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Thomas G. Doak

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affiliation: Indiana University, Department of Biology

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Journal Articles

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2020
[j3]
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  dblp key:
  - journals/bioinformatics/ZhengCDSY20
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  - https://dblp.org/rec/journals/bioinformatics/ZhengCDSY20
Weibo Zheng, Jing Chen, Thomas G. Doak, Weibo Song, Ying Yan:
ADFinder: accurate detection of programmed DNA elimination using NGS high-throughput sequencing data. Bioinform. 36(12): 3632-3636 (2020)
2012
[j2]
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  - journals/bioinformatics/WuRDY12
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  - https://dblp.org/rec/journals/bioinformatics/WuRDY12
Yu-Wei Wu, Mina Rho, Thomas G. Doak, Yuzhen Ye:
Stitching gene fragments with a network matching algorithm improves gene assembly for metagenomics. Bioinform. 28(18): 363-369 (2012)
2009
[j1]
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  dblp key:
  - journals/ploscb/YeD09
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  - https://dblp.org/rec/journals/ploscb/YeD09
Yuzhen Ye, Thomas G. Doak:
A Parsimony Approach to Biological Pathway Reconstruction/Inference for Genomes and Metagenomes. PLoS Comput. Biol. 5(8) (2009)

Conference and Workshop Papers

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2017
[c6]
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  dblp key:
  - conf/xsede/GanoteSPBD17
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  - https://dblp.org/rec/conf/xsede/GanoteSPBD17
Carrie L. Ganote, Sheri A. Sanders, Bhavya Nalagampalli Papudeshi, Philip D. Blood, Thomas G. Doak:
A Voice for Bioinformatics. PEARC 2017: 36:1-36:5
2015
[c5]
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  - conf/xsede/WuGDBMS15
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Le-Shin Wu, Carrie L. Ganote, Thomas G. Doak, William K. Barnett, Keithanne Mockaitis, Craig A. Stewart:
Cyberinfrastructure resources enabling creation of the loblolly pine reference transcriptome. XSEDE 2015: 3:1-3:6
2013
[c4]
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  - conf/xsede/LeDucDWBGV13
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  - https://dblp.org/rec/conf/xsede/LeDucDWBGV13
Richard D. LeDuc, Thomas G. Doak, Le-Shin Wu, Philip D. Blood, Carrie L. Ganote, Matthew Vaughn:
National Center for Genome Analysis support leverages XSEDE to support life science research. XSEDE 2013: 13:1-13:7
[c3]
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  - conf/xsede/ThotaHMDXH13
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Abhinav Thota, Bernhard Haubold, Scott Michael, Thomas G. Doak, Sen Xu, Robert Henschel:
Making campus bridging work for researchers: a case study with mlRho. XSEDE 2013: 17:1-17:8
2012
[c2]
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  dblp key:
  - conf/psb/ZhangDY12
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Quan Zhang, Thomas G. Doak, Yuzhen Ye:
Artificial Functional Difference Between Microbial Communities Caused by Length Difference of Sequencing Reads. Pacific Symposium on Biocomputing 2012: 259-270
2011
[c1]
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  - conf/psb/ShahTDY11
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Neethu Shah, Haixu Tang, Thomas G. Doak, Yuzhen Ye:
Comparing Bacterial Communities Inferred from 16s Rrna Gene Sequencing and Shotgun Metagenomics. Pacific Symposium on Biocomputing 2011: 165-176

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