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Journal Articles
- 2023
[j3]Ting He, Anas Belouali
, Jessica Patricoski, Harold P. Lehmann, Robert Ball, Valsamo Anagnostou, Kory Kreimeyer, Taxiarchis Botsis:
Trends and opportunities in computable clinical phenotyping: A scoping review. J. Biomed. Informatics 140: 104335 (2023)- [j2]Benjamin Alexander Albert, Yunxiao Yang, Xiaoshan M. Shao, Dipika Singh, Kellie N. Smith, Valsamo Anagnostou, Rachel Karchin:
Deep neural networks predict class I major histocompatibility complex epitope presentation and transfer learn neoepitope immunogenicity. Nat. Mac. Intell. 5(8): 861-872 (2023) - 2020
- [j1]Taxiarchis Botsis, Jennifer E. Fairman, Meghan Bridgid Moran, Valsamo Anagnostou:
Visual storytelling enhances knowledge dissemination in biomedical science. J. Biomed. Informatics 107: 103458 (2020)
Conference and Workshop Papers
- 2024
- [c4]Kory Kreimeyer, Jenna V. Canzoniero, Maria Fatteh, Valsamo Anagnostou, Taxiarchis Botsis:
Using Retrieval-Augmented Generation to Capture Molecularly-Driven Treatment Relationships for Precision Oncology. MIE 2024: 983-987 - [c3]Taxiarchis Botsis, Jonathan Spiker, Kory Kreimeyer, Maria Fatteh, Jamie Wehr, Mimi Najjar, Jessica Tao, Rena Xian, Nicole L. Imamovic, Ander Pindzola, Adrian Dobs, Jenna V. Canzoniero, Valsamo Anagnostou:
A Precision Oncology Platform to Support Genotype-Tailored Therapy Selection. MIE 2024: 1854-1855 - 2022
- [c2]Taxiarchis Botsis, Joseph Murray, Alessandro Leal, Doreen Palsgrove, Wei Wang, James R. White, Victor E. Velculescu, Valsamo Anagnostou:
Natural Language Processing Approaches for Retrieval of Clinically Relevant Genomic Information in Cancer. ICIMTH 2022: 350-353 - 2021
- [c1]Jessica Patricoski, Kory Kreimeyer, Archana Balan, Kent Hardart, Jessica Tao, Valsamo Anagnostou, Taxiarchis Botsis:
An Evaluation of Pretrained BERT Models for Comparing Semantic Similarity Across Unstructured Clinical Trial Texts. ICIMTH 2021: 18-21
Coauthor Index
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