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ORCIDChengxin Zhang
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Journal Articles
- 2024
[j31]Zi Liu, Chengxin Zhang, Qidi Zhang, Yang Zhang
, Dong-Jun Yu:
TM-search: An Efficient and Effective Tool for Protein Structure Database Search. J. Chem. Inf. Model. 64(3): 1043-1049 (2024)- [j30]Chengxin Zhang, Bangyi Tao, Yunzhou Li, Libo Ai, Yixian Zhu, Liansong Liang, Haiqing Huang, Changpeng Li:
Evaluation of Rayleigh-Corrected Reflectance on Remote Detection of Algal Blooms in Optically Complex Coasts of East China Sea. Remote. Sens. 16(13): 2304 (2024) - [j29]Xingyu Chen, Liye Zhao, Jiawen Xu, Zhikang Liu, Chengxin Zhang, Luxiang Xu, Ning Guo:
A Self-Supervised Contrastive Denoising Autoencoder-Based Noise Suppression Method for Micro Thrust Measurement Signals Processing. IEEE Trans. Instrum. Meas. 73: 1-17 (2024) - 2023
- [j28]Chengxin Zhang, Anna Marie Pyle:
PDC: a highly compact file format to store protein 3D coordinates. Database J. Biol. Databases Curation 2023 (2023) - [j27]Chengxin Zhang:
BeEM: fast and faithful conversion of mmCIF format structure files to PDB format. BMC Bioinform. 24(1): 260 (2023) - [j26]Bo Li, Cheng Liu, Qihou Hu, Mingzhai Sun, Chengxin Zhang, Yizhi Zhu, Ting Liu, Yike Guo, Gregory R. Carmichael, Meng Gao:
A Deep Learning Approach to Increase the Value of Satellite Data for PM2.5 Monitoring in China. Remote. Sens. 15(15): 3724 (2023) - [j25]Zhikang Liu, Xingyu Chen, Jiawen Xu, Chengxin Zhang, Luxiang Xu, Ning Guo, Liye Zhao, Ruqiang Yan:
High-Accurate Robust Total Variation Denoising Algorithm With Adjustable Exponential Upper Bound Function for Micro-Thrust Measurement. IEEE Trans. Instrum. Meas. 72: 1-18 (2023) - 2022
- [j24]Suifu Cheng, Fajie Wang, Guozheng Wu, Chengxin Zhang:
A semi-analytical and boundary-type meshless method with adjoint variable formulation for acoustic design sensitivity analysis. Appl. Math. Lett. 131: 108068 (2022) - [j23]Elijah A. MacCarthy, Chengxin Zhang, Yang Zhang, Dukka B. KC:
GPU-I-TASSER: a GPU accelerated I-TASSER protein structure prediction tool. Bioinform. 38(6): 1754-1755 (2022) - [j22]Morgan Shine, Chengxin Zhang, Anna Marie Pyle:
AMIGOS III: pseudo-torsion angle visualization and motif-based structure comparison of nucleic acids. Bioinform. 38(10): 2937-2939 (2022) - [j21]Yi-Heng Zhu, Chengxin Zhang, Yan Liu, Gilbert S. Omenn, Peter L. Freddolino, Dong-Jun Yu, Yang Zhang:
TripletGO: Integrating Transcript Expression Profiles with Protein Homology Inferences for Gene Function Prediction. Genom. Proteom. Bioinform. 20(5): 1013-1027 (2022) - [j20]Xiaogen Zhou, Yang Li, Chengxin Zhang, Wei Zheng, Guijun Zhang, Yang Zhang:
Progressive assembly of multi-domain protein structures from cryo-EM density maps. Nat. Comput. Sci. 2(4): 265-275 (2022) - [j19]Yi-Heng Zhu, Chengxin Zhang, Dong-Jun Yu, Yang Zhang:
Integrating unsupervised language model with triplet neural networks for protein gene ontology prediction. PLoS Comput. Biol. 18(12): 1010793 (2022) - [j18]Chunhui Zhao, Chengxin Zhang, Jinan Lin, Shuntian Wang, Hanyang Liu, Hongyu Wu, Cheng Liu:
