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Journal Articles
- 2024
[j9]Aokun Chen
, Yunpeng Zhao, Yi Zheng, Hui Hu, Xia Hu, Jennifer N. Fishe, William R. Hogan, Elizabeth A. Shenkman, Yi Guo, Jiang Bian:
Exploring the Relation between Contextual Social Determinants of Health and COVID-19 Occurrence and Hospitalization. Informatics 11: 4 (2024)- [j8]Cheng Peng, Xi Yang, Aokun Chen, Zehao Yu, Kaleb E. Smith, Anthony B. Costa, Mona G. Flores, Jiang Bian, Yonghui Wu:
Generative large language models are all-purpose text analytics engines: text-to-text learning is all your need. J. Am. Medical Informatics Assoc. 31(9): 1892-1903 (2024) - [j7]Cheng Peng, Xi Yang, Kaleb E. Smith, Zehao Yu, Aokun Chen, Jiang Bian, Yonghui Wu:
Model tuning or prompt Tuning? a study of large language models for clinical concept and relation extraction. J. Biomed. Informatics 153: 104630 (2024) - [j6]Shuang Yang, Xi Yang, Tianchen Lyu, James L. Huang, Aokun Chen, Xing He, Dejana Braithwaite, Hiren J. Mehta, Yonghui Wu, Yi Guo, Jiang Bian:
Extracting Pulmonary Nodules and Nodule Characteristics from Radiology Reports of Lung Cancer Screening Patients Using Transformer Models. J. Heal. Informatics Res. 8(3): 463-477 (2024) - 2023
- [j5]Aokun Chen, Zehao Yu, Xi Yang, Yi Guo, Jiang Bian, Yonghui Wu:
Contextualized medication information extraction using Transformer-based deep learning architectures. J. Biomed. Informatics 142: 104370 (2023) - [j4]Cheng Peng, Xi Yang, Aokun Chen, Kaleb E. Smith, Nima M. Pournejatian, Anthony B. Costa, Cheryl Martin, Mona G. Flores, Ying Zhang, Tanja Magoc, Gloria P. Lipori, Duane A. Mitchell, Naykky Singh Ospina, Mustafa M. Ahmed, William R. Hogan, Elizabeth A. Shenkman, Yi Guo, Jiang Bian, Yonghui Wu:
A study of generative large language model for medical research and healthcare. npj Digit. Medicine 6 (2023) - 2022
- [j3]Xi Yang, Aokun Chen, Nima M. Pournejatian, Hoo Chang Shin, Kaleb E. Smith, Christopher Parisien, Colin Compas, Cheryl Martin, Anthony B. Costa, Mona G. Flores, Ying Zhang, Tanja Magoc, Christopher A. Harle, Gloria P. Lipori, Duane A. Mitchell, William R. Hogan, Elizabeth A. Shenkman, Jiang Bian, Yonghui Wu:
A large language model for electronic health records. npj Digit. Medicine 5 (2022) - [j2]Luiz Giovanini, Fabrício Ceschin, Mirela Silva, Aokun Chen, Ramchandra Kulkarni, Sanjay Banda, Madison Lysaght, Heng Qiao, Nikolaos Sapountzis, Ruimin Sun, Brandon Matthews, Dapeng Oliver Wu, André Grégio, Daniela Oliveira:
Online Binary Models are Promising for Distinguishing Temporally Consistent Computer Usage Profiles. IEEE Trans. Biom. Behav. Identity Sci. 4(3): 412-423 (2022) - [j1]Ruimin Sun, Xiaoyong Yuan, Pan He, Qile Zhu, Aokun Chen, André Grégio, Daniela Oliveira, Xiaolin Li:
Learning Fast and Slow: Propedeutica for Real-Time Malware Detection. IEEE Trans. Neural Networks Learn. Syst. 33(6): 2518-2529 (2022)
Conference and Workshop Papers
- 2024
- [c8]Mengxian Lyu, Cheng Peng, Daniel Paredes, Ziyi Chen, Aokun Chen, Jiang Bian, Yonghui Wu:
UF-HOBI at "Discharge Me!": A Hybrid Solution for Discharge Summary Generation Through Prompt-based Tuning of GatorTronGPT Models. BioNLP@ACL 2024: 685-695 - [c7]Aokun Chen, Daniel Paredes, Zehao Yu, Xiwei Lou, Roberta Brunson, Jamie N. Thomas, Kimberly A. Martinez, Robert J. Lucero, Tanja Magoc, Laurence M. Solberg, Urszula Alina Snigurska, Sarah E. Ser, Mattia Prosperi, Jiang Bian, Ragnhildur I. Bjarnadottir, Yonghui Wu:
Identifying Symptoms of Delirium from Clinical Narratives Using Natural Language Processing. ICHI 2024: 305-311 - 2023
- [c6]Amin Dada, Aokun Chen, Cheng Peng, Kaleb E. Smith, Ahmad Idrissi-Yaghir, Constantin Seibold, Jianning Li, Lars Heiliger, Christoph M. Friedrich, Daniel Truhn, Jan Egger, Jiang Bian, Jens Kleesiek, Yonghui Wu:
On the Impact of Cross-Domain Data on German Language Models. EMNLP (Findings) 2023: 13801-13813 - [c5]Aokun Chen, Qian Li, Elizabeth Shenkman, Yonghui Wu, Yi Guo, Jiang Bian:
Exploring the Effect of Eligibility Criteria on AD Severity and Severe Adverse Event in Eligible Patients. ICHI 2023: 756-759 - 2022
- [c4]Aokun Chen, Qian Li, Xing He, Michael Jaffee, William R. Hogan, Fei Wang, Yi Guo, Jiang Bian:
