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Journal Articles
- 2022
[j9]Francis C. Motta, Robert C. Moseley, Bree Cummins, Anastasia Deckard
, Steven B. Haase:
Conservation of dynamic characteristics of transcriptional regulatory elements in periodic biological processes. BMC Bioinform. 23(1): 94 (2022)- [j8]Breschine Cummins, Francis C. Motta, Robert C. Moseley, Anastasia Deckard, Sophia Campione, Marcio Gameiro, Tomás Gedeon, Konstantin Mischaikow, Steven B. Haase:
Experimental guidance for discovering genetic networks through hypothesis reduction on time series. PLoS Comput. Biol. 18(10): 1010145 (2022) - 2021
- [j7]Alexander Zaitzeff, Nick Leiby, Francis C. Motta, Steven B. Haase, Jed Singer:
Improved datasets and evaluation methods for the automatic prediction of DNA-binding proteins. Bioinform. 38(1): 44-51 (2021) - 2015
- [j6]Jose A. Perea, Anastasia Deckard, Steven B. Haase, John Harer:
SW1PerS: Sliding windows and 1-persistence scoring; discovering periodicity in gene expression time series data. BMC Bioinform. 16: 257:1-257:12 (2015) - 2013
- [j5]Anastasia Deckard, Ron C. Anafi, John B. Hogenesch, Steven B. Haase, John Harer:
Design and analysis of large-scale biological rhythm studies: a comparison of algorithms for detecting periodic signals in biological data. Bioinform. 29(24): 3174-3180 (2013) - [j4]Xin Guo, Allister Bernard, David A. Orlando, Steven B. Haase, Alexander J. Hartemink:
Branching process deconvolution algorithm reveals a detailed cell-cycle transcription program. Proc. Natl. Acad. Sci. USA 110(10): E968-E977 (2013) - 2012
- [j3]Hsiu J. Ho, Tsung-I Lin, Hannah H. Chang, Steven B. Haase, Sui Huang, Saumyadipta Pyne:
Parametric modeling of cellular state transitions as measured with flow cytometry. BMC Bioinform. 13(S-5): S5 (2012) - [j2]Michael B. Mayhew, Xin Guo, Steven B. Haase, Alexander J. Hartemink:
Close Encounters of the Collaborative Kind. Computer 45(3): 24-30 (2012) - 2011
- [j1]Michael B. Mayhew, Joshua W. Robinson, Boyoun Jung, Steven B. Haase, Alexander J. Hartemink:
A generalized model for multi-marker analysis of cell cycle progression in synchrony experiments. Bioinform. 27(13): 295-303 (2011)
Conference and Workshop Papers
- 2019
- [c2]Francis C. Motta, John Harer, Nick Leiby, Franco Marinozzi, Scott Novotney, Gabe Rocklin, Jed Singer, Devin Strickland, Matt Vaughn, Christopher J. Tralie, Rossella Bedini, Fabiano Bini, Gilberto Bini, Hamed Eramian, Marcio Gameiro, Steven B. Haase, Hugh Haddox:
Hyperparameter Optimization of Topological Features for Machine Learning Applications. ICMLA 2019: 1107-1114 - 2011
- [c1]Saumyadipta Pyne, Steven B. Haase, Hsiu J. Ho, Tsung-I Lin:
Parametric modeling of cellular state transitions as measured with flow cytometry. ICCABS 2011: 147-152
Coauthor Index
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