Variations of Urban NO2 Pollution during the COVID-19 Outbreak and Post-Epidemic Era in China: A Synthesis of Remote Sensing and In Situ Measurements. Remote. Sens. 14(2): 419 (2022) - [j17]Xinhua Hong, Peng Zhang, Yanmeng Bi, Cheng Liu, Youwen Sun, Wei Wang, Zeqing Chen, Hao Yin, Chengxin Zhang, Yuan Tian, Jianguo Liu:
Retrieval of Global Carbon Dioxide From TanSat Satellite and Comprehensive Validation With TCCON Measurements and Satellite Observations. IEEE Trans. Geosci. Remote. Sens. 60: 1-16 (2022) - 2021
- [j16]Dongfeng Yang, Chengxin Zhang, Chao Jiang, Xiaojun Liu, Yiran Shen:
Interval Method Based Optimal Scheduling of Regional Multi-Microgrids With Uncertainties of Renewable Energy. IEEE Access 9: 53292-53305 (2021) - [j15]Yang Li, Chengxin Zhang, Eric W. Bell, Wei Zheng, Xiaogen Zhou, Dong-Jun Yu, Yang Zhang:
Deducing high-accuracy protein contact-maps from a triplet of coevolutionary matrices through deep residual convolutional networks. PLoS Comput. Biol. 17(3) (2021) - [j14]Yizhi Zhu, Qihou Hu, Meng Gao, Chun Zhao, Chengxin Zhang, Ting Liu, Yuan Tian, Liu Yan, Wenjing Su, Xinhua Hong, Cheng Liu:
Quantifying Contributions of Local Emissions and Regional Transport to NOX in Beijing Using TROPOMI Constrained WRF-Chem Simulation. Remote. Sens. 13(9): 1798 (2021) - [j13]Chao Tong, Chengxin Zhang, Cheng Liu:
Investigation on the Relationship between Satellite Air Quality Measurements and Industrial Production by Generalized Additive Modeling. Remote. Sens. 13(16): 3137 (2021) - [j12]Lingling Ma, Yongguang Zhao, Chuanrong Li, Philippe Goryl, Cheng Liu, Jieying He, Pucai Wang, Marc Bouvet, Ran Zhao, Ning Wang, Yaokai Liu, Caixia Gao, Bart Dils, Chengxin Zhang, Ka Lok Chan, Xinhong Wang:
Calibration and Data Quality Assurance Technical Advancements for Quantitative Remote Sensing in the DRAGON 4 Project. Remote. Sens. 13(24): 4996 (2021) - 2020
- [j11]Chengxin Zhang, Wei Zheng, S. M. Mortuza, Yang Li, Yang Zhang:
DeepMSA: constructing deep multiple sequence alignment to improve contact prediction and fold-recognition for distant-homology proteins. Bioinform. 36(7): 2105-2112 (2020) - [j10]Xiaoqiong Wei, Chengxin Zhang, Peter L. Freddolino, Yang Zhang, Zhiyong Lu:
Detecting Gene Ontology misannotations using taxon-specific rate ratio comparisons. Bioinform. 36(16): 4383-4388 (2020) - [j9]Shuntian Wang, Cheng Liu, Wenqiang Zhang, Nan Hao, Sebastian Gimeno-Garcia, Chengzhi Xing, Chengxin Zhang, Wenjing Su, Jianguo Liu:
Development and Application of HECORA Cloud Retrieval Algorithm Based On the O2-O2 477 nm Absorption Band. Remote. Sens. 12(18): 3039 (2020) - 2019
- [j8]Sha Gong, Chengxin Zhang, Yang Zhang:
RNA-align: quick and accurate alignment of RNA 3D structures based on size-independent TM-scoreRNA. Bioinform. 35(21): 4459-4461 (2019) - [j7]Yang Li, Jun Hu, Chengxin Zhang, Dong-Jun Yu, Yang Zhang:
ResPRE: high-accuracy protein contact prediction by coupling precision matrix with deep residual neural networks. Bioinform. 35(22): 4647-4655 (2019) - [j6]Wei Zheng, Chengxin Zhang, Eric W. Bell, Yang Zhang:
