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Ryan Remy Brinkman
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2010 – 2019
- 2018
- [j21]Markus Lux
, Ryan Remy Brinkman
, Cédric Chauve
, Adam Laing, Anna Lorenc
, Lucie Abeler-Dörner, Barbara Hammer
:
flowLearn: fast and precise identification and quality checking of cell populations in flow cytometry. Bioinform. 34(13): 2245-2253 (2018) - [j20]Benedikt G. Brink
, Justin Meskas, Ryan Remy Brinkman
:
ddPCRclust: an R package and Shiny app for automated analysis of multiplexed ddPCR data. Bioinform. 34(15): 2687-2689 (2018) - 2015
- [j19]Mehrnoush Malek, Mohammad Jafar Taghiyar, Lauren Chong, Greg Finak
, Raphael Gottardo
, Ryan Remy Brinkman:
flowDensity: reproducing manual gating of flow cytometry data by automated density-based cell population identification. Bioinform. 31(4): 606-607 (2015) - [j18]Mélanie Courtot
, Justin Meskas, Alexander D. Diehl
, Radina Droumeva, Raphael Gottardo
, Adrin Jalali, Mohammad Jafar Taghiyar, Holden T. Maecker, J. Philip McCoy, Alan Ruttenberg
, Richard H. Scheuermann, Ryan Remy Brinkman:
flowCL: ontology-based cell population labelling in flow cytometry. Bioinform. 31(8): 1337-1339 (2015) - [j17]Kieran O'Neill
, Nima Aghaeepour, Jeremy Parker
, Donna Hogge
, Aly Karsan, Bakul Dalal, Ryan Remy Brinkman:
Deep profiling of multitube flow cytometry data. Bioinform. 31(10): 1623-1631 (2015) - 2014
- [j16]Kieran O'Neill
, Adrin Jalali, Nima Aghaeepour, Holger H. Hoos
, Ryan Remy Brinkman:
Enhanced flowType/RchyOptimyx: a Bioconductor pipeline for discovery in high-dimensional cytometry data. Bioinform. 30(9): 1329-1330 (2014) - 2013
- [j15]Habil Zare, Gholamreza Haffari, Arvind Gupta, Ryan Remy Brinkman:
Scoring relevancy of features based on combinatorial analysis of Lasso with application to lymphoma diagnosis. BMC Genom. 14(S-1): S14 (2013) - [j14]Kieran O'Neill
, Nima Aghaeepour, Josef Spidlen, Ryan Remy Brinkman:
Flow Cytometry Bioinformatics. PLoS Comput. Biol. 9(12) (2013) - [j13]Josef Spidlen, Aaron Barsky, Karin Breuer, Peter Carr, Marc-Danie Nazaire, Barbara A. Hill, Yu Qian, Ted Liefeld, Michael Reich
, Jill P. Mesirov, Peter Wilkinson, Richard H. Scheuermann, Rafick-Pierre Sekaly, Ryan Remy Brinkman:
GenePattern Flow Cytometry Suite. Source Code Biol. Medicine 8: 14 (2013) - [c6]Mélanie Courtot, Jie Zheng, Christian J. Stoeckert Jr., Ryan Remy Brinkman, Alan Ruttenberg:
Diagnostic criteria and clinical guidelines standardization to automate case classification. ICBO 2013: 101-104 - 2012
- [j12]Nima Aghaeepour, Pratip K. Chattopadhyay
, Anuradha Ganesan, Kieran O'Neill
, Habil Zare
, Adrin Jalali, Holger H. Hoos
, Mario Roederer, Ryan Remy Brinkman:
Early immunologic correlates of HIV protection can be identified from computational analysis of complex multivariate T-cell flow cytometry assays. Bioinform. 28(7): 1009-1016 (2012) - [c5]Mélanie Courtot, Ryan Remy Brinkman, Alan Ruttenberg:
Adverse events following immunization: reporting standardization, automatic case classification and signal detection. ICBO 2012 - 2011
- [j11]Philippe Rocca-Serra, Alan Ruttenberg
, Martin J. O'Connor, Patricia L. Whetzel, Daniel Schober
, Jay Greenbaum, Mélanie Courtot
