BibTeX records: David Vallenet

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@article{DBLP:journals/nar/VallenetCDABBBB20,
  author    = {David Vallenet and
               Alexandra Calteau and
               Mathieu Dubois and
               Paul Amours and
               Adelme Bazin and
               Myl{\`{e}}ne Beuvin and
               Laura Burlot and
               Xavier Bussell and
               St{\'{e}}phanie Fouteau and
               Guillaume Gautreau and
               Aur{\'{e}}lie Lajus and
               Jordan Langlois and
               R{\'{e}}mi Planel and
               David Roche and
               Johan Rollin and
               Zo{\'{e}} Rouy and
               Valentin Sabatet and
               Claudine M{\'{e}}digue},
  title     = {MicroScope: an integrated platform for the annotation and exploration
               of microbial gene functions through genomic, pangenomic and metabolic
               comparative analysis},
  journal   = {Nucleic Acids Res.},
  volume    = {48},
  number    = {Database-Issue},
  pages     = {D579--D589},
  year      = {2020}
}
@article{DBLP:journals/ploscb/GautreauBGPBDPM20,
  author    = {Guillaume Gautreau and
               Adelme Bazin and
               Mathieu Gachet and
               R{\'{e}}mi Planel and
               Laura Burlot and
               Mathieu Dubois and
               Amandine Perrin and
               Claudine M{\'{e}}digue and
               Alexandra Calteau and
               St{\'{e}}phane Cruveiller and
               Catherine Matias and
               Christophe Ambroise and
               Eduardo P. C. Rocha and
               David Vallenet},
  title     = {PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome
               graph},
  journal   = {PLoS Comput. Biol.},
  volume    = {16},
  number    = {3},
  year      = {2020}
}
@article{DBLP:journals/bib/MedigueCCGGJLLP19,
  author    = {Claudine M{\'{e}}digue and
               Alexandra Calteau and
               St{\'{e}}phane Cruveiller and
               Mathieu Gachet and
               Guillaume Gautreau and
               Adrien Josso and
               Aur{\'{e}}lie Lajus and
               Jordan Langlois and
               Hugo Pereira and
               R{\'{e}}mi Planel and
               David Roche and
               Johan Rollin and
               Zo{\'{e}} Rouy and
               David Vallenet},
  title     = {MicroScope - an integrated resource for community expertise of gene
               functions and comparative analysis of microbial genomic and metabolic
               data},
  journal   = {Briefings Bioinform.},
  volume    = {20},
  number    = {4},
  pages     = {1071--1084},
  year      = {2019}
}
@article{DBLP:journals/bmcbi/MercierJMV18,
  author    = {Jonathan Mercier and
               Adrien Josso and
               Claudine M{\'{e}}digue and
               David Vallenet},
  title     = {{GROOLS:} reactive graph reasoning for genome annotation through biological
               processes},
  journal   = {{BMC} Bioinform.},
  volume    = {19},
  number    = {1},
  pages     = {132:1--132:12},
  year      = {2018}
}
@article{DBLP:journals/nar/VallenetCCGLJMR17,
  author    = {David Vallenet and
               Alexandra Calteau and
               St{\'{e}}phane Cruveiller and
               Mathieu Gachet and
               Aur{\'{e}}lie Lajus and
               Adrien Josso and
               Jonathan Mercier and
               Alexandre Renaux and
               Johan Rollin and
               Zo{\'{e}} Rouy and
               David Roche and
               Claude Scarpelli and
               Claudine M{\'{e}}digue},
  title     = {MicroScope in 2017: an expanding and evolving integrated resource
               for community expertise of microbial genomes},
  journal   = {Nucleic Acids Res.},
  volume    = {45},
  number    = {Database-Issue},
  pages     = {D517--D528},
  year      = {2017}
}
@article{DBLP:journals/bmcbi/SorokinaMV15,
  author    = {Maria Sorokina and
               Claudine M{\'{e}}digue and
               David Vallenet},
  title     = {A new network representation of the metabolism to detect chemical
               transformation modules},
  journal   = {{BMC} Bioinform.},
