37(7): 943-950 (2021)
[j8]
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Pedro Freire Popiolek, Karina dos Santos Machado, Odorico Machado Mendizabal:
Low overhead performance monitoring for shared infrastructures. Expert Syst. Appl. 171: 114558 (2021)
2020
[j7]
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Timóteo Matthies Rico, Karina dos Santos Machado, Vanessa Pellegrini Fernandes, Samanta Winck Madruga, Mateus Madail Santin, Cristiane Rios Petrarca, Samuel Carvalho Dumith:
Use of Text Messaging (SMS) for the Management of Side Effects in Cancer Patients Undergoing Chemotherapy Treatment: a Randomized Controlled Trial. J. Medical Syst. 44(11): 193 (2020)
2019
[j6]
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Roger Sá da Silva, Luis Fernando Marins, Daniela Volcan Almeida, Karina dos Santos Machado, Adriano Velasque Werhli:
A comparison of classifiers for predicting the class color of fluorescent proteins. Comput. Biol. Chem. 83 (2019)
2017
[j5]
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Timóteo Matthies Rico, Karina dos Santos Machado, Vanessa Pellegrini Fernandes, Samanta Winck Madruga, Patrícia Tuerlinckx Noguez, Camila Rose Guadalupe Barcelos, Mateus Madail Santin, Cristiane Rios Petrarca, Samuel Carvalho Dumith:
Text Messaging (SMS) Helping Cancer Care in Patients Undergoing Chemotherapy Treatment: a Pilot Study. J. Medical Syst. 41(11): 181:1-181:8 (2017)
2016
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Isabel C. Lisboa, Joana Vieira, Sandra M. Aluísio, Karina S. Machado, Nuno Ribeiro, Estêvão Silva, Rita A. Ribeiro, Alfredo F. Pereira:
An MCDM Approach to the Selection of Novel Technologies for Innovative In-Vehicle Information Systems. Int. J. Decis. Support Syst. Technol. 8(1): 43-55 (2016)
2015
[j3]
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Nilzair M. Barreto, Karina S. Machado, Adriano Velasque Werhli:
Inference of regulatory networks with a convergence improved MCMC sampler. BMC Bioinform. 16: 306:1-306:10 (2015)
2012
[j2]
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Rodrigo C. Barros, Ana T. Winck, Karina S. Machado, Márcio P. Basgalupp, André Carlos Ponce de Leon Ferreira de Carvalho, Duncan D. Ruiz, Osmar Norberto de Souza:
Automatic design of decision-tree induction algorithms tailored to flexible-receptor docking data. BMC Bioinform. 13: 310 (2012)
2011
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Karina S. Machado, Ana T. Winck, Duncan D. Ruiz, Osmar Norberto de Souza:
Mining flexible-receptor molecular docking data. WIREs Data Mining Knowl. Discov. 1(6): 532-541 (2011)

