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ORCIDAnthony J. Cox
Person information
- affiliation: Illumina Inc., San Diego, CA, USA
- affiliation (2000-2002): Wellcome Trust Sanger Institute, Cambridge, UK
- not to be confused with: Tony Cox 0001
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Journal Articles
- 2018
[j14]Sergii Ivakhno, Eric Roller, Camilla Colombo, Philip Tedder, Anthony J. Cox:
Canvas SPW: calling de novo copy number variants in pedigrees. Bioinform. 34(3): 516-518 (2018)- 2017
- [j13]Rudy Arthur, Ole Schulz-Trieglaff, Anthony J. Cox, Jared O'Connell:
AKT: ancestry and kinship toolkit. Bioinform. 33(1): 142-144 (2017) - [j12]Sergii Ivakhno, Camilla Colombo, Stephen Tanner, Philip Tedder, Stefano Berri, Anthony J. Cox
:
tHapMix: simulating tumour samples through haplotype mixtures. Bioinform. 33(2): 280-282 (2017) - 2016
- [j11]Xiaoyu Chen, Ole Schulz-Trieglaff, Richard Shaw, Bret Barnes, Felix Schlesinger, Morten Källberg, Anthony J. Cox, Semyon Kruglyak, Christopher T. Saunders:
Manta: rapid detection of structural variants and indels for germline and cancer sequencing applications. Bioinform. 32(8): 1220-1222 (2016) - [j10]Rudy Arthur, Jared O'Connell, Ole Schulz-Trieglaff, Anthony J. Cox:
Rapid genotype refinement for whole-genome sequencing data using multi-variate normal distributions. Bioinform. 32(15): 2306-2312 (2016) - [j9]Anthony J. Cox, Fabio Garofalo, Giovanna Rosone, Marinella Sciortino:
Lightweight LCP construction for very large collections of strings. J. Discrete Algorithms 37: 17-33 (2016) - 2015
- [j8]Jared O'Connell, Ole Schulz-Trieglaff, Emma Carlson, Matthew M. Hims, Niall A. Gormley, Anthony J. Cox:
NxTrim: optimized trimming of Illumina mate pair reads. Bioinform. 31(12): 2035-2037 (2015) - 2014
- [j7]Lilian Janin, Giovanna Rosone, Anthony J. Cox:
Adaptive reference-free compression of sequence quality scores. Bioinform. 30(1): 24-30 (2014) - [j6]Lilian Janin, Ole Schulz-Trieglaff, Anthony J. Cox:
BEETL-fastq: a searchable compressed archive for DNA reads. Bioinform. 30(19): 2796-2801 (2014) - 2013
- [j5]Christina Ander, Ole Schulz-Trieglaff, Jens Stoye, Anthony J. Cox:
metaBEETL: high-throughput analysis of heterogeneous microbial populations from shotgun DNA sequences. BMC Bioinform. 14(S-5): S2 (2013) - [j4]Markus J. Bauer, Anthony J. Cox, Giovanna Rosone:
Lightweight algorithms for constructing and inverting the BWT of string collections. Theor. Comput. Sci. 483: 134-148 (2013) - 2012
- [j3]Anthony J. Cox, Markus J. Bauer, Tobias Jakobi, Giovanna Rosone:
Large-scale compression of genomic sequence databases with the Burrows-Wheeler transform. Bioinform. 28(11): 1415-1419 (2012) - 2010
- [j2]Sergii Ivakhno, Tom Royce, Anthony J. Cox, Dirk J. Evers, R. Keira Cheetham, Simon Tavaré:
CNAseg - a novel framework for identification of copy number changes in cancer from second-generation sequencing data. Bioinform. 26(24): 3051-3058 (2010) - 1999
- [j1]Anthony J. Cox, Nicholas J. Higham:
Row-Wise Backward Stable Elimination Methods for the Equality Constrained Least Squares Problem. SIAM J. Matrix Anal. Appl. 21(1): 313-326 (1999)
Conference and Workshop Papers
- 2016
- [c4]Anthony J. Cox, Andrea Farruggia, Travis Gagie, Simon J. Puglisi, Jouni Sirén:
RLZAP: Relative Lempel-Ziv with Adaptive Pointers. SPIRE 2016: 1-14 - 2012
- [c3]Anthony J. Cox, Tobias Jakobi, Giovanna Rosone, Ole Schulz-Trieglaff:
Comparing DNA Sequence Collections by Direct Comparison of Compressed Text Indexes. WABI 2012: 214-224 - [c2]Markus J. Bauer, Anthony J. Cox, Giovanna Rosone, Marinella Sciortino:
Lightweight LCP Construction for Next-Generation Sequencing Datasets. WABI 2012: 326-337 - 2011
- [c1]Markus J. Bauer, Anthony J. Cox, Giovanna Rosone:
Lightweight BWT Construction for Very Large String Collections. CPM 2011: 219-231
Informal and Other Publications
- 2016
- [i5]Anthony J. Cox, Fabio Garofalo, Giovanna Rosone, Marinella Sciortino:
Lightweight LCP Construction for Very Large Collections of Strings. CoRR abs/1605.04098 (2016) - [i4]Anthony J. Cox, Andrea Farruggia, Travis Gagie, Simon J. Puglisi, Jouni Sirén:
RLZAP: Relative Lempel-Ziv with Adaptive Pointers. CoRR abs/1605.04421 (2016) - 2013
- [i3]Lilian Janin, Giovanna Rosone, Anthony J. Cox:
Adaptive reference-free compression of sequence quality scores. CoRR abs/1305.0159 (2013) - [i2]Markus J. Bauer, Anthony J. Cox, Giovanna Rosone, Marinella Sciortino:
Lightweight LCP Construction for Next-Generation Sequencing Datasets. CoRR abs/1305.0160 (2013) - 2012
- [i1]Anthony J. Cox, Markus J. Bauer, Tobias Jakobi, Giovanna Rosone:
Large-scale compression of genomic sequence databases with the Burrows-Wheeler transform. CoRR abs/1205.0192 (2012)
Coauthor Index
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