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ORCIDBianca Habermann
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- affiliation: Aix-Marseille University, France
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Journal Articles
- 2023
[j12]Maxime Lucas
, Alex Townsend-Teague, Matteo Neri, Simone Poetto, Arthur Morris, Bianca Habermann, Laurent Tichit:
Phasik: a Python package to identify system states in partially temporal networks. J. Open Source Softw. 8(92): 5872 (2023)- 2022
- [j11]Fabio Marchiano, Margaux Haering, Bianca Hermine Habermann:
The mitoXplorer 2.0 update: integrating and interpreting mitochondrial expression dynamics within a cellular context. Nucleic Acids Res. 50(W1): 490-499 (2022) - 2018
- [j10]Roman Prytuliak, Friedhelm Pfeiffer, Bianca Habermann:
SLALOM, a flexible method for the identification and statistical analysis of overlapping continuous sequence elements in sequence- and time-series data. BMC Bioinform. 19(1): 24:1-24:19 (2018) - [j9]Rasmus Krempel, Pranav Kulkarni, Annie Yim, Ulrich Lang, Bianca Habermann, Peter Frommolt:
Integrative analysis and machine learning on cancer genomics data using the Cancer Systems Biology Database (CancerSysDB). BMC Bioinform. 19(1): 156:1-156:10 (2018) - 2017
- [j8]Roman Prytuliak, Michael Volkmer, Markus Meier, Bianca Habermann:
HH-MOTiF: de novo detection of short linear motifs in proteins by Hidden Markov Model comparisons. Nucleic Acids Res. 45(Webserver-Issue): W470-W477 (2017) - 2015
- [j7]Jose M. Villaveces, Rafael C. Jiménez, Pablo Porras, Noemi del-Toro, Margaret J. Duesbury, Marine Dumousseau, Sandra E. Orchard, H. Choi, Peipei Ping, N. C. Zong, Manor Askenazi, Bianca Habermann, Henning Hermjakob:
Merging and scoring molecular interactions utilising existing community standards: tools, use-cases and a case study. Database J. Biol. Databases Curation 2015 (2015) - 2014
- [j6]Ines Wagner, Michael Volkmer, Malvika Sharan, Jose M. Villaveces, Felix Oswald, Vineeth Surendranath, Bianca Habermann:
morFeus: a web-based program to detect remotely conserved orthologs using symmetrical best hits and orthology network scoring. BMC Bioinform. 15: 263 (2014) - 2013
- [j5]Ron M. Stewart, Cynthia Alexander Rascón, Shulan Tian, Jeff Nie, Chris Barry, Li-Fang Chu, Hamisha Ardalani, Ryan J. Wagner, Mitchell D. Probasco, Jennifer M. Bolin, Ning Leng, Srikumar Sengupta, Michael Volkmer, Bianca Habermann, Elly M. Tanaka, James A. Thomson, Colin N. Dewey:
Comparative RNA-seq Analysis in the Unsequenced Axolotl: The Oncogene Burst Highlights Early Gene Expression in the Blastema. PLoS Comput. Biol. 9(3) (2013) - 2010
- [j4]Vineeth Surendranath, Janet Chusainow, Joachim Hauber, Frank Buchholz, Bianca Habermann:
SeLOX - a locus of recombination site search tool for the detection and directed evolution of site-specific recombination systems. Nucleic Acids Res. 38(Web-Server-Issue): 293-298 (2010) - 2009
- [j3]Helen Oliver, Gayo Diallo, Ed de Quincey, Dimitra Alexopoulou, Bianca Habermann, Patty Kostkova, Michael Schroeder, Simon Jupp, Khaled Khelif, Robert Stevens, Gawesh Jawaheer, Gemma Madle:
A user-centred evaluation framework for the Sealife semantic web browsers. BMC Bioinform. 10(S-10): 14 (2009) - 2006
- [j2]Charles Richard Bradshaw, Vineeth Surendranath, Bianca Habermann:
ProFAT: a web-based tool for the functional annotation of protein sequences. BMC Bioinform. 7: 466 (2006) - 2004
- [j1]Andreas Henschel, Frank Buchholz, Bianca Habermann:
DEQOR: a web-based tool for the design and quality control of siRNAs. Nucleic Acids Res. 32(Web-Server-Issue): 113-120 (2004)
Conference and Workshop Papers
- 2009
- [c2]Ed de Quincey, Helen Oliver, Patty Kostkova, Gawesh Jawaheer, Gemma Madle, Gayo Diallo, Dimitra Alexopoulou, Michael Schroeder, Bianca Habermann, Khaled Khelif, Simon Jupp, Robert Stevens:
Mining for Patterns of Semantic Link Usage: Do Domain Users Actually Like Semantic Browsing? Web Intelligence/IAT Workshops 2009: 50-53 - 2006
- [c1]Michael Schroeder, Albert Burger, Patty Kostkova, Robert Stevens, Bianca Habermann, Rose Dieng-Kuntz:
Sealife: A Semantic Grid Browser for the Life Sciences Applied to the Study of Infectious Diseases. HealthGrid 2006: 167-178
Coauthor Index
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