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2020 – today
- 2024
[c1]Anna Bernasconi, Matteo Chiara, Tommaso Alfonsi, Stefano Ceri:
SENSIBLE: Implementing Data-Driven Early Warning Systems for Future Viral Epidemics. CAiSE Research Projects Exhibition 2024: 18-25- [d4]Tommaso Alfonsi
, Anna Bernasconi, Matteo Chiara, Stefano Ceri:
Supporting data and code for "Data-driven recombination detection in viral genomes". Version 3.3.3-v3. Zenodo, 2024 [all versions]
- [d3]Tommaso Alfonsi, Anna Bernasconi, Matteo Chiara, Stefano Ceri:
Supporting data and code for "Data-driven recombination detection in viral genomes". Version 4. Zenodo, 2024 [all versions] - 2023
- [j9]Pietro Pinoli, Arif Canakoglu, Stefano Ceri, Matteo Chiara, Erika Ferrandi, Luca Minotti, Anna Bernasconi:
VariantHunter: a method and tool for fast detection of emerging SARS-CoV-2 variants. Database J. Biol. Databases Curation 2023 (2023) - [j8]Claudio Lo Giudice, Federico Zambelli, Matteo Chiara, Giulio Pavesi, Marco Antonio Tangaro, Ernesto Picardi, Graziano Pesole:
UTRdb 2.0: a comprehensive, expert curated catalog of eukaryotic mRNAs untranslated regions. Nucleic Acids Res. 51(D1): 337-344 (2023) - [d2]Tommaso Alfonsi, Anna Bernasconi, Matteo Chiara, Stefano Ceri:
Supporting data and code for "Data-driven recombination detection in viral genomes". Version 3.3.3. Zenodo, 2023 [all versions] - [d1]Tommaso Alfonsi, Anna Bernasconi, Matteo Chiara, Stefano Ceri:
Supporting data and code for "Data-driven recombination detection in viral genomes". Version 3.3.3-v2. Zenodo, 2023 [all versions] - 2022
- [j7]Luca Cilibrasi, Pietro Pinoli, Anna Bernasconi, Arif Canakoglu, Matteo Chiara, Stefano Ceri:
ViruClust: direct comparison of SARS-CoV-2 genomes and genetic variants in space and time. Bioinform. 38(7): 1988-1994 (2022) - 2021
- [j6]Matteo Chiara, Anna Maria D'Erchia, Carmela Gissi, Caterina Manzari, Antonio Parisi, Nicoletta Resta, Federico Zambelli, Ernesto Picardi, Giulio Pavesi, David Stephen Horner, Graziano Pesole:
Next generation sequencing of SARS-CoV-2 genomes: challenges, applications and opportunities. Briefings Bioinform. 22(2): 616-630 (2021) - [j5]Matteo Chiara, Federico Zambelli, Marco Antonio Tangaro, Pietro Mandreoli, David Stephen Horner, Graziano Pesole:
CorGAT: a tool for the functional annotation of SARS-CoV-2 genomes. Bioinform. 36(22-23): 5522-5523 (2021) - [j4]Matteo Chiara, Pietro Mandreoli, Marco Antonio Tangaro, Anna Maria D'Erchia, Sandro Sorrentino, Cinzia Forleo, David Stephen Horner, Federico Zambelli, Graziano Pesole:
VINYL: Variant prIoritizatioN bY survivaL analysis. Bioinform. 36(24): 5590-5599 (2021) - [j3]Marco Antonio Tangaro, Pietro Mandreoli, Matteo Chiara, Giacinto Donvito, Marica Antonacci, Antonio Parisi, Angelica Bianco, Angelo Romano, Daniela Manila Bianchi, Davide Cangelosi, Paolo Uva, Ivan Molineris, Vladimir Nosi, Raffaele A. Calogero, Luca Alessandrì, Elena Pedrini, Marina Mordenti, Emanuele Bonetti, Luca Sangiorgi, Graziano Pesole, Federico Zambelli:
Laniakea@ReCaS: exploring the potential of customisable Galaxy on-demand instances as a cloud-based service. BMC Bioinform. 22-S(15): 544 (2021) - 2020
- [j2]Matteo Chiara, Federico Zambelli, Ernesto Picardi, David Stephen Horner, Graziano Pesole:
Critical assessment of bioinformatics methods for the characterization of pathological repeat expansions with single-molecule sequencing data. Briefings Bioinform. 21(6): 1971-1986 (2020) - [j1]Tiziana Castrignanò, Silvia Gioiosa, Tiziano Flati, Mirko Cestari, Ernesto Picardi, Matteo Chiara, Maddalena Fratelli, Stefano Amente, Marco Cirilli, Marco Antonio Tangaro, Giovanni Chillemi, Graziano Pesole, Federico Zambelli:
ELIXIR-IT HPC@CINECA: high performance computing resources for the bioinformatics community. BMC Bioinform. 21-S(10): 352 (2020)
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