BibTeX records: David Vallenet

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@article{DBLP:journals/nar/VallenetCDABBBB20,
  author    = {David Vallenet and
               Alexandra Calteau and
               Mathieu Dubois and
               Paul Amours and
               Adelme Bazin and
               Myl{\`{e}}ne Beuvin and
               Laura Burlot and
               Xavier Bussell and
               St{\'{e}}phanie Fouteau and
               Guillaume Gautreau and
               Aur{\'{e}}lie Lajus and
               Jordan Langlois and
               R{\'{e}}mi Planel and
               David Roche and
               Johan Rollin and
               Zo{\'{e}} Rouy and
               Valentin Sabatet and
               Claudine M{\'{e}}digue},
  title     = {MicroScope: an integrated platform for the annotation and exploration
               of microbial gene functions through genomic, pangenomic and metabolic
               comparative analysis},
  journal   = {Nucleic Acids Res.},
  volume    = {48},
  number    = {Database-Issue},
  pages     = {D579--D589},
  year      = {2020},
  url       = {https://doi.org/10.1093/nar/gkz926},
  doi       = {10.1093/nar/gkz926},
  timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/nar/VallenetCDABBBB20.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/GautreauBGPBDPM20,
  author    = {Guillaume Gautreau and
               Adelme Bazin and
               Mathieu Gachet and
               R{\'{e}}mi Planel and
               Laura Burlot and
               Mathieu Dubois and
               Amandine Perrin and
               Claudine M{\'{e}}digue and
               Alexandra Calteau and
               St{\'{e}}phane Cruveiller and
               Catherine Matias and
               Christophe Ambroise and
               Eduardo P. C. Rocha and
               David Vallenet},
  title     = {PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome
               graph},
  journal   = {PLoS Comput. Biol.},
  volume    = {16},
  number    = {3},
  year      = {2020},
  url       = {https://doi.org/10.1371/journal.pcbi.1007732},
  doi       = {10.1371/journal.pcbi.1007732},
  timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/ploscb/GautreauBGPBDPM20.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/MedigueCCGGJLLP19,
  author    = {Claudine M{\'{e}}digue and
               Alexandra Calteau and
               St{\'{e}}phane Cruveiller and
               Mathieu Gachet and
               Guillaume Gautreau and
               Adrien Josso and
               Aur{\'{e}}lie Lajus and
               Jordan Langlois and
               Hugo Pereira and
               R{\'{e}}mi Planel and
               David Roche and
               Johan Rollin and
               Zo{\'{e}} Rouy and
               David Vallenet},
  title     = {MicroScope - an integrated resource for community expertise of gene
               functions and comparative analysis of microbial genomic and metabolic
               data},
  journal   = {Briefings Bioinform.},
  volume    = {20},
  number    = {4},
  pages     = {1071--1084},
  year      = {2019},
  url       = {https://doi.org/10.1093/bib/bbx113},
  doi       = {10.1093/bib/bbx113},
  timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/bib/MedigueCCGGJLLP19.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MercierJMV18,
  author    = {Jonathan Mercier and
               Adrien Josso and
               Claudine M{\'{e}}digue and
               David Vallenet},
  title     = {{GROOLS:} reactive graph reasoning for genome annotation through biological
               processes},
  journal   = {{BMC} Bioinform.},
  volume    = {19},
  number    = {1},
  pages     = {132:1--132:12},
  year      = {2018},
  url       = {https://doi.org/10.1186/s12859-018-2126-1},
  doi       = {10.1186/s12859-018-2126-1},
  timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/journals/bmcbi/MercierJMV18.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/VallenetCCGLJMR17,
  author    = {David Vallenet and
               Alexandra Calteau and
               St{\'{e}}phane Cruveiller and
               Mathieu Gachet and
               Aur{\'{e}}lie Lajus and
               Adrien Josso and
               Jonathan Mercier and
               Alexandre Renaux and
               Johan Rollin and
               Zo{\'{e}} Rouy and
               David Roche and
               Claude Scarpelli and
               Claudine M{\'{e}}digue},
  title     = {MicroScope in 2017: an expanding and evolving integrated resource
               for community expertise of microbial genomes},
  journal   = {Nucleic Acids Res.},
  volume    = {45},
  number    = {Database-Issue},
  pages     = {D517--D528},
  year      = {2017},
  url       = {https://doi.org/10.1093/nar/gkw1101},
  doi       = {10.1093/nar/gkw1101},
  timestamp = {Sun, 17 May 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/nar/VallenetCCGLJMR17.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SorokinaMV15,
  author    = {Maria Sorokina and
               Claudine M{\'{e}}digue and
               David Vallenet},
  title     = {A new network representation of the metabolism to detect chemical
               transformation modules},
  journal   = {{BMC} Bioinform.},
  volume    = {16},
  pages     = {385:1--385:9},
  year      = {2015},
  url       = {https://doi.org/10.1186/s12859-015-0809-4},
  doi       = {10.1186/s12859-015-0809-4},
  timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/journals/bmcbi/SorokinaMV15.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ruleml/MercierV15,
  author    = {Jonathan Mercier and
               David Vallenet},
  editor    = {Nick Bassiliades and
               Paul Fodor and
               Adrian Giurca and
               Georg Gottlob and
               Tom{\'{a}}s Kliegr and
               Grzegorz J. Nalepa and
               Monica Palmirani and
               Adrian Paschke and
