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Yoann Dufresne
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Books and Theses
- 2016
- [b1]Yoann Dufresne:
Algorithmique pour l'annotation automatique de peptides non ribosomiques. (Algorithms for automatic annotation of Non Ribosomal Peptides). Lille University of Science and Technology, France, 2016
Journal Articles
- 2024
- [j7]Amatur Rahman, Yoann Dufresne, Paul Medvedev:
Compression algorithm for colored de Bruijn graphs. Algorithms Mol. Biol. 19(1): 20 (2024) - 2022
- [j6]Yoann Dufresne
, Téo Lemane
, Pierre Marijon, Pierre Peterlongo
, Amatur Rahman
, Marek Kokot, Paul Medvedev
, Sebastian Deorowicz, Rayan Chikhi:
The K-mer File Format: a standardized and compact disk representation of sets of k-mers. Bioinform. 38(18): 4423-4425 (2022) - 2020
- [j5]Areski Flissi, Emma Ricart, Clémentine Campart, Mickael Chevalier, Yoann Dufresne, Juraj Michalik
, Philippe Jacques, Christophe Flahaut
, Frédérique Lisacek, Valérie Leclère, Maude Pupin
:
Norine: update of the nonribosomal peptide resource. Nucleic Acids Res. 48(Database-Issue): D465-D469 (2020) - 2019
- [j4]Yoann Dufresne
, Franck Lejzerowicz
, Laure Apotheloz Perret-Gentil, Jan Pawlowski
, Tristan Cordier
:
SLIM: a flexible web application for the reproducible processing of environmental DNA metabarcoding data. BMC Bioinform. 20(1): 88:1-88:6 (2019) - 2018
- [j3]Pierre Pericard
, Yoann Dufresne
, Loïc Couderc, Samuel Blanquart, Hélène Touzet
:
MATAM: reconstruction of phylogenetic marker genes from short sequencing reads in metagenomes. Bioinform. 34(4): 585-591 (2018) - 2016
- [j2]Areski Flissi, Yoann Dufresne, Juraj Michalik, Laurie Tonon, Stéphane Janot, Laurent Noé, Philippe Jacques, Valérie Leclère, Maude Pupin:
Norine, the knowledgebase dedicated to non-ribosomal peptides, is now open to crowdsourcing. Nucleic Acids Res. 44(Database-Issue): 1113-1118 (2016) - 2015
- [j1]Yoann Dufresne
, Laurent Noé
, Valérie Leclère
, Maude Pupin
:
Smiles2Monomers: a link between chemical and biological structures for polymers. J. Cheminformatics 7: 62:1-62:11 (2015)
Conference and Workshop Papers
- 2023
- [c2]Amatur Rahman, Yoann Dufresne, Paul Medvedev:
Compression Algorithm for Colored de Bruijn Graphs. WABI 2023: 17:1-17:14 - 2020
- [c1]Yoann Dufresne
, Chen Sun
, Pierre Marijon
, Dominique Lavenier
, Cédric Chauve, Rayan Chikhi
:
A Graph-Theoretic Barcode Ordering Model for Linked-Reads. WABI 2020: 11:1-11:17
Coauthor Index
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