  volume    = {16},
  pages     = {385:1--385:9},
  year      = {2015}
}
@inproceedings{DBLP:conf/ruleml/MercierV15,
  author    = {Jonathan Mercier and
               David Vallenet},
  title     = {{GROOLS:} Reactive Graph Reasoning for Genome Annotation},
  booktitle = {Challenge+DC@RuleML},
  series    = {{CEUR} Workshop Proceedings},
  volume    = {1417},
  publisher = {CEUR-WS.org},
  year      = {2015}
}
@article{DBLP:journals/nar/VallenetBCCELFLMRRSSSWM13,
  author    = {David Vallenet and
               Eugeni Belda and
               Alexandra Calteau and
               St{\'{e}}phane Cruveiller and
               Stefan Engelen and
               Aur{\'{e}}lie Lajus and
               Fran{\c{c}}ois Le F{\`{e}}vre and
               Cyrille Longin and
               Damien Mornico and
               David Roche and
               Zo{\'{e}} Rouy and
               Gregory Salvignol and
               Claude Scarpelli and
               Adam Alexander Thil Smith and
               Marion Weiman and
               Claudine M{\'{e}}digue},
  title     = {MicroScope - an integrated microbial resource for the curation and
               comparative analysis of genomic and metabolic data},
  journal   = {Nucleic Acids Res.},
  volume    = {41},
  number    = {Database-Issue},
  pages     = {636--647},
  year      = {2013}
}
@article{DBLP:journals/ploscb/SmithBVMV12,
  author    = {Adam Alexander Thil Smith and
               Eugeni Belda and
               Alain Viari and
               Claudine M{\'{e}}digue and
               David Vallenet},
  title     = {The CanOE Strategy: Integrating Genomic and Metabolic Contexts across
               Multiple Prokaryote Genomes to Find Candidate Genes for Orphan Enzymes},
  journal   = {PLoS Comput. Biol.},
  volume    = {8},
  number    = {5},
  year      = {2012}
}
@article{DBLP:journals/biodb/VallenetEMCFLRRSSM09,
  author    = {David Vallenet and
               Stefan Engelen and
               Damien Mornico and
               St{\'{e}}phane Cruveiller and
               Ludovic Fleury and
               Aur{\'{e}}lie Lajus and
               Zo{\'{e}} Rouy and
               David Roche and
               Gregory Salvignol and
               Claude Scarpelli and
               Claudine M{\'{e}}digue},
  title     = {MicroScope: a platform for microbial genome annotation and comparative
               genomics},
  journal   = {Database J. Biol. Databases Curation},
  volume    = {2009},
  year      = {2009}
}
@article{DBLP:journals/bmcsb/DurotFBKVCSSWS08,
  author    = {Maxime Durot and
               Fran{\c{c}}ois Le F{\`{e}}vre and
               V{\'{e}}ronique de Berardinis and
               Annett Kreimeyer and
               David Vallenet and
               Cyril Combe and
               Serge Smidtas and
               Marcel Salanoubat and
               Jean Weissenbach and
               Vincent Sch{\"{a}}chter},
  title     = {Iterative reconstruction of a global metabolic model of Acinetobacter
               baylyi {ADP1} using high-throughput growth phenotype and gene essentiality
               data},
  journal   = {{BMC} Syst. Biol.},
  volume    = {2},
  pages     = {85},
  year      = {2008}
}
@article{DBLP:journals/nar/CruveillerSVLBM05,
  author    = {St{\'{e}}phane Cruveiller and
               J{\'{e}}r{\^{o}}me Le Saux and
               David Vallenet and
               Aur{\'{e}}lie Lajus and
               St{\'{e}}phanie Bocs and
               Claudine M{\'{e}}digue},
  title     = {MICheck: a web tool for fast checking of syntactic annotations of
               bacterial genomes},
  journal   = {Nucleic Acids Res.},
  volume    = {33},
  number    = {Web-Server-Issue},
  pages     = {471--479},
  year      = {2005}
}
@article{DBLP:journals/nar/BocsCVNM03,
  author    = {St{\'{e}}phanie Bocs and
               St{\'{e}}phane Cruveiller and
               David Vallenet and
               Gr{\'{e}}gory Nuel and
               Claudine M{\'{e}}digue},
  title     = {AMIGene: Annotation of MIcrobial Genes},
  journal   = {Nucleic Acids Res.},
  volume    = {31},
  number    = {13},
  pages     = {3723--3726},
  year      = {2003}
}
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