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ORCIDAlexandre Rossi Paschoal
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Books and Theses
- 2012
[b1]Alexandre Rossi Paschoal:
Bioinformática aplicada em RNomics: estratégias computacionais para caracterização de RNAs não-codificadores. University of São Paulo, Brazil, 2012
Journal Articles
- 2023
- [j8]Simon Orozco-Arias
, Luis Humberto López-Murillo, Mariana S. Candamil-Cortes, Maradey Arias, Paula A. Jaimes, Alexandre Rossi Paschoal, Reinel Tabares-Soto, Gustavo A. Isaza, Romain Guyot:
Inpactor2: a software based on deep learning to identify and classify LTR-retrotransposons in plant genomes. Briefings Bioinform. 24(1) (2023) - 2021
- [j7]Murilo Horacio Pereira da Cruz, Douglas Silva Domingues, Priscila Tiemi Maeda Saito, Alexandre Rossi Paschoal, Pedro Henrique Bugatti:
TERL: classification of transposable elements by convolutional neural networks. Briefings Bioinform. 22(3) (2021) - [j6]Robson Bonidia, Lucas Dias H. Sampaio, Douglas Silva Domingues, Alexandre Rossi Paschoal, Fabrício Martins Lopes, André C. P. L. F. de Carvalho, Danilo Sipoli Sanches:
Feature extraction approaches for biological sequences: a comparative study of mathematical features. Briefings Bioinform. 22(5) (2021) - 2020
- [j5]Robson Parmezan Bonidia, Jaqueline Sayuri Machida, Tatianne da Costa Negri, Wonder Alexandre Luz Alves, André Y. Kashiwabara, Douglas Silva Domingues, André C. P. L. F. de Carvalho, Alexandre Rossi Paschoal, Danilo Sipoli Sanches:
A Novel Decomposing Model With Evolutionary Algorithms for Feature Selection in Long Non-Coding RNAs. IEEE Access 8: 181683-181697 (2020) - 2019
- [j4]Tatianne da Costa Negri, Wonder Alexandre Luz Alves, Pedro Henrique Bugatti, Priscila Tiemi Maeda Saito, Douglas Silva Domingues, Alexandre Rossi Paschoal:
Pattern recognition analysis on long noncoding RNAs: a tool for prediction in plants. Briefings Bioinform. 20(2): 682-689 (2019) - [j3]Bruno Henrique Ribeiro Da Fonseca, Douglas Silva Domingues, Alexandre Rossi Paschoal:
mirtronDB: a mirtron knowledge base. Bioinform. 35(19): 3873-3874 (2019) - 2018
- [j2]Alexandre Rossi Paschoal, Irma Lozada-Chávez, Douglas Silva Domingues, Peter F. Stadler:
ceRNAs in plants: computational approaches and associated challenges for target mimic research. Briefings Bioinform. 19(6): 1273-1289 (2018) - [j1]Daniel Longhi Fernandes Pedro, Alan Péricles Rodrigues Lorenzetti, Douglas Silva Domingues, Alexandre Rossi Paschoal:
PlaNC-TE: a comprehensive knowledgebase of non-coding RNAs and transposable elements in plants. Database J. Biol. Databases Curation 2018: bay078 (2018)
Conference and Workshop Papers
- 2024
- [c6]Silvana C. S. Cardoso, Douglas Silva Domingues, Alexandre Rossi Paschoal, Carlos N. Fischer, Ricardo Cerri:
Classification of LTR Retrotransposons via Interaction Prediction. CIBCB 2024: 1-8 - 2023
- [c5]Alisson G. Chiquitto, Lucas Otávio L. Silva, Liliane Santana Oliveira, Douglas Silva Domingues, Alexandre Rossi Paschoal:
Make No Mistake! Why Do Tools Make Incorrect Long Non-coding RNA Classification? BSB 2023: 36-45 - 2022
- [c4]Alisson G. Chiquitto, Lucas Otávio L. Silva, Liliane S. Oliveira, Douglas Silva Domingues, Alexandre Rossi Paschoal:
Impact of sequencing technologies on long non-coding RNA computational identification. BIBM 2022: 3299-3306 - 2020
- [c3]Tatianne da Costa Negri, Alexandre Rossi Paschoal, Wonder Alexandre Luz Alves:
Comparison tools for lncRNA identification: analysis among plants and humans. CIBCB 2020: 1-8 - 2019
- [c2]Robson Parmezan Bonidia, André Carlos Ponce de Leon Ferreira de Carvalho, Alexandre Rossi Paschoal, Danilo Sipoli Sanches:
Selecting the Most Relevant Features for the Identification of Long Non-Coding RNAs in Plants. BRACIS 2019: 539-544 - [c1]Murilo Horacio Pereira da Cruz, Priscila T. M. Saito, Alexandre Rossi Paschoal, Pedro Henrique Bugatti:
Classification of Transposable Elements by Convolutional Neural Networks. ICAISC (2) 2019: 157-168
Coauthor Index
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