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Ali Bashashati
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Journal Articles
- 2019
- [j9]Tyler Funnell
, Allen W. Zhang
, Diljot Grewal, Steven McKinney, Ali Bashashati, Yi Kan Wang, Sohrab P. Shah:
Integrated structural variation and point mutation signatures in cancer genomes using correlated topic models. PLoS Comput. Biol. 15(2) (2019) - 2012
- [j8]Jiarui Ding, Ali Bashashati, Andrew Roth, Arusha Oloumi, Kane Tse, Thomas Zeng, Gholamreza Haffari, Martin Hirst, Marco A. Marra, Anne Condon, Sam Aparicio
, Sohrab P. Shah:
Feature-based classifiers for somatic mutation detection in tumour-normal paired sequencing data. Bioinform. 28(2): 167-175 (2012) - [j7]Andrew Roth, Jiarui Ding, Ryan D. Morin, Anamaria Crisan, Gavin Ha
, Ryan Giuliany, Ali Bashashati, Martin Hirst, Gulisa Turashvili
, Arusha Oloumi, Marco A. Marra, Sam Aparicio
, Sohrab P. Shah:
JointSNVMix: a probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing data. Bioinform. 28(7): 907-913 (2012) - 2009
- [j6]Greg Finak
, Ali Bashashati, Ryan Remy Brinkman
, Raphael Gottardo
:
Merging Mixture Components for Cell Population Identification in Flow Cytometry. Adv. Bioinformatics 2009: 247646:1-247646:12 (2009) - [j5]Ali Bashashati, Ryan Remy Brinkman
:
A Survey of Flow Cytometry Data Analysis Methods. Adv. Bioinformatics 2009: 584603:1-584603:19 (2009) - 2007
- [j4]Ali Bashashati, Rabab K. Ward, Gary E. Birch:
Towards Development of a 3-State Self-Paced Brain-Computer Interface. Comput. Intell. Neurosci. 2007 (2007) - 2006
- [j3]Mehrdad Fatourechi, Ali Bashashati, Gary E. Birch, Rabab K. Ward:
Automatic user customization for improving the performance of a self-paced brain interface system. Medical Biol. Eng. Comput. 44(12): 1093-1104 (2006) - [j2]Ali Bashashati, Borna Noureddin, Rabab K. Ward, Peter D. Lawrence, Gary E. Birch:
An experimental study to investigate the effects of a motion tracking electromagnetic sensor during EEG data acquisition. IEEE Trans. Biomed. Eng. 53(3): 559-563 (2006) - 2004
- [j1]Jaimie F. Borisoff, Steven G. Mason, Ali Bashashati, Gary E. Birch:
Brain-computer interface design for asynchronous control applications: improvements to the LF-ASD asynchronous brain switch. IEEE Trans. Biomed. Eng. 51(6): 985-992 (2004)
Conference and Workshop Papers
- 2023
- [c8]Puria Azadi Moghadam, Sanne Van Dalen, Karina C. Martin, Jochen Lennerz, Stephen Yip, Hossein Farahani, Ali Bashashati:
A Morphology Focused Diffusion Probabilistic Model for Synthesis of Histopathology Images. WACV 2023: 1999-2008 - 2022
- [c7]Ramin Nakhli
, Amirali Darbandsari, Hossein Farahani, Ali Bashashati
:
CCRL: Contrastive Cell Representation Learning. ECCV Workshops (7) 2022: 397-407 - 2016
- [c6]Hossein Bashashati, Rabab K. Ward, Ali Bashashati:
Bayesian optimization of BCI parameters. CCECE 2016: 1-5 - [c5]Hossein Bashashati, Rabab K. Ward, Ali Bashashati, Amr M. Mohamed:
Neural Network Conditional Random Fields for Self-Paced Brain Computer Interfaces. ICMLA 2016: 939-943 - 2015
- [c4]Hossein Bashashati, Rabab K. Ward, Ali Bashashati:
Hidden Markov Support Vector Machines for Self-Paced Brain Computer Interfaces. ICMLA 2015: 382-385 - 2010
- [c3]Mahsa T. Pourazad, Panos Nasiopoulos, Ali Bashashati:
Random forests-based 2D-to-3D video conversion. ICECS 2010: 150-153 - 2006
- [c2]Ali Bashashati, Rabab K. Ward, Gary E. Birch:
Detection of Hand Extension Movements in the Context of a 3-State Asynchronous Brain Interface. ICASSP (5) 2006: 897-900 - 2005
- [c1]Mehrdad Fatourechi, Ali Bashashati, Rabab K. Ward, Gary E. Birch:
A hybrid genetic algorithm approach for improving the performance of the LF-ASD brain computer interface. ICASSP (5) 2005: 345-348
Informal and Other Publications
- 2023
- [i6]Ramin Nakhli, Puria Azadi Moghadam, Haoyang Mi, Hossein Farahani, Alexander Baras, C. Blake Gilks, Ali Bashashati:
AMIGO: Sparse Multi-Modal Graph Transformer with Shared-Context Processing for Representation Learning of Giga-pixel Images. CoRR abs/2303.00865 (2023) - [i5]Ramin Nakhli, Allen W. Zhang, Hossein Farahani, Amirali Darbandsari, Elahe Shenasa, Sidney Thiessen, Katy Milne, Jessica McAlpine, Brad Nelson, C. Blake Gilks, Ali Bashashati:
VOLTA: an Environment-Aware Contrastive Cell Representation Learning for Histopathology. CoRR abs/2303.04696 (2023) - 2022
- [i4]Ramin Nakhli, Amirali Darbandsari, Hossein Farahani, Ali Bashashati:
CCRL: Contrastive Cell Representation Learning. CoRR abs/2208.06445 (2022) - [i3]Puria Azadi Moghadam, Sanne Van Dalen, Karina C. Martin, Jochen Lennerz, Stephen Yip, Hossein Farahani, Ali Bashashati:
A Morphology Focused Diffusion Probabilistic Model for Synthesis of Histopathology Images. CoRR abs/2209.13167 (2022) - [i2]Roozbeh Bazargani, Ladan Fazli, Larry Goldenberg, Martin E. Gleave, Ali Bashashati, Septimiu Salcudean:
Multi-Scale Relational Graph Convolutional Network for Multiple Instance Learning in Histopathology Images. CoRR abs/2212.08781 (2022) - 2020
- [i1]Yiping Wang, David Farnell, Hossein Farahani, Mitchell Nursey, Basile Tessier-Cloutier, Steven J. M. Jones, David G. Huntsman, C. Blake Gilks, Ali Bashashati:
Classification of Epithelial Ovarian Carcinoma Whole-Slide Pathology Images Using Deep Transfer Learning. CoRR abs/2005.10957 (2020)
Coauthor Index

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