Conference and Workshop Papers

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2023
[c21]
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Maurício Dorneles Caldeira Balboni, Oscar Emilio Arrúa Arce, Adriano Velasque Werhli, Karina dos Santos Machado:
Feature Selection Investigation in Machine Learning Docking Scoring Functions. BSB 2023: 58-69
2022
[c20]
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Letícia Kristian Silva Cecotti, Maurício Dorneles Caldeira Balboni, Oscar Emilio Arrúa Arce, Karina dos Santos Machado, Adriano Velasque Werhli:
A Non Exhaustive Search of Exhaustiveness. BSB 2022: 97-108
[c19]
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Jesus Alvarado-Huayhuaz, Daniel Alonso Talaverano-Rojas, Reneé Isabel Huamán Quispe, Maurício Dorneles Caldeira Balboni, Oscar Emilio Arrúa Arce, Adriano Velasque Werhli, Karina dos Santos Machado, Ana Cecilia Valderrama-Negrón:
Search for Zinc Complexes with High Affinity in Pyrazinamidase from Mycobacterium Tuberculosis Resistant to Pyrazinamide. BSB 2022: 109-120
2021
[c18]
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Eduardo Kenji Hasegawa de Freitas, Alex Dias Camargo, Maurício Dorneles Caldeira Balboni, Adriano Velasque Werhli, Karina dos Santos Machado:
Ensemble of Protein Stability upon Point Mutation Predictors. BRACIS (2) 2021: 73-88
2018
[c17]
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Pedro Freire Popiolek, Karina S. Machado, Odorico M. Mendizabal:
Reducing Monitoring Overhead in Virtualized Environments Through Feature Selection. SBRC 2018: 15-28
2017
[c16]
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Caroline Tomasini, Eduardo Nunes Borges, Karina S. Machado, Leonardo R. Emmendorfer:
A Study on the Relationship between Internal and External Validity Indices Applied to Partitioning and Density-based Clustering Algorithms. ICEIS (1) 2017: 89-98
[c15]
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Nilzair M. Barreto, Karina S. Machado, Adriano Velasque Werhli:
Inference of regulatory networks with MCMC sampler guided by mutual information. SAC 2017: 18-23
2016
[c14]
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Vinicius Rosa Seus, Lande Silva Jr., Jorge Gomes, Pedro E. A. da Silva, Adriano Velasque Werhli, Karina S. Machado:
A framework for virtual screening. SAC 2016: 31-36
[c13]
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Caroline Tomasini, Leonardo R. Emmendorfer, Eduardo Nunes Borges, Karina S. Machado:
A methodology for selecting the most suitable cluster validation internal indices. SAC 2016: 901-903
[c12]
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Rafael F. Machado, Rafael F. Pinheiro, Karina S. Machado, Eduardo N. Borges:
Deduplicação de Contatos em Dispositivos Móveis Utilizando Similaridade Textual e Aprendizado de Máquina [Contacts Deduplication in Mobile Devices Using Textual Similarity and Machine Learning]. SBSI 2016: 160-167
2014
[c11]
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Pablo Werlang, Michel Q. Fagundes, Diana Francisca Adamatti, Karina Santos Machado, Andrea von Groll, Pedro E. A. da Silva, Adriano Velasque Werhli:
Estimation of Parameters of Mycobacterium tuberculosis Growth: A Multi-Agent-Based Simulation Approach. IBERAMIA 2014: 599-610
[c10]
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Giovana Jaskulski Gelatti, Vinícius Alves Cassales, André Prisco Vargas, Carla Imaraya de Felippe, Karina dos Santos Machado:
SIGNUM: tradutor Português-Libras baseado em mineração de texto como extensão para navegador web. IHC (Companion) 2014: 69-70
2013
[c9]
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Pablo Werlang, Michel Q. Fagundes, Diana Francisca Adamatti, Karina S. Machado, Andrea von Groll, Pedro E. A. da Silva, Adriano Velasque Werhli:
Multi-Agent-Based Simulation of Mycobacterium Tuberculosis Growth. MABS 2013: 131-142
[c8]
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Giovanni Xavier Perazzo, Ana T. Winck, Karina S. Machado:
A data warehouse as an infrastructure to mine molecular descriptors for virtual screening. SAC 2013: 1335-1336
[c7]
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Matheus Machado dos Santos, Mauricio G. Goulart, Giovana J. Gelatti, Karina S. Machado, Adriano Velasque Werhli, Odorico Machado Mendizabal:
Parallel Algorithm for the HP Protein Folding Problem. WEIT 2013: 72-77
2012
[c6]
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Ana T. Winck, Christian Vahl Quevedo, Karina S. Machado, Osmar Norberto de Souza, Duncan D. Ruiz:
A Comparative Analysis of Public Ligand Databases Based on Molecular Descriptors. BSB 2012: 156-167
2010
[c5]
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Ana T. Winck, Karina S. Machado, Duncan D. Ruiz, Vera Lúcia Strube de Lima:
Association Rules to Identify Receptor and Ligand Structures through Named Entities Recognition. IEA/AIE (3) 2010: 119-128
[c4]
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Karina S. Machado, Ana T. Winck, Duncan D. Ruiz, Osmar Norberto de Souza:
Discretization of Flexible-Receptor Docking Data. BSB 2010: 75-79
2009
[c3]
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Ana T. Winck, Karina S. Machado, Osmar Norberto de Souza, Duncan D. Ruiz:
FReDD: Supporting Mining Strategies through a Flexible-Receptor Docking Database. BSB 2009: 143-146
2008
[c2]
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Karina S. Machado, Evelyn K. Schroeder, Duncan D. Ruiz, Ana Wink, Osmar Norberto de Souza:
Extracting Information from Flexible Receptor-Flexible Ligand Docking Experiments. BSB 2008: 104-114
2007
[c1]
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Karina S. Machado, Evelyn K. Schroeder, Duncan D. Ruiz, Osmar Norberto de Souza:
Automating Molecular Docking with Explicit Receptor Flexibility Using Scientific Workflows. BSB 2007: 1-11

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