               Mark Proctor and
               Dumitru Roman and
               Fariba Sadri and
               Nenad Stojanovic},
  title     = {{GROOLS:} Reactive Graph Reasoning for Genome Annotation},
  booktitle = {Proceedings of the RuleML 2015 Challenge, the Special Track on Rule-based
               Recommender Systems for the Web of Data, the Special Industry Track
               and the RuleML 2015 Doctoral Consortium hosted by the 9th International
               Web Rule Symposium (RuleML 2015), Berlin, Germany, August 2-5, 2015},
  series    = {{CEUR} Workshop Proceedings},
  volume    = {1417},
  publisher = {CEUR-WS.org},
  year      = {2015},
  url       = {http://ceur-ws.org/Vol-1417/paper4.pdf},
  timestamp = {Wed, 12 Feb 2020 16:44:23 +0100},
  biburl    = {https://dblp.org/rec/conf/ruleml/MercierV15.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/VallenetBCCELFLMRRSSSWM13,
  author    = {David Vallenet and
               Eugeni Belda and
               Alexandra Calteau and
               St{\'{e}}phane Cruveiller and
               Stefan Engelen and
               Aur{\'{e}}lie Lajus and
               Fran{\c{c}}ois Le F{\`{e}}vre and
               Cyrille Longin and
               Damien Mornico and
               David Roche and
               Zo{\'{e}} Rouy and
               Gregory Salvignol and
               Claude Scarpelli and
               Adam Alexander Thil Smith and
               Marion Weiman and
               Claudine M{\'{e}}digue},
  title     = {MicroScope - an integrated microbial resource for the curation and
               comparative analysis of genomic and metabolic data},
  journal   = {Nucleic Acids Res.},
  volume    = {41},
  number    = {Database-Issue},
  pages     = {636--647},
  year      = {2013},
  url       = {https://doi.org/10.1093/nar/gks1194},
  doi       = {10.1093/nar/gks1194},
  timestamp = {Sun, 17 May 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/nar/VallenetBCCELFLMRRSSSWM13.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/SmithBVMV12,
  author    = {Adam Alexander Thil Smith and
               Eugeni Belda and
               Alain Viari and
               Claudine M{\'{e}}digue and
               David Vallenet},
  title     = {The CanOE Strategy: Integrating Genomic and Metabolic Contexts across
               Multiple Prokaryote Genomes to Find Candidate Genes for Orphan Enzymes},
  journal   = {PLoS Comput. Biol.},
  volume    = {8},
  number    = {5},
  year      = {2012},
  url       = {https://doi.org/10.1371/journal.pcbi.1002540},
  doi       = {10.1371/journal.pcbi.1002540},
  timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/ploscb/SmithBVMV12.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/VallenetEMCFLRRSSM09,
  author    = {David Vallenet and
               Stefan Engelen and
               Damien Mornico and
               St{\'{e}}phane Cruveiller and
               Ludovic Fleury and
               Aur{\'{e}}lie Lajus and
               Zo{\'{e}} Rouy and
               David Roche and
               Gregory Salvignol and
               Claude Scarpelli and
               Claudine M{\'{e}}digue},
  title     = {MicroScope: a platform for microbial genome annotation and comparative
               genomics},
  journal   = {Database J. Biol. Databases Curation},
  volume    = {2009},
  year      = {2009},
  url       = {https://doi.org/10.1093/database/bap021},
  doi       = {10.1093/database/bap021},
  timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/biodb/VallenetEMCFLRRSSM09.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/DurotFBKVCSSWS08,
  author    = {Maxime Durot and
               Fran{\c{c}}ois Le F{\`{e}}vre and
               V{\'{e}}ronique de Berardinis and
               Annett Kreimeyer and
               David Vallenet and
               Cyril Combe and
               Serge Smidtas and
               Marcel Salanoubat and
               Jean Weissenbach and
               Vincent Sch{\"{a}}chter},
  title     = {Iterative reconstruction of a global metabolic model of Acinetobacter
               baylyi {ADP1} using high-throughput growth phenotype and gene essentiality
               data},
  journal   = {{BMC} Syst. Biol.},
  volume    = {2},
  pages     = {85},
  year      = {2008},
  url       = {https://doi.org/10.1186/1752-0509-2-85},
  doi       = {10.1186/1752-0509-2-85},
  timestamp = {Tue, 05 May 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/bmcsb/DurotFBKVCSSWS08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CruveillerSVLBM05,
  author    = {St{\'{e}}phane Cruveiller and
               J{\'{e}}r{\^{o}}me Le Saux and
               David Vallenet and
               Aur{\'{e}}lie Lajus and
               St{\'{e}}phanie Bocs and
               Claudine M{\'{e}}digue},
  title     = {MICheck: a web tool for fast checking of syntactic annotations of
               bacterial genomes},
  journal   = {Nucleic Acids Res.},
  volume    = {33},
  number    = {Web-Server-Issue},
  pages     = {471--479},
  year      = {2005},
  url       = {https://doi.org/10.1093/nar/gki498},
  doi       = {10.1093/nar/gki498},
  timestamp = {Sun, 17 May 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/nar/CruveillerSVLBM05.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BocsCVNM03,
  author    = {St{\'{e}}phanie Bocs and
               St{\'{e}}phane Cruveiller and
               David Vallenet and
               Gr{\'{e}}gory Nuel and
               Claudine M{\'{e}}digue},
  title     = {AMIGene: Annotation of MIcrobial Genes},
  journal   = {Nucleic Acids Res.},
  volume    = {31},
  number    = {13},
  pages     = {3723--3726},
  year      = {2003},
  url       = {https://doi.org/10.1093/nar/gkg590},
  doi       = {10.1093/nar/gkg590},
  timestamp = {Sun, 17 May 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/nar/BocsCVNM03.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
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