, Ryan Remy Brinkman, Susanna-Assunta Sansone, Richard H. Scheuermann
, Bjoern Peters:
Overcoming the ontology enrichment bottleneck with Quick Term Templates. Appl. Ontology 6(1): 13-22 (2011) - [j10]Mélanie Courtot
, Frank Gibson
, Allyson L. Lister
, James Malone, Daniel Schober
, Ryan Remy Brinkman, Alan Ruttenberg
:
MIREOT: The minimum information to reference an external ontology term. Appl. Ontology 6(1): 23-33 (2011) - [c4]Mélanie Courtot, Ryan Remy Brinkman:
Towards an Adverse Event Reporting Ontology. ICBO 2011 - [c3]Mélanie Courtot, Ryan Remy Brinkman, Alan Ruttenberg:
Reporting Adverse Events: Basis for a Common Representation. ICBO 2011 - [c2]Mélanie Courtot, Chris Mungall, Ryan Remy Brinkman, Alan Ruttenberg:
Building the OBO Foundry - One Policy at a Time. ICBO 2011 - 2010
- [j9]Ryan Remy Brinkman, Mélanie Courtot, Dirk Derom, Jennifer Fostel, Yongqun He, Phillip W. Lord, James Malone, Helen E. Parkinson, Björn Peters, Philippe Rocca-Serra, Alan Ruttenberg, Susanna-Assunta Sansone, Larisa N. Soldatova, Christian J. Stoeckert Jr., Jessica A. Turner, Jie Zheng, et al.:
Modeling biomedical experimental processes with OBI. J. Biomed. Semant. 1(S-1): S7 (2010) - [j8]Habil Zare
, Parisa Shooshtari, Arvind Gupta, Ryan Remy Brinkman
:
Data reduction for spectral clustering to analyze high throughput flow cytometry data. BMC Bioinform. 11: 403 (2010)
2000 – 2009
- 2009
- [j7]Greg Finak
, Ali Bashashati, Ryan Remy Brinkman
, Raphael Gottardo
:
Merging Mixture Components for Cell Population Identification in Flow Cytometry. Adv. Bioinformatics 2009: 247646:1-247646:12 (2009) - [j6]Errol Strain, Florian Hahne, Ryan Remy Brinkman
, Perry Haaland:
Analysis of High-Throughput Flow Cytometry Data Using plateCore. Adv. Bioinformatics 2009: 356141:1-356141:10 (2009) - [j5]Raphael Gottardo
, Ryan Remy Brinkman, George Luta
, Matthew P. Wand
:
Recent Bioinformatics Advances in the Analysis of High Throughput Flow Cytometry Data. Adv. Bioinformatics 2009: 461763:1-461763:2 (2009) - [j4]Ali Bashashati, Ryan Remy Brinkman
:
A Survey of Flow Cytometry Data Analysis Methods. Adv. Bioinformatics 2009: 584603:1-584603:19 (2009) - [j3]Florian Hahne, Nolwenn LeMeur
, Ryan Remy Brinkman, Byron Ellis, Perry Haaland, Deepayan Sarkar
, Josef Spidlen, Errol Strain
, Robert Gentleman:
flowCore: a Bioconductor package for high throughput flow cytometry. BMC Bioinform. 10 (2009) - [j2]Kenneth Lo, Florian Hahne, Ryan Remy Brinkman
, Raphael Gottardo
:
flowClust: a Bioconductor package for automated gating of flow cytometry data. BMC Bioinform. 10 (2009) - [j1]Yu Qian, Olga Tchuvatkina, Josef Spidlen, Peter Wilkinson, Maura Gasparetto, Andrew R. Jones
, Frank J. Manion
, Richard H. Scheuermann
, Rafick-Pierre Sekaly, Ryan Remy Brinkman:
FuGEFlow: data model and markup language for flow cytometry. BMC Bioinform. 10 (2009) - 2008
- [c1]Mélanie Courtot, William J. Bug, Frank Gibson, Allyson L. Lister, James Malone, Daniel Schober, Ryan Remy Brinkman, Alan Ruttenberg:
The OWL of Biomedical Investigations. OWLED 2008
Coauthor Index
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last updated on 2024-04-24 23:21 CEST by the dblp team
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