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2020 – today
- 2024
[j8]Yunhee Jeong, Jonathan Ronen, Wolfgang Kopp, Pavlo Lutsik, Altuna Akalin:
scMaui: a widely applicable deep learning framework for single-cell multiomics integration in the presence of batch effects and missing data. BMC Bioinform. 25(1): 257 (2024)- [i2]Ahmet Sarigün, Vedran Franke, Altuna Akalin:
Compass: A Comprehensive Tool for Accurate and Efficient Molecular Docking in Inference and Fine-Tuning. CoRR abs/2406.06841 (2024) - 2022
- [j7]Wolfgang Kopp
, Altuna Akalin, Uwe Ohler:
Simultaneous dimensionality reduction and integration for single-cell ATAC-seq data using deep learning. Nat. Mach. Intell. 4(2): 162-168 (2022)
2010 – 2019
- 2018
- [i1]Jonathan Ronen, Altuna Akalin:
netSmooth: Network-smoothing based imputation for single cell RNA-seq. F1000Research 7: 8 (2018) - 2017
- [j6]Björn A. Grüning, Jörg Fallmann, Dilmurat Yusuf, Sebastian Will, Anika Erxleben, Florian Eggenhofer, Torsten Houwaart, Bérénice Batut, Pavankumar Videm, Andrea Bagnacani, Markus Wolfien, Steffen Lott, Youri Hoogstrate, Wolfgang R. Hess, Olaf Wolkenhauer, Steve Hoffmann, Altuna Akalin, Uwe Ohler, Peter F. Stadler, Rolf Backofen:
The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy. Nucleic Acids Res. 45(Webserver-Issue): W560-W566 (2017) - 2015
- [j5]Altuna Akalin, Vedran Franke, Kristian Vlahovicek, Christopher E. Mason, Dirk Schübeler:
genomation: a toolkit to summarize, annotate and visualize genomic intervals. Bioinform. 31(7): 1127-1129 (2015) - [j4]Kai Blin, Christoph Dieterich, Ricardo Wurmus, Nikolaus Rajewsky, Markus Landthaler, Altuna Akalin:
DoRiNA 2.0 - upgrading the doRiNA database of RNA interactions in post-transcriptional regulation. Nucleic Acids Res. 43(Database-Issue): 160-167 (2015) - 2014
- [j3]Vanja Haberle, Nan Li, Yavor Hadzhiev, Charles Plessy, Christopher Previti, Chirag Nepal, Jochen Gehrig, Xianjun Dong, Altuna Akalin, Ana Maria Suzuki, Wilfred F. J. van IJcken, Olivier Armant, Marco Ferg, Uwe Strähle, Piero Carninci, Ferenc Müller, Boris Lenhard:
Two independent transcription initiation codes overlap on vertebrate core promoters. Nat. 507(7492): 381-385 (2014) - 2013
- [j2]Sheng Li, Francine E. Garrett-Bakelman, Altuna Akalin, Paul Zumbo, Ross Levine, Bik L. To, Ian D. Lewis, Anna L. Brown, Richard J. D'Andrea, Ari Melnick, Christopher E. Mason:
An optimized algorithm for detecting and annotating regional differential methylation. BMC Bioinform. 14(S-5): S10 (2013) - 2010
- [j1]Xianjun Dong, Altuna Akalin, Yogita Sharma, Boris Lenhard:
Translog, a web browser for studying the expression divergence of homologous genes. BMC Bioinform. 11(S-1): 59 (2010)
Coauthor Index
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