I-TASSER gateway: A protein structure and function prediction server powered by XSEDE. Future Gener. Comput. Syst. 99: 73-85 (2019) - [j5]Wei Zheng, Chengxin Zhang, Qiqige Wuyun, Robin Pearce, Yang Li, Yang Zhang:
LOMETS2: improved meta-threading server for fold-recognition and structure-based function annotation for distant-homology proteins. Nucleic Acids Res. 47(Webserver-Issue): W429-W436 (2019) - [j4]Wei Zheng, Qiqige Wuyun, Yang Li, S. M. Mortuza, Chengxin Zhang, Robin Pearce, Jishou Ruan, Yang Zhang:
Detecting distant-homology protein structures by aligning deep neural-network based contact maps. PLoS Comput. Biol. 15(10) (2019) - 2018
- [j3]Chengxin Zhang, Cheng Liu, Yang Wang, Fuqi Si, Haijin Zhou, Minjie Zhao, Wenjing Su, Wenqiang Zhang, Ka Lok Chan, Xiong Liu, Pinhua Xie, Jianguo Liu, Thomas Wagner:
Preflight Evaluation of the Performance of the Chinese Environmental Trace Gas Monitoring Instrument (EMI) by Spectral Analyses of Nitrogen Dioxide. IEEE Trans. Geosci. Remote. Sens. 56(6): 3323-3332 (2018) - 2017
- [j2]Giacomo Janson, Chengxin Zhang, Maria Giulia Prado, Alessandro Paiardini:
PyMod 2.0: improvements in protein sequence-structure analysis and homology modeling within PyMOL. Bioinform. 33(3): 444-446 (2017) - [j1]Chengxin Zhang, Peter L. Freddolino, Yang Zhang:
COFACTOR: improved protein function prediction by combining structure, sequence and protein-protein interaction information. Nucleic Acids Res. 45(Webserver-Issue): W291-W299 (2017)
Conference and Workshop Papers
- 2023
- [c6]Ziheng Ju, Huajie Tang, Abhishek Kandwal, Chengxin Zhang, Zedong Nie:
A Voxel Vascular Structure-based Mannequin-like Arm Electromagnetic Model for Radio Frequency Biomedical Sensors. EMBC 2023: 1-4 - [c5]Chengcheng Fu, Dexiang Jia, Donghai Xuan, Dong He, Yihong Zhang, Chengxin Zhang:
Prdiction and Analysis on Provincial Carbon Emissions and Carbon Peak. PCCNT 2023: 27:1-27:8 - [c4]Dexiang Jia, Chengcheng Fu, Ganyun Lv, Donghai Xuan, Dong He, Yihong Zhang, Chengxin Zhang:
Spatial-temporal Monitoring Modeling of EV Carbon Emission Considering End-users?? Behavioral Decisions. PCCNT 2023: 33:1-33:7 - 2022
- [c3]Yumeng Hao, Xiaoming Wang, Yaguang Lin, Chengxin Zhang:
Dynamics Modeling of Knowledge Dissemination Process in Online Social Networks. CWSN 2022: 145-153 - [c2]Chengxin Zhang, Xiaoming Wang, Yaguang Lin, Yumeng Hao:
The Impact of Time Delay and User's Behavior on the Dissemination Process of Rumor in Mobile Social Networks. CWSN 2022: 154-161 - 2019
- [c1]Chengxin Zhang, Huiquan Zhang, Di He, Fei Hao:
Evaluation Approach Based upon Knowledge Delivery Process in Smart Teaching Environment. DASC/PiCom/DataCom/CyberSciTech 2019: 277-281
Informal and Other Publications
- 2024
- [i2]Marc Harary, Chengxin Zhang:
Kirigami: large convolutional kernels improve deep learning-based RNA secondary structure prediction. CoRR abs/2406.02381 (2024) - 2022
- [i1]Lilit Avetisyan, Chengxin Zhang, Sue Bai, Ehsan Moradi-Pari, Fred Feng, Shan Bao, Feng Zhou:
Design a Sustainable Micro-mobility Future: Trends and Challenges in the United States and European Union Using Natural Language Processing Techniques. CoRR abs/2210.11714 (2022)
Coauthor Index
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