Impacts of Eligibility Criteria on Trial Participants' Age in Alzheimer's Disease Clinical Trials. AMIA 2022 - 2018
- [c3]Meisam Navaki Arefi, Geoffrey Alexander, Hooman Rokham, Aokun Chen, Michalis Faloutsos, Xuetao Wei, Daniela Seabra Oliveira, Jedidiah R. Crandall:
FAROS: Illuminating In-memory Injection Attacks via Provenance-Based Whole-System Dynamic Information Flow Tracking. DSN 2018: 231-242 - 2016
- [c2]Ruimin Sun, Andrew Lee, Aokun Chen, Donald E. Porter, Matt Bishop, Daniela Oliveira:
Bear: A Framework for Understanding Application Sensitivity to OS (Mis) Behavior. ISSRE 2016: 388-399 - [c1]Aokun Chen, Pratik Prabhanjan Brahma, Dapeng Oliver Wu, Natalie C. Ebner, Brandon Matthews, Jedidiah R. Crandall, Xuetao Wei, Michalis Faloutsos, Daniela Oliveira:
Cross-layer personalization as a first-class citizen for situation awareness and computer infrastructure security. NSPW 2016: 23-35
Informal and Other Publications
- 2024
- [i11]Qianqian Xie, Qingyu Chen, Aokun Chen, Cheng Peng, Yan Hu, Fongci Lin, Xueqing Peng, Jimin Huang, Jeffrey Zhang, Vipina Kuttichi Keloth, Xingyu Zhou, Huan He, Lucila Ohno-Machido, Yonghui Wu, Hua Xu, Jiang Bian:
Me LLaMA: Foundation Large Language Models for Medical Applications. CoRR abs/2402.12749 (2024) - [i10]Aokun Chen, Qian Li, Yu Huang, Yongqiu Li, Yu-Neng Chuang, Xia Hu, Serena Guo, Yonghui Wu, Yi Guo, Jiang Bian:
Feasibility of Identifying Factors Related to Alzheimer's Disease and Related Dementia in Real-World Data. CoRR abs/2402.15515 (2024) - [i9]Mengxian Lyu, Cheng Peng, Daniel Paredes, Ziyi Chen, Aokun Chen, Jiang Bian, Yonghui Wu:
UF-HOBI at "Discharge Me!": A Hybrid Solution for Discharge Summary Generation Through Prompt-based Tuning of GatorTronGPT Models. CoRR abs/2407.15359 (2024) - 2023
- [i8]Aokun Chen, Zehao Yu, Xi Yang, Yi Guo, Jiang Bian, Yonghui Wu:
Contextualized Medication Information Extraction Using Transformer-based Deep Learning Architectures. CoRR abs/2303.08259 (2023) - [i7]Aokun Chen, Daniel Paredes, Zehao Yu, Xiwei Lou, Roberta Brunson, Jamie N. Thomas, Kimberly A. Martinez, Robert J. Lucero, Tanja Magoc, Laurence M. Solberg, Urszula Alina Snigurska, Sarah E. Ser, Mattia Prosperi, Jiang Bian, Ragnhildur I. Bjarnadottir, Yonghui Wu:
Identifying Symptoms of Delirium from Clinical Narratives Using Natural Language Processing. CoRR abs/2304.00111 (2023) - [i6]Cheng Peng, Xi Yang, Aokun Chen, Kaleb E. Smith, Nima M. Pournejatian, Anthony B. Costa, Cheryl Martin, Mona G. Flores, Ying Zhang, Tanja Magoc, Gloria P. Lipori, Duane A. Mitchell, Naykky Singh Ospina, Mustafa M. Ahmed, William R. Hogan, Elizabeth Shenkman, Yi Guo, Jiang Bian, Yonghui Wu:
A Study of Generative Large Language Model for Medical Research and Healthcare. CoRR abs/2305.13523 (2023) - [i5]Cheng Peng, Xi Yang, Kaleb E. Smith, Zehao Yu, Aokun Chen, Jiang Bian, Yonghui Wu:
Model Tuning or Prompt Tuning? A Study of Large Language Models for Clinical Concept and Relation Extraction. CoRR abs/2310.06239 (2023) - [i4]Amin Dada, Aokun Chen, Cheng Peng, Kaleb E. Smith, Ahmad Idrissi-Yaghir, Constantin Marc Seibold, Jianning Li, Lars Heiliger, Xi Yang, Christoph M. Friedrich, Daniel Truhn, Jan Egger, Jiang Bian, Jens Kleesiek, Yonghui Wu:
On the Impact of Cross-Domain Data on German Language Models. CoRR abs/2310.07321 (2023) - [i3]Cheng Peng, Xi Yang, Aokun Chen, Zehao Yu, Kaleb E. Smith, Anthony B. Costa, Mona G. Flores, Jiang Bian, Yonghui Wu:
Generative Large Language Models Are All-purpose Text Analytics Engines: Text-to-text Learning Is All Your Need. CoRR abs/2312.06099 (2023) - 2021
- [i2]Luiz Giovanini, Fabrício Ceschin, Mirela Silva, Aokun Chen, Ramchandra Kulkarni, Sanjay Banda, Madison Lysaght, Heng Qiao, Nikolaos Sapountzis, Ruimin Sun, Brandon Matthews, Dapeng Oliver Wu, André Grégio, Daniela Oliveira:
Computer Users Have Unique Yet Temporally Inconsistent Computer Usage Profiles. CoRR abs/2105.09900 (2021) - 2017
- [i1]Ruimin Sun, Xiaoyong Yuan, Pan He, Qile Zhu, Aokun Chen, André Grégio, Daniela Oliveira, Xiaolin Li:
Learning Fast and Slow: PROPEDEUTICA for Real-time Malware Detection. CoRR abs/1712.01145 (2017)
Coauthor Index
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